Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA10	10349	genome.wustl.edu	37	17	67188786	67188786	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67188786	67188786	C	A	SNP	ABCA10	NM_080282	human	genbank	57_37b	-1	reviewed	missense	c.1789	p.V597L	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCA4	24	genome.wustl.edu	37	1	94528272	94528272	+	Missense_Mutation	SNP	C	C	G	rs61752397	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94528272	94528272	C	G	SNP	ABCA4	NM_000350	human	genbank	57_37b	-1	reviewed	missense	c.1798	p.D600H	1.000	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-		
AJAP1	55966	genome.wustl.edu	37	1	4832546	4832546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	4832546	4832546	C	T	SNP	AJAP1	NM_001042478	human	genbank	57_37b	+1	validated	missense	c.1124	p.S375L	0.903	NULL	PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	
ANO4	121601	genome.wustl.edu	37	12	101504243	101504243	+	Silent	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	101504243	101504243	C	G	SNP	ANO4	NM_178826	human	genbank	57_37b	+1	validated	silent	c.2106	p.A702	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors	
BZRAP1	9256	genome.wustl.edu	37	17	56386358	56386358	+	Silent	SNP	T	T	A	rs2526360	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56386358	56386358	T	A	SNP	BZRAP1	NM_004758	human	genbank	57_37b	-1	validated	silent	c.4275	p.R1425	0.656	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-		
C21orf33	8209	genome.wustl.edu	37	21	45553624	45553624	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45553624	45553624	A	G	SNP	C21orf33	NM_004649	human	genbank	57_37b	+1	validated	silent	c.45	p.A15	0.000	NULL	superfamily_Class I glutamine amidotransferase-like,HMMPfam_DJ-1_PfpI	-	no_errors	
C2orf16	84226	genome.wustl.edu	37	2	27800838	27800838	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27800838	27800838	C	T	SNP	C2orf16	NM_032266	human	genbank	57_37b	+1	validated	missense	c.1399	p.P467S	0.036	NULL	NULL	-	no_errors	
C2orf28	51374	genome.wustl.edu	37	2	27439748	27439765	+	In_Frame_Del	DEL	GGAGCCACCACTCTATCC	GGAGCCACCACTCTATCC	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	GGAGCCACCACTCTATCC	GGAGCCACCACTCTATCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27439748	27439765	GGAGCCACCACTCTATCC	-	DEL	C2orf28	NM_080592	human	genbank	57_37b	+1	reviewed	in_frame_del	c.787_804	p.GATTLS263in_frame_del	1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.983:0.004:0.005:0.073:0.069:0.410:0.567:0.710	NULL	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	(deletion:cds_exon[27439712,27439816])	no_errors	
C4A	720	genome.wustl.edu	37	6	31965519	31965519	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31965519	31965519	G	T	SNP	C4A	NM_007293	human	genbank	57_37b	+1	reviewed	missense	c.4115	p.G1372V	0.999	NULL	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors	
C4B	721	genome.wustl.edu	37	6	31998256	31998256	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31998256	31998256	G	T	SNP	C4B	NM_001002029	human	genbank	57_37b	+1	reviewed	missense	c.4115	p.G1372V	0.998	NULL	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors	
C8orf44	56260	genome.wustl.edu	37	8	67592086	67592086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67592086	67592086	C	T	SNP	C8orf44	NM_019607	human	genbank	57_37b	+1	provisional	missense	c.377	p.P126L	0.000	NULL	NULL	-	no_errors	
CCDC39	339829	genome.wustl.edu	37	3	180366114	180366114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	180366114	180366114	C	T	SNP	CCDC39	NM_181426	human	genbank	57_37b	-1	validated	missense	c.1201	p.V401M	0.618	NULL	superfamily_Prefoldin	-	no_errors	
CCDC78	124093	genome.wustl.edu	37	16	774397	774397	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	774397	774397	G	C	SNP	CCDC78	NM_001031737	human	genbank	57_37b	-1	validated	missense	c.878	p.A293G	1.000	NULL	NULL	-	no_errors	
CDH17	1015	genome.wustl.edu	37	8	95182679	95182679	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95182679	95182679	G	T	SNP	CDH17	NM_001144663	human	genbank	57_37b	-1	reviewed	missense	c.1012	p.P338T	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
CLCNKA	1187	genome.wustl.edu	37	1	16351326	16351326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16351326	16351326	C	T	SNP	CLCNKA	NM_004070	human	genbank	57_37b	+1	reviewed	missense	c.298	p.P100S	1.000	superfamily_Cl-channel_core	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS	-	no_errors	
COPA	1314	genome.wustl.edu	37	1	160280016	160280016	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160280016	160280016	T	A	SNP	COPA	NM_001098398	human	genbank	57_37b	-1	reviewed	missense	c.1109	p.Y370F	1.000	HMMPfam_Coatomer_WDAD	HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Coatomer_WDAD,HMMPfam_COPI_C,superfamily_Calret_calnex_P	-	no_errors	
CRB1	23418	genome.wustl.edu	37	1	197396665	197396665	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197396665	197396665	T	A	SNP	CRB1	NM_201253	human	genbank	57_37b	+1	reviewed	missense	c.2210	p.I737N	0.014	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
CYP4F11	57834	genome.wustl.edu	37	19	16024565	16024576	+	In_Frame_Del	DEL	GCTCCACCCGCA	GCTCCACCCGCA	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	GCTCCACCCGCA	GCTCCACCCGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16024565	16024576	GCTCCACCCGCA	-	DEL	CYP4F11	NM_001128932	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1552_1541	p.LRVE514in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[16024542,16024719])	no_errors	
DDX24	57062	genome.wustl.edu	37	14	94524203	94524203	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94524203	94524203	C	G	SNP	DDX24	NM_020414	human	genbank	57_37b	-1	reviewed	missense	c.1954	p.D652H	1.000	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
DDX26B	203522	genome.wustl.edu	37	X	134706902	134706902	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134706902	134706902	C	G	SNP	DDX26B	NM_182540	human	genbank	57_37b	+1	validated	missense	c.1450	p.L484V	0.966	NULL	superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE	-	no_errors	
DMGDH	29958	genome.wustl.edu	37	5	78351620	78351660	+	Splice_Site	DEL	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	78351620	78351660	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA	-	DEL	DMGDH	NM_013391	human	genbank	57_37b	-1	reviewed	splice_site_del	c.375+29_375+1	e4-1	0.000:0.001:0.003:0.004:0.000:0.000:0.002:0.000:0.001:0.902:0.995:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:0.257:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.927:0.924:0.997:1.000:1.000:1.000:1.000	-	-	(deletion:intron[78350172,78351632], cds_exon[78351633,78351731])	no_errors	
EGFL6	25975	genome.wustl.edu	37	X	13645206	13645206	+	Silent	SNP	T	T	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13645206	13645206	T	A	SNP	EGFL6	NM_015507	human	genbank	57_37b	+1	reviewed	silent	c.1362	p.P454	0.001	HMMSmart_SM00137,HMMPfam_MAM	superfamily_Growth factor receptor domain,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_EGF/Laminin,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors	
ESRP1	54845	genome.wustl.edu	37	8	95658491	95658491	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95658491	95658491	C	T	SNP	ESRP1	NM_017697	human	genbank	57_37b	+1	validated	silent	c.471	p.D157	0.998	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors	
EXD3	54932	genome.wustl.edu	37	9	140201604	140201604	+	Missense_Mutation	SNP	C	C	T	rs28685844	byCluster;byFrequency;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140201604	140201604	C	T	SNP	EXD3	NM_017820	human	genbank	57_37b	-1	validated	missense	c.2429	p.R810Q	0.006	HMMPfam_DUF82	HMMSmart_35EXOc,superfamily_RNaseH_fold,HMMPfam_3_5_exonuc,HMMPfam_DUF82	-		
EYS	346007	genome.wustl.edu	37	6	64498094	64498094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	64498094	64498094	C	A	SNP	EYS	NM_001142800	human	genbank	57_37b	-1	reviewed	missense	c.7627	p.G2543C	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
FAM47A	158724	genome.wustl.edu	37	X	34148875	34148875	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34148875	34148875	C	A	SNP	FAM47A	NM_203408	human	genbank	57_37b	-1	predicted	missense	c.1521	p.E507D	0.000	NULL	NULL	-	no_errors	
FASN	2194	genome.wustl.edu	37	17	80040513	80040513	+	Missense_Mutation	SNP	C	C	T	rs17848945	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80040513	80040513	C	T	SNP	FASN	NM_004104	human	genbank	57_37b	-1	reviewed	missense	c.5809	p.V1937I	0.961	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-		
FBXL17	64839	genome.wustl.edu	37	5	107559823	107559823	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	107559823	107559823	T	A	SNP	FBXL17	ENST00000496714	human	ensembl	57_37b	-1	known	missense	c.419	p.K140M	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors	
FCRL1	115350	genome.wustl.edu	37	1	157771712	157771712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157771712	157771712	G	T	SNP	FCRL1	NM_052938	human	genbank	57_37b	-1	reviewed	missense	c.879	p.N293K	0.032	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
FLG	2312	genome.wustl.edu	37	1	152285926	152285934	+	In_Frame_Del	DEL	TCAGGCTGT	TCAGGCTGT	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	TCAGGCTGT	TCAGGCTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152285926	152285934	TCAGGCTGT	-	DEL	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1436_1428	p.EQP476in_frame_del	0.002:0.002:0.000:0.000:0.000:0.000:0.004:0.000:0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	(deletion:cds_exon[152275176,152287223])	no_errors	
FLNB	2317	genome.wustl.edu	37	3	58156382	58156382	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58156382	58156382	C	-	DEL	FLNB	NM_001457	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.7702	p.Q2568fs	0.997	superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	(deletion:cds_exon[58156302,58156489])	no_errors	
GCK	2645	genome.wustl.edu	37	7	44192974	44192974	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44192974	44192974	A	T	SNP	GCK	NM_033507	human	genbank	57_37b	-1	reviewed	missense	c.137	p.L46Q	1.000	HMMPfam_Hexokinase_1,superfamily_SSF53067	HMMPfam_Hexokinase_1,superfamily_SSF53067,PatternScan_HEXOKINASES,HMMPfam_Hexokinase_2	-	no_errors	
GIPR	2696	genome.wustl.edu	37	19	46181247	46181247	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46181247	46181247	G	T	SNP	GIPR	NM_000164	human	genbank	57_37b	+1	validated	silent	c.1008	p.R336	0.967	HMMPfam_7tm_2	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
HAL	3034	genome.wustl.edu	37	12	96388760	96388760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	96388760	96388760	C	T	SNP	HAL	NM_002108	human	genbank	57_37b	-1	reviewed	missense	c.259	p.D87N	1.000	NULL	superfamily_L-Aspartase-like,HMMPfam_PAL,PatternScan_PAL_HISTIDASE	-	no_errors	
HAUS5	23354	genome.wustl.edu	37	19	36110636	36110636	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36110636	36110636	C	G	SNP	HAUS5	NM_015302	human	genbank	57_37b	+1	validated	missense	c.1382	p.T461R	0.655	NULL	NULL	-	no_errors	
HIST1H3D	8351	genome.wustl.edu	37	6	26197245	26197245	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26197245	26197245	G	T	SNP	HIST1H3D	NM_003530	human	genbank	57_37b	-1	reviewed	missense	c.234	p.D78E	1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1080311	1080311	+	Silent	SNP	G	G	C	rs2074454	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1080311	1080311	G	C	SNP	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	silent	c.1761	p.P587	0.000	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-		
HNRNPH2	3188	genome.wustl.edu	37	X	100667034	100667034	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100667034	100667034	T	A	SNP	HNRNPH2	NM_001032393	human	genbank	57_37b	+1	reviewed	missense	c.58	p.W20R	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors	
IL17RA	23765	genome.wustl.edu	37	22	17589794	17589794	+	Missense_Mutation	SNP	C	A	A	rs12484684	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17589794	17589794	C	A	SNP	IL17RA	NM_014339	human	genbank	57_37b	+1	reviewed	missense	c.1685	p.P562Q	0.999	NULL	HMMPfam_SEFIR	-		
IL17RB	55540	genome.wustl.edu	37	3	53899288	53899288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53899288	53899288	G	A	SNP	IL17RB	NM_018725	human	genbank	57_37b	+1	reviewed	missense	c.1462	p.A488T	0.000	NULL	HMMPfam_SEFIR	-	no_errors	
IL7R	3575	genome.wustl.edu	37	5	35871268	35871268	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	35871268	35871268	A	G	SNP	IL7R	NM_002185	human	genbank	57_37b	+1	reviewed	missense	c.490	p.M164V	0.069	superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1	-	no_errors	
ITPK1	3705	genome.wustl.edu	37	14	93412701	93412701	+	Silent	SNP	G	G	C	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	93412701	93412701	G	C	SNP	ITPK1	NM_001142593	human	genbank	57_37b	-1	validated	silent	c.876	p.A292	0.003	HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
KLK5	25818	genome.wustl.edu	37	19	51452007	51452007	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51452007	51452007	C	A	SNP	KLK5	NM_001077491	human	genbank	57_37b	-1	reviewed	missense	c.615	p.Q205H	0.996	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
LIME1	54923	genome.wustl.edu	37	20	62370149	62370149	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62370149	62370149	G	T	SNP	LIME1	NM_017806	human	genbank	57_37b	+1	validated	missense	c.784	p.D262Y	0.003	NULL	NULL	-	no_errors	
LLGL2	3993	genome.wustl.edu	37	17	73567846	73567846	+	Missense_Mutation	SNP	C	C	T	rs1661715	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73567846	73567846	C	T	SNP	LLGL2	NM_001031803	human	genbank	57_37b	+1	reviewed	missense	c.2275	p.P759S	0.997	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-		
LOC100286917	0	genome.wustl.edu	37	12	9571035	9571035	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9571035	9571035	C	T	SNP	LOC100286917	XM_002343147	human	genbank	57_37b	+1	model	silent	c.114	p.P38	0.004	NULL	NULL	-	no_errors	
LOC388996	388996	genome.wustl.edu	37	2	91777739	91777739	+	RNA	SNP	T	T	A	rs4518004	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	91777739	91777739	T	A	SNP	LOC388996	XR_017571	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.991	-	-	-		
LOC442421	442421	genome.wustl.edu	37	9	66499770	66499770	+	RNA	SNP	G	G	T	rs75046133	byFrequency	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	66499770	66499770	G	T	SNP	LOC442421	NR_024496	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
MGAM	8972	genome.wustl.edu	37	7	141752213	141752213	+	Silent	SNP	C	C	T	rs2961085	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141752213	141752213	C	T	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	silent	c.2925	p.A975	0.094	NULL	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-		
MGAM	8972	genome.wustl.edu	37	7	141783171	141783171	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141783171	141783171	C	T	SNP	MGAM	ENST00000475668	human	ensembl	57_37b	+1	known	silent	c.6342	p.F2114	0.982	HMMPfam_Glyco_hydro_31	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors	
MYCBPAP	84073	genome.wustl.edu	37	17	48600415	48600415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48600415	48600415	G	A	SNP	MYCBPAP	NM_032133	human	genbank	57_37b	+1	validated	missense	c.1502	p.R501Q	0.969	NULL	NULL	-	no_errors	
MYH9	4627	genome.wustl.edu	37	22	36696999	36696999	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36696999	36696999	T	G	SNP	MYH9	NM_002473	human	genbank	57_37b	-1	reviewed	missense	c.2736	p.E912D	1.000	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS	-	no_errors	
NOS2	4843	genome.wustl.edu	37	17	26087755	26087755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26087755	26087755	G	A	SNP	NOS2	NM_000625	human	genbank	57_37b	-1	reviewed	silent	c.2904	p.H968	0.870	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228402602	228402602	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228402602	228402602	C	G	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.1631	p.T544S	0.968	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78369780	78369780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78369780	78369780	A	G	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.7633	p.S2545P	1.000	NULL	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OR2AG2	338755	genome.wustl.edu	37	11	6790159	6790159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6790159	6790159	G	A	SNP	OR2AG2	NM_001004490	human	genbank	57_37b	-1	provisional	silent	c.30	p.S10	0.079	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PAQR9	344838	genome.wustl.edu	37	3	142681642	142681642	+	Silent	SNP	G	A	A	rs78494654	byCluster;byFrequency;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142681642	142681642	G	A	SNP	PAQR9	NM_198504	human	genbank	57_37b	-1	validated	silent	c.537	p.G179	0.998	HMMPfam_HlyIII	HMMPfam_HlyIII	-		
PDCD11	22984	genome.wustl.edu	37	10	105173788	105173788	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105173788	105173788	C	G	SNP	PDCD11	NM_014976	human	genbank	57_37b	+1	validated	missense	c.1251	p.H417Q	1.000	superfamily_Nucleic_acid_OB,HMMSmart_S1	superfamily_Nucleic_acid_OB,HMMSmart_S1,HMMPfam_S1,superfamily_SSF48452,HMMSmart_HAT	-	no_errors	
PDE4DIP	9659	genome.wustl.edu	37	1	144930847	144930847	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144930847	144930847	G	C	SNP	PDE4DIP	NM_001002811	human	genbank	57_37b	-1	validated	missense	c.862	p.L288V	1.000	NULL	superfamily_SSF57716	-	no_errors	
PDHA2	5161	genome.wustl.edu	37	4	96762083	96762083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	96762083	96762083	G	A	SNP	PDHA2	NM_005390	human	genbank	57_37b	+1	validated	missense	c.782	p.R261H	0.696	superfamily_SSF52518,HMMPfam_E1_dh	superfamily_SSF52518,HMMPfam_E1_dh	-	no_errors	
PGCP	10404	genome.wustl.edu	37	8	98041636	98041636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	98041636	98041636	C	T	SNP	PGCP	NM_016134	human	genbank	57_37b	+1	provisional	missense	c.967	p.R323C	0.998	superfamily_SSF53187,HMMPfam_Peptidase_M28	superfamily_SSF53187,HMMPfam_Peptidase_M28	-	no_errors	
PGLYRP2	114770	genome.wustl.edu	37	19	15586540	15586540	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15586540	15586540	A	-	DEL	PGLYRP2	NM_052890	human	genbank	57_37b	-1	validated	frame_shift_del	c.941	p.F314fs	0.225	NULL	superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2	(deletion:cds_exon[15586349,15587419])	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G			TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLA2G2D	26279	genome.wustl.edu	37	1	20442903	20442903	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20442903	20442903	C	T	SNP	PLA2G2D	NM_012400	human	genbank	57_37b	-1	provisional	missense	c.108	p.M36I	0.000	HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2	HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2,PatternScan_PA2_HIS,PatternScan_PA2_ASP	-	no_errors	
PMS2L11	0	genome.wustl.edu	37	7	76610212	76610212	+	RNA	SNP	A	A	G	rs2270252	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76610212	76610212	A	G	SNP	PMS2L11	NR_023383	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.455	-	-	-		
PSME1	5720	genome.wustl.edu	37	14	24605501	24605501	+	Silent	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24605501	24605501	C	G	SNP	PSME1	NM_176783	human	genbank	57_37b	+1	reviewed	silent	c.30	p.A10	1.000	superfamily_Prot_act_regA,HMMPfam_PA28_alpha	superfamily_Prot_act_regA,HMMPfam_PA28_alpha,HMMPfam_PA28_beta	-	no_errors	
PTPN11	5781	genome.wustl.edu	37	12	112884103	112884103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112884103	112884103	G	A	SNP	PTPN11	NM_002834	human	genbank	57_37b	+1	reviewed	missense	c.38	p.G13D	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PTPN2	5771	genome.wustl.edu	37	18	12825813	12825813	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12825813	12825813	A	C	SNP	PTPN2	NM_002828	human	genbank	57_37b	-1	reviewed	missense	c.491	p.I164S	1.000	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Y_phosphatase	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PTPRN2	5799	genome.wustl.edu	37	7	157903560	157903560	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	157903560	157903560	C	T	SNP	PTPRN2	NM_002847	human	genbank	57_37b	-1	reviewed	missense	c.1604	p.R535H	0.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PYHIN1	149628	genome.wustl.edu	37	1	158943528	158943528	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158943528	158943528	C	A	SNP	PYHIN1	NM_152501	human	genbank	57_37b	+1	validated	missense	c.1451	p.S484Y	0.000	NULL	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors	
RARB	5915	genome.wustl.edu	37	3	25622057	25622057	+	Silent	SNP	A	A	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	25622057	25622057	A	T	SNP	RARB	NM_000965	human	genbank	57_37b	+1	reviewed	silent	c.630	p.R210	0.421	superfamily_Str_ncl_receptor	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
RYR1	6261	genome.wustl.edu	37	19	38960007	38960007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38960007	38960007	G	A	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.3619	p.V1207M	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SETDB1	9869	genome.wustl.edu	37	1	150923915	150923915	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150923915	150923915	C	G	SNP	SETDB1	NM_001145415	human	genbank	57_37b	+1	reviewed	missense	c.2288	p.S763C	1.000	superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET	HMMSmart_SM00333,HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317	-	no_errors	
SFI1	9814	genome.wustl.edu	37	22	31971290	31971291	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31971290	31971291	-	A	INS	SFI1	NM_001007467	human	genbank	57_37b	+1	validated	frame_shift_ins	c.996_997	p.R332fs	0.011:0.115	NULL	NULL	-	no_errors	
SGSM2	9905	genome.wustl.edu	37	17	2270688	2270688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2270688	2270688	A	G	SNP	SGSM2	NM_014853	human	genbank	57_37b	+1	validated	missense	c.1412	p.N471S	1.000	NULL	HMMPfam_RUN,HMMSmart_RUN,superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors	
SLC4A1	6521	genome.wustl.edu	37	17	42330612	42330612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42330612	42330612	C	T	SNP	SLC4A1	NM_000342	human	genbank	57_37b	-1	reviewed	missense	c.2185	p.V729M	0.997	HMMPfam_HCO3_cotransp	superfamily_PTrfase/Anion_transptr,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors	
SLITRK2	84631	genome.wustl.edu	37	X	144905067	144905067	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	144905067	144905067	C	A	SNP	SLITRK2	NM_001144003	human	genbank	57_37b	+1	reviewed	missense	c.1124	p.T375N	1.000	HMMSmart_SM00013,superfamily_L domain-like	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158582648	158582648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158582648	158582648	C	T	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	missense	c.7093	p.A2365T	1.000	superfamily_EF-hand,HMMPfam_efhand_Ca_insen	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
TAF1L	138474	genome.wustl.edu	37	9	32634816	32634817	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32634816	32634817	-	A	INS	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.762_761	p.P255fs	0.999:1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TENC1	23371	genome.wustl.edu	37	12	53453456	53453456	+	Silent	SNP	C	C	T	rs34044566	byCluster;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53453456	53453456	C	T	SNP	TENC1	NM_015319	human	genbank	57_37b	+1	reviewed	silent	c.2061	p.V687	0.999	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-		
TENC1	23371	genome.wustl.edu	37	12	53453704	53453704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53453704	53453704	C	T	SNP	TENC1	NM_015319	human	genbank	57_37b	+1	reviewed	missense	c.2309	p.A770V	0.629	NULL	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_PTB,superfamily_C2_CaLB,HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF55550,superfamily_SSF57889	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577568	7577568	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.713	p.C238F	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRERF1	55809	genome.wustl.edu	37	6	42236918	42236918	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42236918	42236918	G	A	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	silent	c.411	p.S137	0.998	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TRIB3	57761	genome.wustl.edu	37	20	371972	371972	+	Silent	SNP	T	T	C	rs6051637	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	371972	371972	T	C	SNP	TRIB3	NM_021158	human	genbank	57_37b	+1	reviewed	silent	c.333	p.Y111	0.018	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase	-		
TRIT1	54802	genome.wustl.edu	37	1	40349131	40349131	+	Silent	SNP	G	G	A	rs3845570	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40349131	40349131	G	A	SNP	TRIT1	NM_017646	human	genbank	57_37b	-1	validated	silent	c.33	p.P11	0.155	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-		
TSPAN12	23554	genome.wustl.edu	37	7	120496813	120496813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	120496813	120496813	G	A	SNP	TSPAN12	NM_012338	human	genbank	57_37b	-1	reviewed	missense	c.5	p.A2V	1.000	NULL	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors	
VANGL2	57216	genome.wustl.edu	37	1	160389022	160389022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160389022	160389022	C	T	SNP	VANGL2	NM_020335	human	genbank	57_37b	+1	validated	silent	c.423	p.C141	1.000	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors	
VSIG1	340547	genome.wustl.edu	37	X	107316029	107316029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107316029	107316029	G	A	SNP	VSIG1	NM_182607	human	genbank	57_37b	+1	reviewed	missense	c.535	p.G179R	0.908	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig	-	no_errors	
WNT5B	81029	genome.wustl.edu	37	12	1755250	1755250	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1755250	1755250	C	G	SNP	WNT5B	NM_030775	human	genbank	57_37b	+1	reviewed	missense	c.912	p.C304W	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors	
XPO1	7514	genome.wustl.edu	37	2	61720102	61720102	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61720102	61720102	G	T	SNP	XPO1	NM_003400	human	genbank	57_37b	-1	reviewed	missense	c.1332	p.F444L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1,HMMPfam_CRM1_C	-	no_errors	
ZNF295	49854	genome.wustl.edu	37	21	43411588	43411588	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12L-01A-11D-A10Y-09	TCGA-C8-A12L-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43411588	43411588	G	A	SNP	ZNF295	NM_001098402	human	genbank	57_37b	-1	validated	nonsense	c.2617	p.Q873*	0.989	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
