Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACADSB	37	genome.wustl.edu	36	10	124768583	124768583	+	Missense_Mutation	SNP	G	G	A	rs12263012	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124768583	124768583	G	A	SNP	ACADSB	NM_001609	human	genbank	57_37b	+1	reviewed	missense	c.38	p.R13K	0.008	NULL	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2	-		
AGRN	375790	genome.wustl.edu	37	1	985341	985341	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	985341	985341	G	T	SNP	AGRN	NM_198576	human	genbank	57_37b	+1	validated	silent	c.4803	p.A1601	1.000	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF	HMMPfam_NtA,superfamily_TIMP_like,HMMSmart_FOLN,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA,HMMSmart_EGF,HMMPfam_EGF,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1,PatternScan_EGF_2	-	no_errors	
ASB1	51665	genome.wustl.edu	37	2	239344412	239344412	+	Missense_Mutation	SNP	C	C	T	rs3191996	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239344412	239344412	C	T	SNP	ASB1	ENST00000438264	human	ensembl	57_37b	+1	known	missense	c.110	p.S37L	0.897	NULL	NULL	-		
ATOH1	474	genome.wustl.edu	37	4	94751069	94751069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	94751069	94751069	C	T	SNP	ATOH1	NM_005172	human	genbank	57_37b	+1	reviewed	missense	c.992	p.S331L	0.998	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
BRWD1	54014	genome.wustl.edu	37	21	40570878	40570878	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40570878	40570878	A	C	SNP	BRWD1	NM_018963	human	genbank	57_37b	-1	reviewed	missense	c.5464	p.S1822A	0.999	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
C2CD3	26005	genome.wustl.edu	37	11	73814404	73814404	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73814404	73814404	C	T	SNP	C2CD3	NM_015531	human	genbank	57_37b	-1	validated	silent	c.2352	p.T784	0.002	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	55107854	55107854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	55107854	55107854	C	T	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	missense	c.3151	p.R1051C	1.000	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CCDC135	84229	genome.wustl.edu	37	16	57752290	57752290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57752290	57752290	G	A	SNP	CCDC135	NM_032269	human	genbank	57_37b	+1	validated	missense	c.1109	p.R370K	0.989	NULL	NULL	-	no_errors	
CCDC136	64753	genome.wustl.edu	37	7	128452972	128452972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128452972	128452972	G	A	SNP	CCDC136	NM_022742	human	genbank	57_37b	+1	validated	missense	c.2752	p.D918N	0.719	superfamily_Spectrin repeat	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors	
CD163L1	283316	genome.wustl.edu	37	12	7521559	7521559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7521559	7521559	G	T	SNP	CD163L1	NM_174941	human	genbank	57_37b	-1	reviewed	missense	c.4042	p.Q1348K	0.043	superfamily_SRCR-like	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors	
CD19	930	genome.wustl.edu	37	16	28948420	28948420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28948420	28948420	G	A	SNP	CD19	NM_001770	human	genbank	57_37b	+1	reviewed	silent	c.1161	p.A387	0.217	NULL	superfamily_SSF48726,HMMSmart_IG	-	no_errors	
CD84	8832	genome.wustl.edu	37	1	160519760	160519760	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160519760	160519760	A	T	SNP	CD84	NM_003874	human	genbank	57_37b	-1	provisional	missense	c.868	p.S290T	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
CDK12	0	genome.wustl.edu	37	17	37682239	37682239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37682239	37682239	C	T	SNP	CDK12	NM_016507	human	genbank	57_37b	+1	validated	missense	c.3430	p.P1144S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CNTN3	5067	genome.wustl.edu	37	3	74418526	74418526	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	74418526	74418526	T	C	SNP	CNTN3	NM_020872	human	genbank	57_37b	-1	validated	splice_site	c.762-2	e7-2	1.000	-	-	-	no_errors	
COL6A6	131873	genome.wustl.edu	37	3	130313159	130313159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130313159	130313159	G	A	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.4505	p.R1502H	0.003	HMMPfam_Collagen	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CPA3	1359	genome.wustl.edu	37	3	148601470	148601470	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148601470	148601470	G	A	SNP	CPA3	NM_001870	human	genbank	57_37b	+1	reviewed	silent	c.849	p.T283	0.972	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors	
CPNE7	27132	genome.wustl.edu	37	16	89663025	89663025	+	Missense_Mutation	SNP	C	C	T	rs3751682	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89663025	89663025	C	T	SNP	CPNE7	NM_014427	human	genbank	57_37b	+1	reviewed	missense	c.1898	p.P633L	0.000	NULL	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine	-		
CXCL6	6372	genome.wustl.edu	37	4	74702958	74702958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74702958	74702958	C	T	SNP	CXCL6	NM_002993	human	genbank	57_37b	+1	validated	missense	c.281	p.P94L	1.000	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CXC	-	no_errors	
EEF1A2	1917	genome.wustl.edu	37	20	62126185	62126185	+	Silent	SNP	A	G	G	rs310617	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62126185	62126185	A	G	SNP	EEF1A2	NM_001958	human	genbank	57_37b	-1	reviewed	silent	c.594	p.G198	0.004	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-		
ENSG00000222830	0	genome.wustl.edu	37	15	78209131	78209131	+	RNA	SNP	T	T	C	rs7161792	byCluster;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78209131	78209131	T	C	SNP	ENSG00000222830	ENST00000410898	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002	-	-	-		
ENSG00000232340	0	genome.wustl.edu	37	2	145153923	145153923	+	RNA	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	145153923	145153923	T	C	SNP	ENSG00000232340	ENST00000446127	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	
ENSG00000245574	0	genome.wustl.edu	37	17	38545491	38545491	+	RNA	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38545491	38545491	A	G	SNP	ENSG00000245574	ENST00000499154	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
GAB3	139716	genome.wustl.edu	37	X	153924213	153924213	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153924213	153924213	G	A	SNP	GAB3	NM_001081573	human	genbank	57_37b	-1	reviewed	silent	c.1509	p.D503	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
GON4L	54856	genome.wustl.edu	37	1	155823258	155823258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155823258	155823258	A	G	SNP	GON4L	NM_001037533	human	genbank	57_37b	-1	validated	missense	c.314	p.L105P	0.017	NULL	superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like	-	no_errors	
HIST3H3	8290	genome.wustl.edu	37	1	228612911	228612911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228612911	228612911	G	A	SNP	HIST3H3	NM_003493	human	genbank	57_37b	-1	reviewed	missense	c.116	p.P39L	1.000	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone	-	no_errors	
IFT88	8100	genome.wustl.edu	37	13	21165111	21165111	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21165111	21165111	G	T	SNP	IFT88	NM_175605	human	genbank	57_37b	+1	reviewed	missense	c.243	p.K81N	1.000	NULL	HMMSmart_SM00028,superfamily_TPR-like,HMMSmart_SM00671,HMMPfam_TPR_1	-	no_errors	
IRF2BP1	26145	genome.wustl.edu	37	19	46388379	46388379	+	Silent	SNP	C	C	G	rs3826892	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46388379	46388379	C	G	SNP	IRF2BP1	NM_015649	human	genbank	57_37b	-1	provisional	silent	c.654	p.R218	0.992	NULL	superfamily_SSF57850	-		
IRF3	3661	genome.wustl.edu	37	19	50163080	50163080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50163080	50163080	G	A	SNP	IRF3	NM_001571	human	genbank	57_37b	-1	validated	missense	c.1109	p.T370M	0.669	superfamily_SMAD_FHA,HMMPfam_IRF-3	HMMSmart_IRF,superfamily_SSF46785,HMMPfam_IRF,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3	-	no_errors	
ITGA5	3678	genome.wustl.edu	37	12	54799461	54799461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54799461	54799461	C	T	SNP	ITGA5	NM_002205	human	genbank	57_37b	-1	reviewed	missense	c.1003	p.V335I	0.057	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
ITIH3	3699	genome.wustl.edu	37	3	52833413	52833413	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52833413	52833413	T	A	SNP	ITIH3	NM_002217	human	genbank	57_37b	+1	validated	missense	c.815	p.F272Y	1.000	NULL	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors	
KDM6B	23135	genome.wustl.edu	37	17	7750214	7750214	+	Silent	SNP	A	A	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7750214	7750214	A	C	SNP	KDM6B	NM_001080424	human	genbank	57_37b	+1	provisional	silent	c.789	p.P263	0.988	NULL	HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors	
KIAA1210	57481	genome.wustl.edu	37	X	118223625	118223625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118223625	118223625	C	T	SNP	KIAA1210	NM_020721	human	genbank	57_37b	-1	validated	missense	c.1568	p.R523Q	0.000	NULL	NULL	-	no_errors	
KLHDC8B	200942	genome.wustl.edu	37	3	49212375	49212375	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49212375	49212375	G	C	SNP	KLHDC8B	NM_173546	human	genbank	57_37b	+1	provisional	missense	c.742	p.V248L	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors	
LBXCOR1	390598	genome.wustl.edu	37	15	68118406	68118406	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	68118406	68118406	G	A	SNP	LBXCOR1	NM_001031807	human	genbank	57_37b	+1	provisional	silent	c.213	p.T71	0.991	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	-	no_errors	
LOC100287744	0	genome.wustl.edu	37	5	76128711	76128711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	76128711	76128711	C	T	SNP	LOC100287744	XM_002342529	human	genbank	57_37b	-1	model	missense	c.403	p.V135I	0.952	NULL	NULL	-	no_errors	
LRRC7	57554	genome.wustl.edu	37	1	70505050	70505050	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	70505050	70505050	C	T	SNP	LRRC7	NM_020794	human	genbank	57_37b	+1	validated	silent	c.3429	p.Y1143	0.988	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
NLGN3	54413	genome.wustl.edu	37	X	70375070	70375070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70375070	70375070	G	A	SNP	NLGN3	NM_018977	human	genbank	57_37b	+1	reviewed	missense	c.524	p.R175Q	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
NOS2	4843	genome.wustl.edu	37	17	26087691	26087691	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26087691	26087691	G	T	SNP	NOS2	NM_000625	human	genbank	57_37b	-1	reviewed	missense	c.2968	p.R990S	1.000	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
PCDHB7	56129	genome.wustl.edu	37	5	140553707	140553707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140553707	140553707	C	A	SNP	PCDHB7	NM_018940	human	genbank	57_37b	+1	reviewed	missense	c.1291	p.L431M	0.992	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	no_errors	
PEAR1	375033	genome.wustl.edu	37	1	156877797	156877797	+	Silent	SNP	C	C	A	rs77235035	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156877797	156877797	C	A	SNP	PEAR1	NM_001080471	human	genbank	57_37b	+1	provisional	silent	c.856	p.R286	0.992	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam	HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept	-		
PNO1	56902	genome.wustl.edu	37	2	68385097	68385097	+	Missense_Mutation	SNP	A	A	G	rs2044693	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	68385097	68385097	A	G	SNP	PNO1	NM_020143	human	genbank	57_37b	+1	provisional	missense	c.31	p.R11G	0.004	NULL	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-		
POLRMT	5442	genome.wustl.edu	37	19	621712	621712	+	Silent	SNP	A	G	G	rs2238547	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	621712	621712	A	G	SNP	POLRMT	NM_005035	human	genbank	57_37b	-1	reviewed	silent	c.1986	p.A662	1.000	superfamily_SSF56672	superfamily_SSF56672,HMMPfam_RNA_pol,PatternScan_RNA_POL_PHAGE_1,PatternScan_RNA_POL_PHAGE_2	-		
PPM1H	57460	genome.wustl.edu	37	12	63042362	63042362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	63042362	63042362	G	A	SNP	PPM1H	NM_020700	human	genbank	57_37b	-1	validated	silent	c.1452	p.D484	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	-	no_errors	
PRIC285	85441	genome.wustl.edu	37	20	62195087	62195087	+	Silent	SNP	A	A	G	rs310630	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62195087	62195087	A	G	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	silent	c.5088	p.S1696	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-		
PRPF38A	84950	genome.wustl.edu	37	1	52871475	52871475	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	52871475	52871475	A	G	SNP	PRPF38A	NM_032864	human	genbank	57_37b	+1	validated	missense	c.254	p.D85G	1.000	HMMPfam_PRP38	HMMPfam_PRP38	-	no_errors	
PTCH1	5727	genome.wustl.edu	37	9	98209699	98209699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98209699	98209699	G	A	SNP	PTCH1	NM_000264	human	genbank	57_37b	-1	reviewed	missense	c.3839	p.S1280L	0.006	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
ROBO1	6091	genome.wustl.edu	37	3	78666899	78666899	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	78666899	78666899	C	G	SNP	ROBO1	NM_002941	human	genbank	57_37b	-1	reviewed	missense	c.4168	p.V1390L	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
SIRT6	51548	genome.wustl.edu	37	19	4180836	4180836	+	Missense_Mutation	SNP	C	C	T	rs352493	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4180836	4180836	C	T	SNP	SIRT6	NM_016539	human	genbank	57_37b	-1	reviewed	missense	c.137	p.S46N	0.061	superfamily_DHS-like NAD/FAD-binding domain	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	-		
SKIL	6498	genome.wustl.edu	37	3	170078980	170078980	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170078980	170078980	G	T	SNP	SKIL	NM_005414	human	genbank	57_37b	+1	validated	silent	c.861	p.P287	0.002	superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	-	no_errors	
SMC4	10051	genome.wustl.edu	37	3	160146661	160146661	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160146661	160146661	T	G	SNP	SMC4	NM_001002800	human	genbank	57_37b	+1	validated	missense	c.2726	p.I909R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Prefoldin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors	
SMG1	23049	genome.wustl.edu	37	16	18830918	18830918	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18830918	18830918	G	T	SNP	SMG1	NM_015092	human	genbank	57_37b	-1	reviewed	missense	c.9800	p.A3267D	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
TG	7038	genome.wustl.edu	37	8	134145742	134145742	+	Missense_Mutation	SNP	C	C	T	rs114613744	by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134145742	134145742	C	T	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	missense	c.8026	p.R2676W	0.067	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-		
TP53	7157	genome.wustl.edu	37	17	7578272	7578272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578272	7578272	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.577	p.H193Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRIB3	57761	genome.wustl.edu	37	20	377082	377082	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	377082	377082	C	T	SNP	TRIB3	NM_021158	human	genbank	57_37b	+1	reviewed	silent	c.825	p.R275	0.003	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179477701	179477701	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179477701	179477701	T	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.42043	p.I14015V	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179611635	179611635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179611635	179611635	G	A	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	silent	c.15492	p.S5164	0.000	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
UBR4	23352	genome.wustl.edu	37	1	19481474	19481474	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19481474	19481474	G	A	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	silent	c.6396	p.F2132	0.998	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors	
WDR49	151790	genome.wustl.edu	37	3	167223187	167223187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	167223187	167223187	T	C	SNP	WDR49	NM_178824	human	genbank	57_37b	-1	provisional	missense	c.1736	p.D579G	0.282	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
WDR78	79819	genome.wustl.edu	37	1	67299695	67299695	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67299695	67299695	G	A	SNP	WDR78	NM_024763	human	genbank	57_37b	-1	validated	nonsense	c.1870	p.R624*	0.719	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZER1	10444	genome.wustl.edu	37	9	131513756	131513756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131513756	131513756	G	A	SNP	ZER1	NM_006336	human	genbank	57_37b	-1	provisional	missense	c.974	p.P325L	0.999	NULL	superfamily_SSF52047,superfamily_ARM-type_fold	-	no_errors	
ZNF423	23090	genome.wustl.edu	37	16	49671218	49671218	+	Silent	SNP	C	C	T	rs16947741	byCluster;byFrequency;by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	49671218	49671218	C	T	SNP	ZNF423	NM_015069	human	genbank	57_37b	-1	reviewed	silent	c.1845	p.P615	0.066	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
