Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
A2M	2	genome.wustl.edu	37	12	9242995	9242995	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9242995	9242995	G	A	SNP	A2M	NM_000014	human	genbank	57_37b	-1	reviewed	silent	c.2553	p.N851	0.003	NULL	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors	
ACER3	55331	genome.wustl.edu	37	11	76696702	76696702	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76696702	76696702	G	T	SNP	ACER3	NM_018367	human	genbank	57_37b	+1	validated	missense	c.336	p.K112N	0.928	HMMPfam_aPHC	HMMPfam_aPHC	-	no_errors	
ALS2CR11	151254	genome.wustl.edu	37	2	202356525	202356525	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202356525	202356525	T	C	SNP	ALS2CR11	ENST00000439140	human	ensembl	57_37b	-1	known	silent	c.4539	p.Q1513	0.018	NULL	NULL	-	no_errors	
ANKFN1	162282	genome.wustl.edu	37	17	54431265	54431265	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	54431265	54431265	C	T	SNP	ANKFN1	NM_153228	human	genbank	57_37b	+1	validated	silent	c.468	p.L156	0.988	superfamily_Ankyrin repeat,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMSmart_SM00248,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
AQP12A	375318	genome.wustl.edu	37	2	241631799	241631799	+	Silent	SNP	C	T	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241631799	241631799	C	T	SNP	AQP12A	NM_198998	human	genbank	57_37b	+1	provisional	silent	c.432	p.R144	0.071	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors	
ASB10	136371	genome.wustl.edu	37	7	150873246	150873246	+	Missense_Mutation	SNP	G	G	A	rs3800791	byCluster;byFrequency;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150873246	150873246	G	A	SNP	ASB10	NM_001142459	human	genbank	57_37b	-1	reviewed	missense	c.1492	p.R498C	0.022	HMMPfam_SOCS_box	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_SOCS_box	-		
ATP2B2	491	genome.wustl.edu	37	3	10387757	10387757	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10387757	10387757	G	A	SNP	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	silent	c.2469	p.N823	0.992	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_HAD-like	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
BRMS1	25855	genome.wustl.edu	37	11	66105190	66105190	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66105190	66105190	C	T	SNP	BRMS1	NM_001024957	human	genbank	57_37b	-1	reviewed	nonsense	c.822	p.W274*	0.009	NULL	HMMPfam_Sds3	-	no_errors	
C4orf50	0	genome.wustl.edu	37	4	5977632	5977632	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5977632	5977632	G	A	SNP	C4orf50	NM_207405	human	genbank	57_37b	-1	predicted	silent	c.219	p.P73	0.496	NULL	NULL	-	no_errors	
CCDC136	64753	genome.wustl.edu	37	7	128444776	128444776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128444776	128444776	G	A	SNP	CCDC136	NM_022742	human	genbank	57_37b	+1	validated	missense	c.743	p.S248N	1.000	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors	
CPEB1	64506	genome.wustl.edu	37	15	83224732	83224732	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83224732	83224732	A	C	SNP	CPEB1	NM_030594	human	genbank	57_37b	-1	reviewed	missense	c.747	p.S249R	0.111	NULL	superfamily_SSF54928	-	no_errors	
CTTNBP2	83992	genome.wustl.edu	37	7	117431308	117431308	+	Missense_Mutation	SNP	G	G	T	rs116692992	by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117431308	117431308	G	T	SNP	CTTNBP2	NM_033427	human	genbank	57_37b	-1	reviewed	missense	c.1942	p.Q648K	1.000	NULL	HMMPfam_CortBP2,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
DAAM2	23500	genome.wustl.edu	37	6	39832810	39832810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	39832810	39832810	G	A	SNP	DAAM2	NM_015345	human	genbank	57_37b	+1	validated	missense	c.388	p.V130M	0.995	HMMPfam_Drf_GBD	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors	
ENSG00000196922	0	genome.wustl.edu	37	8	146202406	146202406	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	146202406	146202406	T	C	SNP	ENSG00000196922	ENST00000355436	human	ensembl	57_37b	-1	known	missense	c.1442	p.E481G	0.817	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
EPRS	2058	genome.wustl.edu	37	1	220152916	220152916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	220152916	220152916	C	T	SNP	EPRS	NM_004446	human	genbank	57_37b	-1	reviewed	missense	c.3753	p.M1251I	1.000	superfamily_SSF55681	superfamily_GST_C_like,superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1c_C,superfamily_Ribosomal_L25rel,superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon,superfamily_Pro-tRNA_synth_II_C,HMMPfam_ProRS-C_1	-	no_errors	
FASTK	10922	genome.wustl.edu	37	7	150774052	150774052	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150774052	150774052	G	C	SNP	FASTK	NM_006712	human	genbank	57_37b	-1	reviewed	missense	c.1490	p.S497W	0.996	HMMPfam_RAP	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
GAGE13	645051	genome.wustl.edu	37	X	49192696	49192696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49192696	49192696	C	T	SNP	GAGE13	NM_001098412	human	genbank	57_37b	+1	validated	missense	c.209	p.P70L	0.009	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors	
GPM6B	2824	genome.wustl.edu	37	X	13834993	13834993	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13834993	13834993	C	G	SNP	GPM6B	NM_001001995	human	genbank	57_37b	-1	reviewed	missense	c.31	p.E11Q	1.000	NULL	HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1,HMMSmart_PLP,PatternScan_MYELIN_PLP_2	-	no_errors	
IRGC	56269	genome.wustl.edu	37	19	44222997	44222997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44222997	44222997	C	T	SNP	IRGC	NM_019612	human	genbank	57_37b	+1	validated	missense	c.287	p.P96L	0.002	superfamily_SSF52540,HMMPfam_IIGP	superfamily_SSF52540,HMMPfam_IIGP	-	no_errors	
LIM2	3982	genome.wustl.edu	37	19	51890496	51890496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51890496	51890496	G	A	SNP	LIM2	NM_030657	human	genbank	57_37b	-1	reviewed	missense	c.202	p.R68C	0.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_PMP22_2	-	no_errors	
LNX1	84708	genome.wustl.edu	37	4	54362438	54362438	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	54362438	54362438	G	T	SNP	LNX1	NM_001126328	human	genbank	57_37b	-1	reviewed	missense	c.1102	p.Q368K	0.030	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
LOC643219	643219	genome.wustl.edu	37	2	96464384	96464384	+	RNA	SNP	A	A	G	rs28626836	by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96464384	96464384	A	G	SNP	LOC643219	XR_016369	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.998	-	-	-		
LOC644950	0	genome.wustl.edu	37	3	109128692	109128692	+	Missense_Mutation	SNP	C	C	T	rs808802	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	109128692	109128692	C	T	SNP	LOC644950	XM_001717224	human	genbank	57_37b	-1	model	missense	c.259	p.D87N	1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	-		
LRBA	987	genome.wustl.edu	37	4	151793884	151793884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151793884	151793884	G	A	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	missense	c.2189	p.S730L	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
LSG1	55341	genome.wustl.edu	37	3	194387183	194387183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	194387183	194387183	C	T	SNP	LSG1	NM_018385	human	genbank	57_37b	-1	reviewed	silent	c.345	p.R115	0.879	NULL	superfamily_SSF52540,HMMPfam_MMR_HSR1	-	no_errors	
MTHFD1	4522	genome.wustl.edu	37	14	64898264	64898264	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64898264	64898264	C	A	SNP	MTHFD1	NM_005956	human	genbank	57_37b	+1	reviewed	silent	c.1326	p.L442	1.000	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Aminoacid dehydrogenase-like N-terminal domain,HMMPfam_THF_DHG_CYH,PatternScan_THF_DHG_CYH_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C,PatternScan_THF_DHG_CYH_2,HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_FTHFS_1,PatternScan_FTHFS_2	-	no_errors	
MYH14	79784	genome.wustl.edu	37	19	50771580	50771580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50771580	50771580	C	T	SNP	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	missense	c.2890	p.R964C	0.989	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152410473	152410473	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152410473	152410473	T	C	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.14392	p.M4798V	1.000	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NTNG2	84628	genome.wustl.edu	37	9	135073714	135073714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135073714	135073714	G	A	SNP	NTNG2	NM_032536	human	genbank	57_37b	+1	validated	missense	c.575	p.R192H	1.000	HMMSmart_SM00136,HMMPfam_Laminin_N	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2	-	no_errors	
NXN	64359	genome.wustl.edu	37	17	722712	722712	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	722712	722712	G	T	SNP	NXN	NM_022463	human	genbank	57_37b	-1	validated	silent	c.787	p.R263	1.000	superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA	superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA	-	no_errors	
OR52J3	119679	genome.wustl.edu	37	11	5067871	5067871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5067871	5067871	T	C	SNP	OR52J3	NM_001001916	human	genbank	57_37b	+1	validated	missense	c.116	p.V39A	0.126	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PARD6A	50855	genome.wustl.edu	37	16	67695950	67695950	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67695950	67695950	C	T	SNP	PARD6A	NM_016948	human	genbank	57_37b	+1	reviewed	silent	c.441	p.D147	0.998	superfamily_PDZ domain-like	HMMPfam_PB1,HMMSmart_SM00666,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
PC	5091	genome.wustl.edu	37	11	66631396	66631396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66631396	66631396	C	T	SNP	PC	NM_000920	human	genbank	57_37b	-1	reviewed	missense	c.1217	p.R406H	1.000	superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_SSF51569,HMMPfam_HMGL-like,HMMPfam_PYC_OADA,superfamily_SSF89000,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors	
PCBP2	5094	genome.wustl.edu	37	12	53849274	53849274	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53849274	53849274	G	A	SNP	PCBP2	NM_005016	human	genbank	57_37b	+1	reviewed	silent	c.123	p.E41	0.980	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors	
PLCD1	5333	genome.wustl.edu	37	3	38051418	38051429	+	In_Frame_Del	DEL	TGACCCCATCCA	TGACCCCATCCA	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	TGACCCCATCCA	TGACCCCATCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38051418	38051429	TGACCCCATCCA	-	DEL	PLCD1	NM_001130964	human	genbank	57_37b	-1	validated	in_frame_del	c.1327_1316	p.LDGVT439in_frame_delP	0.001:0.000:0.000:0.001:0.000:0.007:0.007:0.003:0.992:0.996:0.988:0.991	HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_EFh,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	(deletion:cds_exon[38051395,38051544])	no_errors	
PLEKHA8	84725	genome.wustl.edu	37	7	30113706	30113706	+	Silent	SNP	A	G	G	rs11977829	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	30113706	30113706	A	G	SNP	PLEKHA8	ENST00000436767	human	ensembl	57_37b	+1	known	silent	c.1323	p.T441	0.015	superfamily_Glycolipid transfer protein GLTP,HMMPfam_GLTP	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_Glycolipid transfer protein GLTP,HMMPfam_GLTP	-		
PTPRM	5797	genome.wustl.edu	37	18	8376551	8376551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8376551	8376551	G	A	SNP	PTPRM	NM_001105244	human	genbank	57_37b	+1	reviewed	missense	c.3418	p.V1140I	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RARB	5915	genome.wustl.edu	37	3	25542765	25542765	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	25542765	25542765	C	A	SNP	RARB	NM_000965	human	genbank	57_37b	+1	reviewed	nonsense	c.399	p.C133*	1.000	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_Str_ncl_receptor	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
REV3L	5980	genome.wustl.edu	37	6	111696389	111696389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	111696389	111696389	T	C	SNP	REV3L	NM_002912	human	genbank	57_37b	-1	validated	missense	c.3169	p.K1057E	1.000	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like,HMMSmart_SM00486,HMMPfam_DNA_pol_B_exo,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B	-	no_errors	
RREB1	6239	genome.wustl.edu	37	6	7211836	7211836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7211836	7211836	G	A	SNP	RREB1	NM_001003699	human	genbank	57_37b	+1	reviewed	missense	c.601	p.E201K	0.498	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
SHANK2	22941	genome.wustl.edu	37	11	70333654	70333654	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	70333654	70333654	C	A	SNP	SHANK2	NM_012309	human	genbank	57_37b	-1	reviewed	missense	c.959	p.R320I	0.898	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SHANK3	85358	genome.wustl.edu	37	22	51143180	51143180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	51143180	51143180	G	A	SNP	SHANK3	NM_001080420	human	genbank	57_37b	+1	reviewed	missense	c.1834	p.E612K	1.000	superfamily_PDZ domain-like,HMMSmart_SM00228	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
SLC22A3	6581	genome.wustl.edu	37	6	160864753	160864753	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160864753	160864753	G	T	SNP	SLC22A3	NM_021977	human	genbank	57_37b	+1	reviewed	nonsense	c.1489	p.E497*	0.999	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
SLC22A9	114571	genome.wustl.edu	37	11	63175599	63175599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63175599	63175599	G	A	SNP	SLC22A9	NM_080866	human	genbank	57_37b	+1	validated	missense	c.1304	p.R435H	0.005	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SLMAP	7871	genome.wustl.edu	37	3	57908744	57908745	+	In_Frame_Ins	INS	-	-	AAT	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57908744	57908745	-	AAT	INS	SLMAP	NM_007159	human	genbank	57_37b	+1	validated	in_frame_ins	c.2337_2338	p.781in_frame_insN	1.000:1.000	NULL	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_Prefoldin_2,PatternScan_FETUIN_2	-	no_errors	
STAB1	23166	genome.wustl.edu	37	3	52552806	52552806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52552806	52552806	G	A	SNP	STAB1	NM_015136	human	genbank	57_37b	+1	reviewed	missense	c.4955	p.R1652Q	0.957	superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FAS1 domain,HMMSmart_SM00554,HMMPfam_Fasciclin,PatternScan_CYTOCHROME_P450,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	no_errors	
STIM1	6786	genome.wustl.edu	37	11	4112595	4112595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4112595	4112595	G	A	SNP	STIM1	NM_003156	human	genbank	57_37b	+1	reviewed	missense	c.1625	p.R542H	1.000	NULL	PatternScan_EF_HAND_1,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2	-	no_errors	
TDRD5	163589	genome.wustl.edu	37	1	179604942	179604942	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179604942	179604942	C	A	SNP	TDRD5	NM_173533	human	genbank	57_37b	+1	provisional	silent	c.1440	p.I480	0.721	HMMPfam_TUDOR	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors	
TEX15	56154	genome.wustl.edu	37	8	30700783	30700783	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30700783	30700783	T	C	SNP	TEX15	NM_031271	human	genbank	57_37b	-1	validated	silent	c.5751	p.L1917	0.002	NULL	NULL	-	no_errors	
TMTC2	160335	genome.wustl.edu	37	12	83251115	83251115	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	83251115	83251115	T	G	SNP	TMTC2	NM_152588	human	genbank	57_37b	+1	provisional	missense	c.410	p.V137G	1.000	NULL	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7576924	7576925	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576924	7576925	GT	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.922_921	p.L308fs	0.955:0.952	NULL	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7576853,7576926])	no_errors	
TPST2	8459	genome.wustl.edu	37	22	26937270	26937270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26937270	26937270	C	T	SNP	TPST2	NM_001008566	human	genbank	57_37b	-1	reviewed	missense	c.327	p.M109I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
TRAPPC10	7109	genome.wustl.edu	37	21	45475668	45475668	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45475668	45475668	T	-	DEL	TRAPPC10	NM_003274	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.572	p.M192fs	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	(deletion:cds_exon[45475579,45475774])	no_errors	
VASN	114990	genome.wustl.edu	37	16	4432029	4432029	+	Missense_Mutation	SNP	A	C	C	rs3810818	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4432029	4432029	A	C	SNP	VASN	NM_138440	human	genbank	57_37b	+1	validated	missense	c.1151	p.E384A	0.460	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-		
ZDBF2	57683	genome.wustl.edu	37	2	207174608	207174608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207174608	207174608	G	T	SNP	ZDBF2	NM_020923	human	genbank	57_37b	+1	validated	missense	c.5356	p.D1786Y	0.000	NULL	HMMPfam_zf-DBF	-	no_errors	
ZNF311	282890	genome.wustl.edu	37	6	28963248	28963248	+	Missense_Mutation	SNP	T	T	G	rs115845052	byCluster;by1000genomes	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28963248	28963248	T	G	SNP	ZNF311	NM_001010877	human	genbank	57_37b	-1	provisional	missense	c.1531	p.K511Q	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
ZNF695	57116	genome.wustl.edu	37	1	247151327	247151327	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247151327	247151327	C	A	SNP	ZNF695	NM_020394	human	genbank	57_37b	-1	validated	missense	c.490	p.G164C	0.563	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNFX1	57169	genome.wustl.edu	37	20	47865218	47865218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A138-01A-11D-A10Y-09	TCGA-C8-A138-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47865218	47865218	G	A	SNP	ZNFX1	NM_021035	human	genbank	57_37b	-1	validated	missense	c.4343	p.S1448F	1.000	HMMPfam_zf-NF-X1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_zf-NF-X1,HMMSmart_SM00438	-	no_errors	
