Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ALDH1A1	216	genome.wustl.edu	37	9	75540487	75540487	+	Silent	SNP	A	A	C	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	75540487	75540487	A	C	SNP	ALDH1A1	NM_000689	human	genbank	57_37b	-1	reviewed	silent	c.546	p.P182	0.990	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ALDOB	229	genome.wustl.edu	37	9	104193120	104193120	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104193120	104193120	G	A	SNP	ALDOB	NM_000035	human	genbank	57_37b	-1	reviewed	missense	c.50	p.S17L	0.986	superfamily_Aldolase,HMMPfam_Glycolytic	superfamily_Aldolase,HMMPfam_Glycolytic,PatternScan_ALDOLASE_CLASS_I	-	no_errors	
ATP9A	10079	genome.wustl.edu	37	20	50329531	50329532	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50329531	50329532	-	G	INS	ATP9A	NM_006045	human	genbank	57_37b	-1	validated	frame_shift_ins	c.410_409	p.Q137fs	1.000:1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
C17orf68	80169	genome.wustl.edu	37	17	8151340	8151340	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8151340	8151340	C	A	SNP	C17orf68	NM_025099	human	genbank	57_37b	-1	validated	silent	c.15	p.R5	0.000	NULL	NULL	-	no_errors	
C7orf41	222166	genome.wustl.edu	37	7	30197080	30197080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	30197080	30197080	C	T	SNP	C7orf41	NM_152793	human	genbank	57_37b	+1	validated	silent	c.312	p.D104	0.972	NULL	NULL	-	no_errors	
CCDC115	84317	genome.wustl.edu	37	2	131099725	131099727	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131099725	131099727	CTT	-	DEL	CCDC115	ENST00000437688	human	ensembl	57_37b	-1	known	in_frame_del	c.78_76	p.K26in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[131099707,131099802])	no_errors	
CD1E	913	genome.wustl.edu	37	1	158326560	158326560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158326560	158326560	C	T	SNP	CD1E	NM_030893	human	genbank	57_37b	+1	reviewed	silent	c.1041	p.V347	0.000	NULL	superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
COL6A2	1292	genome.wustl.edu	37	21	47539719	47539719	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47539719	47539719	C	T	SNP	COL6A2	NM_001849	human	genbank	57_37b	+1	reviewed	silent	c.1287	p.P429	0.258	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CORO7	79585	genome.wustl.edu	37	16	4412030	4412030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4412030	4412030	C	T	SNP	CORO7	NM_024535	human	genbank	57_37b	-1	validated	missense	c.1534	p.A512T	1.000	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1	-	no_errors	
DENND1A	57706	genome.wustl.edu	37	9	126429352	126429354	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126429352	126429354	AAG	-	DEL	DENND1A	NM_020946	human	genbank	57_37b	-1	validated	in_frame_del	c.460_458	p.S153in_frame_del	1.000:1.000:1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	(deletion:cds_exon[126429305,126429358])	no_errors	
DNM1	1759	genome.wustl.edu	37	9	130996358	130996358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130996358	130996358	G	A	SNP	DNM1	NM_004408	human	genbank	57_37b	+1	reviewed	missense	c.1394	p.R465Q	1.000	HMMPfam_Dynamin_M	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302	-	no_errors	
DOPEY1	23033	genome.wustl.edu	37	6	83863703	83863703	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83863703	83863703	A	T	SNP	DOPEY1	NM_015018	human	genbank	57_37b	+1	validated	missense	c.6330	p.E2110D	1.000	NULL	HMMPfam_Dopey_N	-	no_errors	
DPY19L2	283417	genome.wustl.edu	37	12	64055199	64055199	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64055199	64055199	C	T	SNP	DPY19L2	NM_173812	human	genbank	57_37b	-1	validated	nonsense	c.513	p.W171*	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors	
EGFR	1956	genome.wustl.edu	37	7	55259482	55259482	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	55259482	55259482	C	A	SNP	EGFR	NM_005228	human	genbank	57_37b	+1	reviewed	missense	c.2540	p.T847K	0.999	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
EIF3G	8666	genome.wustl.edu	37	19	10226169	10226169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10226169	10226169	G	A	SNP	EIF3G	NM_003755	human	genbank	57_37b	-1	validated	silent	c.933	p.N311	0.983	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
EMB	133418	genome.wustl.edu	37	5	49736887	49736887	+	Silent	SNP	G	G	A	rs75391720	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	49736887	49736887	G	A	SNP	EMB	NM_198449	human	genbank	57_37b	-1	reviewed	silent	c.99	p.D33	0.001	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409	-		
EPHA5	2044	genome.wustl.edu	37	4	66197758	66197758	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	66197758	66197758	G	A	SNP	EPHA5	NM_004439	human	genbank	57_37b	-1	reviewed	missense	c.2941	p.R981W	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,HMMPfam_BmKX,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
ESRP2	80004	genome.wustl.edu	37	16	68265420	68265420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68265420	68265420	G	A	SNP	ESRP2	NM_024939	human	genbank	57_37b	-1	validated	missense	c.1477	p.R493W	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ETS1	2113	genome.wustl.edu	37	11	128354830	128354830	+	Silent	SNP	G	G	C	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	128354830	128354830	G	C	SNP	ETS1	NM_001143820	human	genbank	57_37b	-1	validated	silent	c.750	p.P250	0.796	NULL	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors	
FAM75C1	441452	genome.wustl.edu	37	9	90537720	90537720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90537720	90537720	G	A	SNP	FAM75C1	NM_001145124	human	genbank	57_37b	+1	validated	silent	c.2898	p.R966	0.006	NULL	NULL	-	no_errors	
FBXO25	26260	genome.wustl.edu	37	8	413124	413124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	413124	413124	C	T	SNP	FBXO25	NM_183421	human	genbank	57_37b	+1	reviewed	missense	c.961	p.R321W	0.993	NULL	NULL	-	no_errors	
FHOD3	80206	genome.wustl.edu	37	18	34238119	34238119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34238119	34238119	C	T	SNP	FHOD3	NM_025135	human	genbank	57_37b	+1	validated	silent	c.1278	p.S426	0.000	NULL	superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors	
FKSG83	83954	genome.wustl.edu	37	6	27293123	27293123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27293123	27293123	C	T	SNP	FKSG83	NM_032030	human	genbank	57_37b	+1	validated	missense	c.62	p.S21F	0.000	NULL	HMMPfam_V1R	-	no_errors	
FKSG83	83954	genome.wustl.edu	37	6	27293194	27293194	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27293194	27293194	C	G	SNP	FKSG83	NM_032030	human	genbank	57_37b	+1	validated	missense	c.133	p.Q45E	0.000	NULL	HMMPfam_V1R	-	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41033173	41033173	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41033173	41033173	G	A	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	silent	c.2331	p.S777	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
HGFAC	3083	genome.wustl.edu	37	4	3445881	3445881	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3445881	3445881	C	T	SNP	HGFAC	NM_001528	human	genbank	57_37b	+1	reviewed	silent	c.591	p.C197	0.007	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1	superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_FN1,PatternScan_EGF_2,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
KIAA0922	23240	genome.wustl.edu	37	4	154479493	154479493	+	Silent	SNP	C	C	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	154479493	154479493	C	G	SNP	KIAA0922	NM_015196	human	genbank	57_37b	+1	validated	silent	c.633	p.V211	0.983	NULL	NULL	-	no_errors	
KIF2B	84643	genome.wustl.edu	37	17	51900989	51900989	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	51900989	51900989	G	C	SNP	KIF2B	NM_032559	human	genbank	57_37b	+1	validated	missense	c.595	p.D199H	0.705	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KRT33A	3883	genome.wustl.edu	37	17	39503181	39503181	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39503181	39503181	T	G	SNP	KRT33A	NM_004138	human	genbank	57_37b	-1	reviewed	missense	c.791	p.Q264P	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
MAGI1	9223	genome.wustl.edu	37	3	65361584	65361584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	65361584	65361584	C	T	SNP	MAGI1	NM_001033057	human	genbank	57_37b	-1	reviewed	missense	c.3032	p.R1011Q	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9000463	9000463	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9000463	9000463	C	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.40521	p.T13507	0.000	superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
NBPF12	440675	genome.wustl.edu	37	1	146400130	146400130	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146400130	146400130	C	A	SNP	NBPF12	ENST00000442909	human	ensembl	57_37b	+1	known	missense	c.606	p.D202E	0.000	HMMPfam_DUF1220	superfamily_GAT-like domain,HMMPfam_DUF1220	-	no_errors	
NELL2	4753	genome.wustl.edu	37	12	45269656	45269656	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	45269656	45269656	G	A	SNP	NELL2	NM_001145107	human	genbank	57_37b	-1	reviewed	silent	c.147	p.R49	0.483	NULL	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors	
NOP14	8602	genome.wustl.edu	37	4	2955267	2955267	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2955267	2955267	C	G	SNP	NOP14	NM_003703	human	genbank	57_37b	-1	validated	missense	c.718	p.E240Q	0.227	HMMPfam_Nop14	HMMPfam_Nop14	-	no_errors	
P2RY13	53829	genome.wustl.edu	37	3	151046371	151046371	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151046371	151046371	A	G	SNP	P2RY13	NM_176894	human	genbank	57_37b	-1	reviewed	missense	c.473	p.V158A	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDH19	57526	genome.wustl.edu	37	X	99661925	99661925	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	99661925	99661925	G	A	SNP	PCDH19	NM_001105243	human	genbank	57_37b	-1	validated	silent	c.1671	p.N557	0.999	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDE1C	5137	genome.wustl.edu	37	7	31815326	31815326	+	Missense_Mutation	SNP	C	T	T	rs74905175	byCluster;byFrequency;by1000genomes	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31815326	31815326	C	T	SNP	PDE1C	ENST00000396193	human	ensembl	57_37b	-1	known	missense	c.2092	p.G698S	0.366	NULL	HMMPfam_PDEase_I_N,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-		
RAB11FIP1	80223	genome.wustl.edu	37	8	37720512	37720512	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	37720512	37720512	C	T	SNP	RAB11FIP1	NM_001002814	human	genbank	57_37b	-1	validated	silent	c.3753	p.L1251	1.000	HMMPfam_RBD-FIP	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors	
SCGN	10590	genome.wustl.edu	37	6	25701484	25701484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25701484	25701484	G	A	SNP	SCGN	NM_006998	human	genbank	57_37b	+1	reviewed	missense	c.752	p.R251H	0.995	superfamily_EF-hand,HMMSmart_SM00054	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
SEMA3D	223117	genome.wustl.edu	37	7	84649620	84649620	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	84649620	84649620	T	A	SNP	SEMA3D	NM_152754	human	genbank	57_37b	-1	validated	nonsense	c.1432	p.K478*	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	-	no_errors	
SMCR7L	54471	genome.wustl.edu	37	22	39907907	39907907	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39907907	39907907	G	A	SNP	SMCR7L	NM_019008	human	genbank	57_37b	+1	validated	silent	c.198	p.S66	0.500	NULL	NULL	-	no_errors	
SPP1	6696	genome.wustl.edu	37	4	88901223	88901223	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88901223	88901223	T	C	SNP	SPP1	NM_001040058	human	genbank	57_37b	+1	validated	missense	c.119	p.V40A	0.004	HMMPfam_Osteopontin,HMMSmart_SM00017	HMMPfam_Osteopontin,HMMSmart_SM00017,PatternScan_OSTEOPONTIN	-	no_errors	
SSH1	54434	genome.wustl.edu	37	12	109185905	109185905	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109185905	109185905	G	A	SNP	SSH1	ENST00000326470	human	ensembl	57_37b	-1	known	nonsense	c.2083	p.Q695*	0.000	NULL	superfamily_SSF109715,HMMPfam_DEK_C,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
TNC	3371	genome.wustl.edu	37	9	117840365	117840365	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117840365	117840365	C	A	SNP	TNC	NM_002160	human	genbank	57_37b	-1	validated	missense	c.2531	p.G844V	0.718	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	
TOX	9760	genome.wustl.edu	37	8	59852038	59852038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	59852038	59852038	G	A	SNP	TOX	NM_014729	human	genbank	57_37b	-1	reviewed	silent	c.234	p.L78	0.995	NULL	PatternScan_HMG_BOX_1,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578509	7578509	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578509	7578509	A	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.421	p.C141R	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRHDE	29953	genome.wustl.edu	37	12	72667271	72667271	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72667271	72667271	A	T	SNP	TRHDE	NM_013381	human	genbank	57_37b	+1	reviewed	missense	c.713	p.N238I	1.000	superfamily_SSF63737,HMMPfam_Peptidase_M1	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
TRMT2A	27037	genome.wustl.edu	37	22	20103765	20103765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20103765	20103765	G	A	SNP	TRMT2A	NM_022727	human	genbank	57_37b	-1	validated	missense	c.395	p.A132V	0.947	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors	
TRPC5	7224	genome.wustl.edu	37	X	111155832	111155832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111155832	111155832	C	T	SNP	TRPC5	NM_012471	human	genbank	57_37b	-1	validated	missense	c.587	p.R196Q	0.997	superfamily_Ankyrin repeat,HMMPfam_TRP_2	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors	
TTC31	64427	genome.wustl.edu	37	2	74719773	74719773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74719773	74719773	C	T	SNP	TTC31	NM_022492	human	genbank	57_37b	+1	validated	missense	c.1162	p.R388C	0.923	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
VPS13C	54832	genome.wustl.edu	37	15	62146723	62146723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	62146723	62146723	G	A	SNP	VPS13C	NM_020821	human	genbank	57_37b	-1	validated	missense	c.11195	p.T3732M	0.008	NULL	HMMPfam_DUF1162	-	no_errors	
ZDHHC6	64429	genome.wustl.edu	37	10	114190585	114190585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	114190585	114190585	C	T	SNP	ZDHHC6	NM_022494	human	genbank	57_37b	-1	provisional	missense	c.1219	p.E407K	0.998	NULL	HMMPfam_zf-DHHC,HMMPfam_SH3_2	-	no_errors	
ZP4	57829	genome.wustl.edu	37	1	238048592	238048592	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A1HG-01A-11D-A135-09	TCGA-C8-A1HG-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	238048592	238048592	T	C	SNP	ZP4	NM_021186	human	genbank	57_37b	-1	reviewed	missense	c.1184	p.Y395C	0.991	HMMPfam_Zona_pellucida,HMMSmart_SM00241	superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors	
