Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABLIM3	22885	genome.wustl.edu	37	5	148590290	148590290	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	148590290	148590290	G	T	SNP	ABLIM3	NM_014945	human	genbank	57_37b	+1	validated	missense	c.577	p.D193Y	1.000	HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	-	no_errors	
ALPPL2	251	genome.wustl.edu	37	2	233274509	233274509	+	Missense_Mutation	SNP	C	C	G	rs1048995	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233274509	233274509	C	G	SNP	ALPPL2	NM_031313	human	genbank	57_37b	+1	reviewed	missense	c.1526	p.P509R	0.000	NULL	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	-		
ARMC6	93436	genome.wustl.edu	37	19	19162851	19162851	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19162851	19162851	C	G	SNP	ARMC6	NM_033415	human	genbank	57_37b	+1	reviewed	missense	c.625	p.H209D	0.000	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm	-	no_errors	
ATHL1	80162	genome.wustl.edu	37	11	289954	289954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	289954	289954	C	T	SNP	ATHL1	NM_025092	human	genbank	57_37b	+1	validated	silent	c.138	p.Y46	1.000	NULL	superfamily_Six-hairpin glycosidases,HMMPfam_Glyco_hydro_65m	-	no_errors	
ATXN2	6311	genome.wustl.edu	37	12	111951217	111951217	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	111951217	111951217	G	C	SNP	ATXN2	NM_002973	human	genbank	57_37b	-1	reviewed	missense	c.1982	p.P661R	0.998	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors	
CALD1	800	genome.wustl.edu	37	7	134613541	134613541	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134613541	134613541	G	A	SNP	CALD1	NM_033138	human	genbank	57_37b	+1	reviewed	silent	c.108	p.E36	1.000	HMMPfam_Caldesmon	HMMPfam_Caldesmon,PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
CEP250	11190	genome.wustl.edu	37	20	34091462	34091462	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34091462	34091462	G	A	SNP	CEP250	NM_007186	human	genbank	57_37b	+1	reviewed	silent	c.5265	p.L1755	0.997	NULL	superfamily_Prefoldin	-	no_errors	
CIC	23152	genome.wustl.edu	37	19	42799050	42799050	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42799050	42799050	C	T	SNP	CIC	NM_015125	human	genbank	57_37b	+1	validated	missense	c.4534	p.R1512C	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
COL4A6	1288	genome.wustl.edu	37	X	107412746	107412746	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107412746	107412746	T	C	SNP	COL4A6	NM_001847	human	genbank	57_37b	-1	reviewed	missense	c.3673	p.R1225G	0.027	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors	
EARS2	124454	genome.wustl.edu	37	16	23546599	23546599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23546599	23546599	G	A	SNP	EARS2	NM_001083614	human	genbank	57_37b	-1	provisional	missense	c.568	p.R190C	0.969	superfamily_SSF52374,HMMPfam_tRNA-synt_1c	superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNA-synt_bind	-	no_errors	
FGF23	8074	genome.wustl.edu	37	12	4479664	4479664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4479664	4479664	G	A	SNP	FGF23	NM_020638	human	genbank	57_37b	-1	reviewed	missense	c.601	p.P201S	0.005	NULL	PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	-	no_errors	
FMN1	342184	genome.wustl.edu	37	15	33359773	33359773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33359773	33359773	C	T	SNP	FMN1	NM_001103184	human	genbank	57_37b	-1	inferred	missense	c.313	p.E105K	0.014	NULL	superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115876	8115877	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115876	8115877	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1225_1226	p.P409fs	1.000:0.998	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115877	8115877	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115877	8115877	C	A	SNP	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	missense	c.1226	p.P409H	0.998	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
KCNJ3	3760	genome.wustl.edu	37	2	155711277	155711277	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	155711277	155711277	G	T	SNP	KCNJ3	NM_002239	human	genbank	57_37b	+1	reviewed	nonsense	c.958	p.E320*	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set	-	no_errors	
KIAA1632	57724	genome.wustl.edu	37	18	43503333	43503333	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43503333	43503333	T	C	SNP	KIAA1632	NM_020964	human	genbank	57_37b	-1	validated	silent	c.2739	p.Q913	0.575	NULL	NULL	-	no_errors	
KIDINS220	57498	genome.wustl.edu	37	2	8926362	8926362	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	8926362	8926362	C	A	SNP	KIDINS220	NM_020738	human	genbank	57_37b	-1	validated	missense	c.1913	p.R638L	1.000	HMMPfam_KAP_NTPase	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_KAP_NTPase,superfamily_SAM/Pointed domain	-	no_errors	
KIF14	9928	genome.wustl.edu	37	1	200587127	200587128	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200587127	200587128	CT	-	DEL	KIF14	NM_014875	human	genbank	57_37b	-1	validated	frame_shift_del	c.725_724	p.S242fs	0.002:0.080	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	(deletion:cds_exon[200586740,200587851])	no_errors	
KRT72	140807	genome.wustl.edu	37	12	52981585	52981585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52981585	52981585	G	A	SNP	KRT72	NM_080747	human	genbank	57_37b	-1	reviewed	silent	c.1140	p.C380	0.004	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LOC100287890	0	genome.wustl.edu	37	17	40267634	40267634	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40267634	40267634	G	C	SNP	LOC100287890	XM_002343559	human	genbank	57_37b	+1	model	splice_site	c.521+1	e3+1	0.000	-	-	-	no_errors	
LOC643677	643677	genome.wustl.edu	37	13	103391215	103391215	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103391215	103391215	T	C	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	silent	c.11619	p.S3873	0.003	NULL	NULL	-	no_errors	
LRRN3	54674	genome.wustl.edu	37	7	110763274	110763274	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	110763274	110763274	A	G	SNP	LRRN3	NM_001099658	human	genbank	57_37b	+1	validated	missense	c.446	p.H149R	1.000	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
LY75	4065	genome.wustl.edu	37	2	160690697	160690697	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160690697	160690697	T	C	SNP	LY75	NM_002349	human	genbank	57_37b	-1	validated	silent	c.3699	p.P1233	0.619	NULL	superfamily_Ricin B-like lectins,HMMSmart_SM00458,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
MATN4	8785	genome.wustl.edu	37	20	43926557	43926557	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43926557	43926557	C	T	SNP	MATN4	NM_003833	human	genbank	57_37b	-1	reviewed	splice_site	c.1579+1	e7+1	1.000	-	-	-	no_errors	
MND1	84057	genome.wustl.edu	37	4	154335914	154335914	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	154335914	154335914	G	T	SNP	MND1	NM_032117	human	genbank	57_37b	+1	validated	missense	c.523	p.A175S	1.000	HMMPfam_Mnd1	HMMPfam_Mnd1	-	no_errors	
MXRA5	25878	genome.wustl.edu	37	X	3238284	3238284	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3238284	3238284	A	T	SNP	MXRA5	NM_015419	human	genbank	57_37b	-1	validated	missense	c.5442	p.S1814R	0.000	NULL	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors	
PET112L	5188	genome.wustl.edu	37	4	152640617	152640617	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	152640617	152640617	G	T	SNP	PET112L	NM_004564	human	genbank	57_37b	-1	provisional	missense	c.401	p.S134Y	1.000	HMMPfam_GatB_N	HMMPfam_GatB_N,PatternScan_GATB,HMMPfam_GatB,superfamily_GatB/YqeY domain,HMMPfam_GatB_Yqey	-	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130827177	130827177	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130827177	130827177	G	A	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	missense	c.41	p.R14H	0.917	NULL	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
PLCG1	5335	genome.wustl.edu	37	20	39792360	39792360	+	Silent	SNP	C	C	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39792360	39792360	C	A	SNP	PLCG1	NM_002660	human	genbank	57_37b	+1	reviewed	silent	c.897	p.V299	1.000	superfamily_SSF47473	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
PREX2	80243	genome.wustl.edu	37	8	69000006	69000006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	69000006	69000006	G	A	SNP	PREX2	NM_024870	human	genbank	57_37b	+1	validated	missense	c.2075	p.R692Q	1.000	superfamily_PDZ domain-like,HMMSmart_SM00228	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PSMD6	9861	genome.wustl.edu	37	3	64004302	64004302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	64004302	64004302	G	A	SNP	PSMD6	NM_014814	human	genbank	57_37b	-1	provisional	missense	c.799	p.R267C	1.000	HMMPfam_PCI	"HMMPfam_RPN7,HMMPfam_PCI,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00088"	-	no_errors	
RIBC1	158787	genome.wustl.edu	37	X	53453289	53453289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53453289	53453289	G	A	SNP	RIBC1	NM_001031745	human	genbank	57_37b	+1	provisional	missense	c.65	p.R22Q	0.976	HMMPfam_RIB43A	HMMPfam_RIB43A	-	no_errors	
SCYL1	57410	genome.wustl.edu	37	11	65293726	65293726	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65293726	65293726	C	T	SNP	SCYL1	NM_020680	human	genbank	57_37b	+1	reviewed	silent	c.507	p.N169	0.839	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SEMA3F	6405	genome.wustl.edu	37	3	50225261	50225261	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50225261	50225261	C	T	SNP	SEMA3F	NM_004186	human	genbank	57_37b	+1	validated	nonsense	c.2071	p.R691*	0.961	superfamily_SSF48726,HMMSmart_IG	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
SERINC5	256987	genome.wustl.edu	37	5	79473765	79473765	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79473765	79473765	C	G	SNP	SERINC5	NM_178276	human	genbank	57_37b	-1	validated	missense	c.317	p.C106S	0.990	HMMPfam_Serinc	HMMPfam_Serinc,PatternScan_2FE2S_FER_1	-	no_errors	
SHROOM2	357	genome.wustl.edu	37	X	9914800	9914800	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9914800	9914800	C	T	SNP	SHROOM2	NM_001649	human	genbank	57_37b	+1	reviewed	silent	c.4674	p.I1558	0.480	HMMPfam_ASD2	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors	
SILV	6490	genome.wustl.edu	37	12	56349318	56349318	+	Silent	SNP	T	T	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56349318	56349318	T	A	SNP	SILV	NM_006928	human	genbank	57_37b	-1	validated	silent	c.1692	p.T564	0.973	NULL	superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089	-	no_errors	
SMC1A	8243	genome.wustl.edu	37	X	53432455	53432455	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53432455	53432455	G	A	SNP	SMC1A	NM_006306	human	genbank	57_37b	-1	reviewed	silent	c.1881	p.R627	0.998	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors	
TBX3	6926	genome.wustl.edu	37	12	115120697	115120698	+	Frame_Shift_Ins	INS	-	-	GACC	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115120697	115120698	-	GACC	INS	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.309_308	p.K104fs	0.967:1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TMEM200A	114801	genome.wustl.edu	37	6	130762622	130762622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	130762622	130762622	G	A	SNP	TMEM200A	NM_052913	human	genbank	57_37b	+1	provisional	missense	c.1055	p.G352E	0.933	NULL	HMMPfam_DUF2371	-	no_errors	
TNIK	23043	genome.wustl.edu	37	3	170846562	170846562	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170846562	170846562	T	G	SNP	TNIK	NM_015028	human	genbank	57_37b	-1	validated	missense	c.1714	p.S572R	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
TSC1	7248	genome.wustl.edu	37	9	135772688	135772688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135772688	135772688	C	T	SNP	TSC1	NM_000368	human	genbank	57_37b	-1	reviewed	missense	c.2858	p.R953K	1.000	NULL	HMMPfam_Hamartin	-	no_errors	
TSC22D3	1831	genome.wustl.edu	37	X	106957953	106957953	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106957953	106957953	A	G	SNP	TSC22D3	NM_198057	human	genbank	57_37b	-1	reviewed	silent	c.399	p.Y133	1.000	PatternScan_TSC22,HMMPfam_TSC22	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors	
UCP3	7352	genome.wustl.edu	37	11	73714978	73714978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73714978	73714978	C	T	SNP	UCP3	NM_003356	human	genbank	57_37b	-1	reviewed	missense	c.718	p.V240M	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors	
VWF	7450	genome.wustl.edu	37	12	6230460	6230460	+	Nonsense_Mutation	SNP	G	G	A	rs61753984	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6230460	6230460	G	A	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	nonsense	c.100	p.R34*	0.642	HMMSmart_SM00216	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-		
WDR72	256764	genome.wustl.edu	37	15	53889357	53889358	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	53889357	53889358	CA	-	DEL	WDR72	NM_182758	human	genbank	57_37b	-1	validated	frame_shift_del	c.3067_3066	p.C1022fs	0.055:0.003	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[53889276,53889471])	no_errors	
XCR1	2829	genome.wustl.edu	37	3	46062898	46062898	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46062898	46062898	G	A	SNP	XCR1	NM_001024644	human	genbank	57_37b	-1	reviewed	missense	c.542	p.T181M	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ZFP36L1	677	genome.wustl.edu	37	14	69256807	69256807	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69256807	69256807	T	A	SNP	ZFP36L1	NM_004926	human	genbank	57_37b	-1	reviewed	nonsense	c.460	p.K154*	1.000	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	HMMPfam_Tis11B_N,superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	-	no_errors	
ZNF385C	201181	genome.wustl.edu	37	17	40179106	40179106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40179106	40179106	G	A	SNP	ZNF385C	XM_002343558	human	genbank	57_37b	-1	model	missense	c.3058	p.R1020C	1.000	NULL	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
ZNF658	26149	genome.wustl.edu	37	9	40773232	40773232	+	Silent	SNP	T	T	G	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40773232	40773232	T	G	SNP	ZNF658	NM_033160	human	genbank	57_37b	-1	validated	silent	c.2043	p.T681	0.091	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF700	90592	genome.wustl.edu	37	19	12059318	12059318	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12059318	12059318	G	T	SNP	ZNF700	NM_144566	human	genbank	57_37b	+1	provisional	missense	c.479	p.G160V	0.004	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSWIM6	57688	genome.wustl.edu	37	5	60839535	60839535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A1HN-01A-11D-A135-09	TCGA-C8-A1HN-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	60839535	60839535	G	A	SNP	ZSWIM6	NM_020928	human	genbank	57_37b	+1	provisional	silent	c.3039	p.A1013	0.313	NULL	HMMPfam_SWIM	-	no_errors	
