Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACSL4	2182	genome.wustl.edu	37	X	108926449	108926449	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	108926449	108926449	C	T	SNP	ACSL4	NM_022977	human	genbank	57_37b	-1	reviewed	silent	c.267	p.K89	1.000	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
ADAMTSL1	92949	genome.wustl.edu	37	9	18574047	18574047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18574047	18574047	G	A	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	missense	c.257	p.G86D	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-	no_errors	
ADAT2	134637	genome.wustl.edu	37	6	143759817	143759817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	143759817	143759817	G	A	SNP	ADAT2	NM_182503	human	genbank	57_37b	-1	validated	silent	c.111	p.L37	0.483	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine deaminase-like	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine deaminase-like,PatternScan_CYT_DCMP_DEAMINASES	-	no_errors	
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-		
CDH1	999	genome.wustl.edu	37	16	68845762	68845762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68845762	68845762	G	A	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	silent	c.1008	p.E336	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CHD2	1106	genome.wustl.edu	37	15	93527570	93527570	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	93527570	93527570	T	G	SNP	CHD2	NM_001271	human	genbank	57_37b	+1	reviewed	missense	c.3077	p.F1026C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Chromo domain-like,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors	
CLUL1	27098	genome.wustl.edu	37	18	645027	645027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	645027	645027	G	A	SNP	CLUL1	NM_014410	human	genbank	57_37b	+1	validated	missense	c.1327	p.E443K	0.218	HMMPfam_Clusterin,HMMSmart_CLa	HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa	-	no_errors	
DDX46	9879	genome.wustl.edu	37	5	134147500	134147500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	134147500	134147500	C	A	SNP	DDX46	NM_014829	human	genbank	57_37b	+1	reviewed	missense	c.2401	p.L801I	0.996	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
ENC1	8507	genome.wustl.edu	37	5	73931474	73931474	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	73931474	73931474	A	T	SNP	ENC1	NM_003633	human	genbank	57_37b	-1	validated	missense	c.837	p.N279K	0.950	superfamily_Galactose oxidase central domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors	
ENSG00000228443	0	genome.wustl.edu	37	16	953592	953592	+	Silent	SNP	G	G	A	rs28709218	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	953592	953592	G	A	SNP	ENSG00000228443	ENST00000444707	human	ensembl	57_37b	-1	known	silent	c.474	p.T158	0.964	NULL	NULL	-		
FAT4	79633	genome.wustl.edu	37	4	126372689	126372689	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126372689	126372689	C	T	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	silent	c.10518	p.N3506	0.712	superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
GALNT11	63917	genome.wustl.edu	37	7	151810410	151810410	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151810410	151810410	G	C	SNP	GALNT11	NM_022087	human	genbank	57_37b	+1	validated	missense	c.1160	p.G387A	0.986	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,HMMSmart_SM00458,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin	-	no_errors	
GLIPR1	11010	genome.wustl.edu	37	12	75892695	75892695	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	75892695	75892695	A	G	SNP	GLIPR1	NM_006851	human	genbank	57_37b	+1	reviewed	missense	c.738	p.I246M	0.002	NULL	superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2	-	no_errors	
GPRASP2	114928	genome.wustl.edu	37	X	101971061	101971061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101971061	101971061	G	A	SNP	GPRASP2	NM_001004051	human	genbank	57_37b	+1	validated	missense	c.1264	p.A422T	0.033	NULL	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors	
HMGCS1	3157	genome.wustl.edu	37	5	43295926	43295926	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43295926	43295926	A	G	SNP	HMGCS1	NM_001098272	human	genbank	57_37b	-1	validated	missense	c.833	p.M278T	1.000	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like,PatternScan_HMG_COA_SYNTHASE,HMMPfam_HMG_CoA_synt_C	-	no_errors	
INCENP	3619	genome.wustl.edu	37	11	61897359	61897359	+	Silent	SNP	C	C	T	rs1675133	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61897359	61897359	C	T	SNP	INCENP	NM_001040694	human	genbank	57_37b	+1	validated	silent	c.360	p.V120	0.044	NULL	HMMPfam_INCENP_ARK-bind	-		
KIAA0240	23506	genome.wustl.edu	37	6	42797341	42797342	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42797341	42797342	-	T	INS	KIAA0240	NM_015349	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1270_1271	p.L425fs	1.000:1.000	NULL	NULL	-	no_errors	
KIAA1712	80817	genome.wustl.edu	37	4	175224934	175224934	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	175224934	175224934	C	T	SNP	KIAA1712	NM_001145314	human	genbank	57_37b	+1	validated	silent	c.318	p.I106	0.981	NULL	NULL	-	no_errors	
KIF14	9928	genome.wustl.edu	37	1	200567540	200567540	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200567540	200567540	T	A	SNP	KIF14	NM_014875	human	genbank	57_37b	-1	validated	missense	c.2374	p.I792F	0.995	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors	
LOC100287830	0	genome.wustl.edu	37	17	40120771	40120771	+	Missense_Mutation	SNP	T	T	G	rs8078650	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40120771	40120771	T	G	SNP	LOC100287830	XM_002343557	human	genbank	57_37b	-1	model	missense	c.266	p.N89T	0.000	NULL	NULL	-		
LOC100288309	0	genome.wustl.edu	37	22	19164060	19164070	+	Frame_Shift_Del	DEL	CCCCTTCCCCT	CCCCTTCCCCT	-	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	CCCCTTCCCCT	CCCCTTCCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19164060	19164070	CCCCTTCCCCT	-	DEL	LOC100288309	XM_002344193	human	genbank	57_37b	+1	model	frame_shift_del	c.451_461	p.L154fs	0.000:0.000:0.000:0.000:0.000:0.000:0.004:0.001:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[19163942,19164107])	no_errors	
LOC348021	348021	genome.wustl.edu	37	13	19585867	19585867	+	RNA	SNP	T	T	C	rs4769320	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19585867	19585867	T	C	SNP	LOC348021	NR_026852	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.004	-	-	-		
LOC442132	442132	genome.wustl.edu	37	5	7300058	7300058	+	RNA	SNP	A	A	G	rs34972790	byCluster;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7300058	7300058	A	G	SNP	LOC442132	XR_040018	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.015	-	-	-		
LOC654780	654780	genome.wustl.edu	37	16	84230677	84230677	+	RNA	SNP	G	G	A	rs111536022	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84230677	84230677	G	A	SNP	LOC654780	XR_040612	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
LOC729900	729900	genome.wustl.edu	37	15	23096921	23096921	+	RNA	SNP	A	C	C	rs4778307	byCluster;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23096921	23096921	A	C	SNP	LOC729900	XR_037628	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.001	-	-	-		
MAPK8IP3	23162	genome.wustl.edu	37	16	1812950	1812950	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1812950	1812950	A	G	SNP	MAPK8IP3	NM_015133	human	genbank	57_37b	+1	reviewed	missense	c.1838	p.N613S	1.000	NULL	HMMPfam_Jnk-SapK_ap_N,superfamily_WD40 repeat-like	-	no_errors	
MSL2	55167	genome.wustl.edu	37	3	135871094	135871094	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	135871094	135871094	G	-	DEL	MSL2	NM_018133	human	genbank	57_37b	-1	validated	frame_shift_del	c.629	p.P210fs	1.000	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850	(deletion:cds_exon[135869989,135871580])	no_errors	
PAIP2	51247	genome.wustl.edu	37	5	138699536	138699536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138699536	138699536	C	T	SNP	PAIP2	NM_001033112	human	genbank	57_37b	+1	validated	silent	c.63	p.N21	0.996	NULL	HMMPfam_PAM2	-	no_errors	
PCDHB6	56130	genome.wustl.edu	37	5	140531214	140531214	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140531214	140531214	G	A	SNP	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	missense	c.1376	p.R459H	0.000	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130833916	130833916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130833916	130833916	G	A	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	silent	c.867	p.Q289	0.201	superfamily_PAZ domain,HMMPfam_PAZ	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
PLUNC	51297	genome.wustl.edu	37	20	31825550	31825550	+	Silent	SNP	C	C	T	rs6120177	byCluster;byFrequency;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31825550	31825550	C	T	SNP	PLUNC	NM_016583	human	genbank	57_37b	+1	reviewed	silent	c.33	p.Y11	0.427	NULL	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI	-		
RALGAPB	57148	genome.wustl.edu	37	20	37186945	37186948	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	CAAA	CAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	37186945	37186948	CAAA	-	DEL	RALGAPB	NM_020336	human	genbank	57_37b	+1	validated	frame_shift_del	c.3380_3383	p.A1127fs	1.000:1.000:1.000:1.000	superfamily_Rap/Ran-GAP (Pfam 02145)	superfamily_Rap/Ran-GAP (Pfam 02145)	(deletion:cds_exon[37186938,37187096])	no_errors	
RELN	5649	genome.wustl.edu	37	7	103179598	103179598	+	Silent	SNP	G	G	A	rs114339919	by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103179598	103179598	G	A	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	silent	c.7107	p.D2369	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-		
RERE	473	genome.wustl.edu	37	1	8422899	8422899	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8422899	8422899	C	T	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	silent	c.1746	p.S582	0.998	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	no_errors	
RPGR	6103	genome.wustl.edu	37	X	38182684	38182684	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38182684	38182684	G	A	SNP	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	missense	c.122	p.S41L	1.000	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	-	no_errors	
RPL23AP32	56969	genome.wustl.edu	37	2	54756740	54756740	+	RNA	SNP	C	C	T	rs1802889	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	54756740	54756740	C	T	SNP	RPL23AP32	NR_002229	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	1.000	-	-	-		
SLC9A4	389015	genome.wustl.edu	37	2	103120013	103120013	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103120013	103120013	G	T	SNP	SLC9A4	NM_001011552	human	genbank	57_37b	+1	validated	missense	c.827	p.G276V	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	
TADA1	117143	genome.wustl.edu	37	1	166839061	166839061	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	166839061	166839061	C	T	SNP	TADA1	NM_053053	human	genbank	57_37b	-1	validated	silent	c.105	p.K35	1.000	NULL	NULL	-	no_errors	
TBC1D3B	414059	genome.wustl.edu	37	17	34497337	34497337	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34497337	34497337	G	A	SNP	TBC1D3B	NM_001001417	human	genbank	57_37b	-1	reviewed	silent	c.579	p.I193	1.000	superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	-	no_errors	
WNK3	65267	genome.wustl.edu	37	X	54337552	54337552	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54337552	54337552	G	A	SNP	WNK3	NM_020922	human	genbank	57_37b	-1	validated	missense	c.710	p.T237M	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ZDHHC15	158866	genome.wustl.edu	37	X	74637024	74637024	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	74637024	74637024	G	T	SNP	ZDHHC15	NM_144969	human	genbank	57_37b	-1	reviewed	missense	c.865	p.P289T	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors	
ZHX1	11244	genome.wustl.edu	37	8	124265786	124265786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A107-01A-11D-A10M-09	TCGA-E2-A107-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124265786	124265786	C	T	SNP	ZHX1	NM_001017926	human	genbank	57_37b	-1	reviewed	missense	c.2401	p.D801N	1.000	superfamily_Homeodomain_like,HMMSmart_HOX	PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_Homeobox	-	no_errors	
