Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC5	10057	genome.wustl.edu	37	3	183669317	183669317	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183669317	183669317	G	C	SNP	ABCC5	NM_005688	human	genbank	57_37b	-1	reviewed	missense	c.2856	p.F952L	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC9	10060	genome.wustl.edu	37	12	22025600	22025600	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22025600	22025600	G	A	SNP	ABCC9	NM_005691	human	genbank	57_37b	-1	reviewed	silent	c.2157	p.L719	0.074	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACTL6B	51412	genome.wustl.edu	37	7	100244881	100244881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100244881	100244881	G	A	SNP	ACTL6B	NM_016188	human	genbank	57_37b	-1	reviewed	silent	c.786	p.S262	0.590	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN,PatternScan_ACTINS_2	-	no_errors	
ADAMTS13	11093	genome.wustl.edu	37	9	136314932	136314932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136314932	136314932	G	A	SNP	ADAMTS13	NM_139025	human	genbank	57_37b	+1	reviewed	missense	c.2890	p.V964M	0.342	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Spermadhesin CUB domain"	-	no_errors	
AMAC1	146861	genome.wustl.edu	37	17	33520478	33520478	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33520478	33520478	G	A	SNP	AMAC1	NM_152462	human	genbank	57_37b	-1	validated	silent	c.849	p.C283	1.000	superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
ANO2	57101	genome.wustl.edu	37	12	5848498	5848498	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5848498	5848498	G	T	SNP	ANO2	NM_020373	human	genbank	57_37b	-1	validated	silent	c.1407	p.G469	0.295	NULL	HMMPfam_DUF590	-	no_errors	
ARHGEF2	9181	genome.wustl.edu	37	1	155922540	155922540	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155922540	155922540	G	A	SNP	ARHGEF2	NM_004723	human	genbank	57_37b	-1	validated	silent	c.1779	p.F593	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
AZGP1P1	646282	genome.wustl.edu	37	7	99580920	99580920	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99580920	99580920	C	T	SNP	AZGP1P1	ENST00000398087	human	ensembl	57_37b	+1	known	missense	c.221	p.A74V	0.002	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
BBS9	27241	genome.wustl.edu	37	7	33407456	33407456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	33407456	33407456	C	T	SNP	BBS9	NM_198428	human	genbank	57_37b	+1	reviewed	missense	c.1771	p.L591F	1.000	NULL	NULL	-	no_errors	
BRIP1	83990	genome.wustl.edu	37	17	59861632	59861640	+	In_Frame_Del	DEL	TGCTATTTT	TGCTATTTT	-	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	TGCTATTTT	TGCTATTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	59861632	59861640	TGCTATTTT	-	DEL	BRIP1	NM_032043	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1627_1619	p.QNS540in_frame_del	1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMSmart_SM00487,HMMPfam_DEAD_2,HMMSmart_SM00491	(deletion:cds_exon[59861631,59861785])	no_errors	
BRSK1	84446	genome.wustl.edu	37	19	55820015	55820015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55820015	55820015	C	T	SNP	BRSK1	NM_032430	human	genbank	57_37b	+1	validated	missense	c.2098	p.R700C	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
C12orf44	60673	genome.wustl.edu	37	12	52470890	52470890	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52470890	52470890	G	T	SNP	C12orf44	NM_001098673	human	genbank	57_37b	+1	validated	missense	c.573	p.K191N	1.000	NULL	HMMPfam_DUF1649	-	no_errors	
C1orf58	148362	genome.wustl.edu	37	1	222903003	222903003	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	222903003	222903003	A	T	SNP	C1orf58	NM_144695	human	genbank	57_37b	+1	validated	missense	c.798	p.K266N	0.979	HMMPfam_BRO1	HMMPfam_BRO1	-	no_errors	
C5orf45	51149	genome.wustl.edu	37	5	179267940	179267940	+	Missense_Mutation	SNP	C	C	T	rs112467347	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179267940	179267940	C	T	SNP	C5orf45	NM_016175	human	genbank	57_37b	-1	validated	missense	c.469	p.V157I	0.002	NULL	NULL	-		
C8orf31	286122	genome.wustl.edu	37	8	144126187	144126187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144126187	144126187	G	A	SNP	C8orf31	NM_173687	human	genbank	57_37b	+1	predicted	missense	c.308	p.R103H	0.000	NULL	NULL	-	no_errors	
C9orf144B	0	genome.wustl.edu	37	9	34723403	34723403	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34723403	34723403	A	G	SNP	C9orf144B	NM_001141917	human	genbank	57_37b	-1	validated	silent	c.3834	p.R1278	0.000	NULL	NULL	-	no_errors	
CD300E	342510	genome.wustl.edu	37	17	72613390	72613390	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72613390	72613390	G	A	SNP	CD300E	NM_181449	human	genbank	57_37b	-1	provisional	silent	c.255	p.L85	0.001	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
CDH4	1002	genome.wustl.edu	37	20	59829897	59829897	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	59829897	59829897	C	G	SNP	CDH4	NM_001794	human	genbank	57_37b	+1	reviewed	missense	c.73	p.L25V	1.000	superfamily_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CENPB	1059	genome.wustl.edu	37	20	3765588	3765588	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3765588	3765588	C	T	SNP	CENPB	NM_001810	human	genbank	57_37b	-1	reviewed	missense	c.1543	p.E515K	1.000	HMMPfam_Cenp-B_dimeris	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE,HMMPfam_Cenp-B_dimeris,superfamily_SSF101160	-	no_errors	
DBX2	440097	genome.wustl.edu	37	12	45444337	45444337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	45444337	45444337	C	T	SNP	DBX2	NM_001004329	human	genbank	57_37b	-1	validated	missense	c.374	p.R125Q	0.829	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
DDRGK1	65992	genome.wustl.edu	37	20	3184039	3184039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3184039	3184039	C	T	SNP	DDRGK1	NM_023935	human	genbank	57_37b	-1	provisional	missense	c.115	p.E39K	0.610	NULL	HMMPfam_DDRGK	-	no_errors	
DUSP22	56940	genome.wustl.edu	37	6	348862	348862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	348862	348862	C	T	SNP	DUSP22	ENST00000457386	human	ensembl	57_37b	+1	known	missense	c.529	p.R177C	0.557	NULL	superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	-	no_errors	
EEFSEC	60678	genome.wustl.edu	37	3	127983621	127983621	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	127983621	127983621	C	A	SNP	EEFSEC	NM_021937	human	genbank	57_37b	+1	validated	silent	c.783	p.L261	1.000	superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2	-	no_errors	
EHMT1	79813	genome.wustl.edu	37	9	140729293	140729293	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140729293	140729293	A	G	SNP	EHMT1	ENST00000460843	human	ensembl	57_37b	+1	known	missense	c.3785	p.K1262R	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317	-	no_errors	
EIF2B5	8893	genome.wustl.edu	37	3	183855975	183855975	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183855975	183855975	G	A	SNP	EIF2B5	NM_003907	human	genbank	57_37b	+1	reviewed	missense	c.706	p.D236N	0.995	superfamily_SSF53448	superfamily_SSF53448,superfamily_Trimer_LpxA_like,HMMPfam_Hexapep,superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2	-	no_errors	
ELFN2	114794	genome.wustl.edu	37	22	37771355	37771355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37771355	37771355	A	G	SNP	ELFN2	NM_052906	human	genbank	57_37b	-1	validated	missense	c.220	p.S74P	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_FN3	-	no_errors	
ENSG00000246680	0	genome.wustl.edu	37	3	156866916	156866916	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	156866916	156866916	G	T	SNP	ENSG00000246680	ENST00000501565	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ERCC3	2071	genome.wustl.edu	37	2	128046289	128046289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128046289	128046289	C	T	SNP	ERCC3	NM_000122	human	genbank	57_37b	-1	reviewed	missense	c.974	p.R325Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_ResIII	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_ResIII,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
FAM124B	79843	genome.wustl.edu	37	2	225266233	225266233	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	225266233	225266233	C	T	SNP	FAM124B	NM_001122779	human	genbank	57_37b	-1	validated	missense	c.253	p.V85I	0.002	NULL	NULL	-	no_errors	
FAM38B	63895	genome.wustl.edu	37	18	10696087	10696087	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	10696087	10696087	G	A	SNP	FAM38B	ENST00000285141	human	ensembl	57_37b	-1	known	missense	c.401	p.P134L	1.000	NULL	NULL	-	no_errors	
FAM47C	442444	genome.wustl.edu	37	X	37028635	37028635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	37028635	37028635	C	T	SNP	FAM47C	NM_001013736	human	genbank	57_37b	+1	provisional	missense	c.2152	p.P718S	0.004	NULL	NULL	-	no_errors	
GLI3	2737	genome.wustl.edu	37	7	42064883	42064883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	42064883	42064883	G	A	SNP	GLI3	NM_000168	human	genbank	57_37b	-1	reviewed	missense	c.1336	p.P446S	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
HFM1	164045	genome.wustl.edu	37	1	91859834	91859834	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	91859834	91859834	G	C	SNP	HFM1	NM_001017975	human	genbank	57_37b	-1	validated	missense	c.310	p.L104V	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_Sec63	-	no_errors	
HNRNPH2	3188	genome.wustl.edu	37	X	100668219	100668219	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100668219	100668219	C	A	SNP	HNRNPH2	NM_001032393	human	genbank	57_37b	+1	reviewed	missense	c.1243	p.Q415K	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors	
HNRNPL	3191	genome.wustl.edu	37	19	39329199	39329199	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39329199	39329199	G	T	SNP	HNRNPL	NM_001533	human	genbank	57_37b	-1	reviewed	nonsense	c.1395	p.Y465*	0.938	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
HP1BP3	50809	genome.wustl.edu	37	1	21076220	21076220	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21076220	21076220	A	G	SNP	HP1BP3	NM_016287	human	genbank	57_37b	-1	validated	silent	c.1137	p.Y379	0.974	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	-	no_errors	
HSPG2	3339	genome.wustl.edu	37	1	22156504	22156504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22156504	22156504	C	A	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	missense	c.11752	p.G3918W	0.994	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors	
IFT122	55764	genome.wustl.edu	37	3	129200411	129200411	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129200411	129200411	C	G	SNP	IFT122	ENST00000454840	human	ensembl	57_37b	+1	known	missense	c.919	p.P307A	1.000	NULL	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
IKBKE	9641	genome.wustl.edu	37	1	206649567	206649567	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206649567	206649567	C	T	SNP	IKBKE	NM_014002	human	genbank	57_37b	+1	validated	silent	c.402	p.R134	0.004	HMMPfam_Pkinase,superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
IWS1	55677	genome.wustl.edu	37	2	128260411	128260411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128260411	128260411	C	T	SNP	IWS1	NM_017969	human	genbank	57_37b	-1	validated	missense	c.1447	p.E483K	1.000	NULL	HMMPfam_IWS1_C	-	no_errors	
IYD	389434	genome.wustl.edu	37	6	150715289	150715289	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150715289	150715289	C	T	SNP	IYD	NM_203395	human	genbank	57_37b	+1	reviewed	silent	c.585	p.F195	1.000	superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase	superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase	-	no_errors	
JAKMIP3	282973	genome.wustl.edu	37	10	133967268	133967268	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	133967268	133967268	C	T	SNP	JAKMIP3	NM_001105521	human	genbank	57_37b	+1	provisional	silent	c.2073	p.L691	0.736	NULL	NULL	-	no_errors	
KCNS3	3790	genome.wustl.edu	37	2	18112646	18112646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	18112646	18112646	G	A	SNP	KCNS3	NM_002252	human	genbank	57_37b	+1	reviewed	missense	c.371	p.R124H	1.000	superfamily_BTB/POZ_fold,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors	
KIAA1328	57536	genome.wustl.edu	37	18	34465536	34465536	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34465536	34465536	G	A	SNP	KIAA1328	NM_020776	human	genbank	57_37b	+1	validated	missense	c.349	p.E117K	1.000	NULL	NULL	-	no_errors	
KMO	8564	genome.wustl.edu	37	1	241750005	241750005	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	241750005	241750005	G	C	SNP	KMO	NM_003679	human	genbank	57_37b	+1	validated	missense	c.982	p.D328H	1.000	superfamily_FAD/NAD(P)-binding domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO	-	no_errors	
LOC100288105	0	genome.wustl.edu	37	5	140242934	140242934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140242934	140242934	G	A	SNP	LOC100288105	XM_002342568	human	genbank	57_37b	-1	model	silent	c.42	p.V14	0.001	NULL	NULL	-	no_errors	
LOC643677	643677	genome.wustl.edu	37	13	103391205	103391205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103391205	103391205	C	T	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	missense	c.11629	p.E3877K	0.000	NULL	NULL	-	no_errors	
LRP2	4036	genome.wustl.edu	37	2	170003332	170003332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170003332	170003332	C	T	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.12728	p.R4243Q	1.000	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors	
LTA	4049	genome.wustl.edu	37	6	31541102	31541102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31541102	31541102	G	A	SNP	LTA	NM_000595	human	genbank	57_37b	+1	reviewed	missense	c.250	p.D84N	0.176	superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF	superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1	-	no_errors	
MAS1L	116511	genome.wustl.edu	37	6	29454744	29454744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29454744	29454744	G	A	SNP	MAS1L	NM_052967	human	genbank	57_37b	-1	provisional	silent	c.936	p.I312	0.748	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MAS1L	116511	genome.wustl.edu	37	6	29455332	29455332	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29455332	29455332	G	A	SNP	MAS1L	NM_052967	human	genbank	57_37b	-1	provisional	silent	c.348	p.V116	0.002	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	
MBOAT4	619373	genome.wustl.edu	37	8	29989859	29989859	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	29989859	29989859	G	C	SNP	MBOAT4	NM_001100916	human	genbank	57_37b	-1	validated	nonsense	c.908	p.S303*	0.124	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors	
MCM7	4176	genome.wustl.edu	37	7	99695338	99695338	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99695338	99695338	G	T	SNP	MCM7	NM_005916	human	genbank	57_37b	-1	reviewed	nonsense	c.1016	p.S339*	1.000	HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_MCM_1	-	no_errors	
MFAP3L	9848	genome.wustl.edu	37	4	170912621	170912621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	170912621	170912621	C	T	SNP	MFAP3L	NM_021647	human	genbank	57_37b	-1	validated	missense	c.1138	p.D380N	0.046	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
MRGPRD	116512	genome.wustl.edu	37	11	68748273	68748273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68748273	68748273	G	A	SNP	MRGPRD	NM_198923	human	genbank	57_37b	-1	validated	silent	c.183	p.F61	0.582	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
MUC12	10071	genome.wustl.edu	37	7	100647880	100647880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100647880	100647880	G	A	SNP	MUC12	ENST00000379442	human	ensembl	57_37b	+1	known	missense	c.14465	p.R4822H	0.001	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
NMUR1	10316	genome.wustl.edu	37	2	232392911	232392911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232392911	232392911	G	A	SNP	NMUR1	NM_006056	human	genbank	57_37b	-1	validated	missense	c.821	p.S274F	0.007	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NPSR1	387129	genome.wustl.edu	37	7	34724283	34724283	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	34724283	34724283	G	T	SNP	NPSR1	NM_207173	human	genbank	57_37b	+1	reviewed	missense	c.267	p.Q89H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4K2	390431	genome.wustl.edu	37	14	20344474	20344474	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20344474	20344474	G	T	SNP	OR4K2	NM_001005501	human	genbank	57_37b	+1	provisional	silent	c.48	p.G16	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR8J1	219477	genome.wustl.edu	37	11	56127893	56127893	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56127893	56127893	C	A	SNP	OR8J1	NM_001005205	human	genbank	57_37b	+1	provisional	silent	c.171	p.T57	0.525	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OXER1	165140	genome.wustl.edu	37	2	42990664	42990664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42990664	42990664	C	T	SNP	OXER1	NM_148962	human	genbank	57_37b	-1	validated	missense	c.656	p.G219D	0.006	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PABPC1L	80336	genome.wustl.edu	37	20	43538932	43538932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43538932	43538932	C	T	SNP	PABPC1L	NM_001124756	human	genbank	57_37b	+1	provisional	missense	c.148	p.R50C	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA	-	no_errors	
PCDHGA2	56113	genome.wustl.edu	37	5	140720243	140720243	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140720243	140720243	A	G	SNP	PCDHGA2	NM_018915	human	genbank	57_37b	+1	reviewed	missense	c.1705	p.T569A	0.999	superfamily_Cadherin-like	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIAS2	9063	genome.wustl.edu	37	18	44400931	44400931	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44400931	44400931	T	C	SNP	PIAS2	NM_004671	human	genbank	57_37b	-1	validated	missense	c.1613	p.H538R	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors	
PLXNA4	91584	genome.wustl.edu	37	7	131982906	131982906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	131982906	131982906	G	A	SNP	PLXNA4	NM_020911	human	genbank	57_37b	-1	validated	missense	c.1447	p.R483W	0.989	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors	
POTEF	728378	genome.wustl.edu	37	2	130868152	130868155	+	Frame_Shift_Del	DEL	GTCT	GTCT	-	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	GTCT	GTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	130868152	130868155	GTCT	-	DEL	POTEF	NM_001099771	human	genbank	57_37b	-1	validated	frame_shift_del	c.1019_1016	p.Q339fs	0.018:0.018:0.015:0.007	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	(deletion:cds_exon[130868116,130868253])	no_errors	
PRMT5	10419	genome.wustl.edu	37	14	23397820	23397820	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23397820	23397820	C	G	SNP	PRMT5	NM_006109	human	genbank	57_37b	-1	validated	missense	c.115	p.D39H	1.000	NULL	HMMPfam_PRMT5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
PTPRM	5797	genome.wustl.edu	37	18	8387170	8387170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8387170	8387170	G	A	SNP	PTPRM	NM_001105244	human	genbank	57_37b	+1	reviewed	missense	c.4145	p.R1382H	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RNF103	7844	genome.wustl.edu	37	2	86831287	86831287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86831287	86831287	G	A	SNP	RNF103	NM_005667	human	genbank	57_37b	-1	reviewed	silent	c.1737	p.A579	0.997	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
RNF170	81790	genome.wustl.edu	37	8	42711536	42711536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42711536	42711536	C	T	SNP	RNF170	NM_030954	human	genbank	57_37b	-1	validated	silent	c.543	p.L181	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_DUF1232	-	no_errors	
SLC5A9	200010	genome.wustl.edu	37	1	48696327	48696327	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	48696327	48696327	A	G	SNP	SLC5A9	NM_001135181	human	genbank	57_37b	+1	validated	missense	c.635	p.Y212C	1.000	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors	
SMPD3	55512	genome.wustl.edu	37	16	68404767	68404767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68404767	68404767	G	T	SNP	SMPD3	NM_018667	human	genbank	57_37b	-1	validated	missense	c.1318	p.L440I	1.000	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	no_errors	
SPAG5	10615	genome.wustl.edu	37	17	26905084	26905084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26905084	26905084	G	A	SNP	SPAG5	NM_006461	human	genbank	57_37b	-1	reviewed	missense	c.3454	p.R1152W	1.000	NULL	NULL	-	no_errors	
SS18L1	26039	genome.wustl.edu	37	20	60738566	60738566	+	Silent	SNP	C	T	T	rs73309164	byCluster;by1000genomes	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60738566	60738566	C	T	SNP	SS18L1	NM_198935	human	genbank	57_37b	+1	validated	silent	c.609	p.G203	0.885	NULL	HMMPfam_SSXT	-		
STIL	6491	genome.wustl.edu	37	1	47728698	47728698	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	47728698	47728698	C	T	SNP	STIL	NM_001048166	human	genbank	57_37b	-1	reviewed	silent	c.2706	p.Q902	0.220	NULL	NULL	-	no_errors	
TBC1D9	23158	genome.wustl.edu	37	4	141578724	141578724	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	141578724	141578724	A	G	SNP	TBC1D9	NM_015130	human	genbank	57_37b	-1	validated	silent	c.2164	p.L722	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand	-	no_errors	
TMOD4	29765	genome.wustl.edu	37	1	151146968	151146968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151146968	151146968	G	A	SNP	TMOD4	NM_013353	human	genbank	57_37b	-1	validated	missense	c.179	p.T60M	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_RNI-like	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578461	7578461	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.469	p.V157F	0.032	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179456809	179456809	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179456809	179456809	A	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.52112	p.L17371R	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179476280	179476280	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179476280	179476280	A	G	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	silent	c.42972	p.C14324	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors	
UBR5	51366	genome.wustl.edu	37	8	103284901	103284901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103284901	103284901	C	T	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	missense	c.6829	p.V2277I	1.000	superfamily_HECT	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
UBXN11	91544	genome.wustl.edu	37	1	26608929	26608929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26608929	26608929	G	A	SNP	UBXN11	NM_183008	human	genbank	57_37b	-1	reviewed	missense	c.1424	p.P475L	0.003	NULL	superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,HMMPfam_SEP,superfamily_Ubiquitin-like,HMMPfam_UBX	-	no_errors	
VIP	7432	genome.wustl.edu	37	6	153077328	153077328	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	153077328	153077328	A	T	SNP	VIP	NM_003381	human	genbank	57_37b	+1	reviewed	missense	c.395	p.D132V	1.000	PatternScan_GLUCAGON,HMMSmart_SM00070,HMMPfam_Hormone_2	PatternScan_GLUCAGON,HMMSmart_SM00070,HMMPfam_Hormone_2	-	no_errors	
WDR76	79968	genome.wustl.edu	37	15	44119242	44119242	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44119242	44119242	G	T	SNP	WDR76	NM_024908	human	genbank	57_37b	+1	validated	silent	c.12	p.S4	0.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	
YLPM1	56252	genome.wustl.edu	37	14	75248571	75248571	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75248571	75248571	T	C	SNP	YLPM1	NM_019589	human	genbank	57_37b	+1	validated	missense	c.1825	p.S609P	0.397	NULL	HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ZCCHC6	79670	genome.wustl.edu	37	9	88920155	88920155	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88920155	88920155	C	T	SNP	ZCCHC6	NM_024617	human	genbank	57_37b	-1	validated	splice_site	c.3839-1	e22-1	1.000	-	-	-	no_errors	
ZDBF2	57683	genome.wustl.edu	37	2	207175720	207175720	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207175720	207175720	C	T	SNP	ZDBF2	NM_020923	human	genbank	57_37b	+1	validated	silent	c.6468	p.V2156	0.005	NULL	HMMPfam_zf-DBF	-	no_errors	
ZDHHC4	55146	genome.wustl.edu	37	7	6621256	6621256	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14P-01A-31D-A12B-09	TCGA-E2-A14P-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6621256	6621256	C	G	SNP	ZDHHC4	NM_001134387	human	genbank	57_37b	+1	validated	missense	c.136	p.P46A	0.972	NULL	HMMPfam_zf-DHHC	-	no_errors	
