Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACOT11	26027	genome.wustl.edu	37	1	55059698	55059698	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55059698	55059698	C	G	SNP	ACOT11	NM_015547	human	genbank	57_37b	+1	reviewed	missense	c.457	p.R153G	1.000	superfamily_Thioesterase/thiol ester dehydrase-isomerase	superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
ACVR1C	130399	genome.wustl.edu	37	2	158406760	158406760	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	158406760	158406760	C	A	SNP	ACVR1C	NM_145259	human	genbank	57_37b	-1	validated	missense	c.689	p.R230I	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
AHCTF1	25909	genome.wustl.edu	37	1	247014111	247014111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247014111	247014111	C	A	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	missense	c.5197	p.D1733Y	0.030	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
BCAS1	8537	genome.wustl.edu	37	20	52570137	52570137	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52570137	52570137	G	T	SNP	BCAS1	NM_003657	human	genbank	57_37b	-1	reviewed	nonsense	c.1514	p.S505*	0.006	NULL	NULL	-	no_errors	
BCAT1	586	genome.wustl.edu	37	12	24970952	24970952	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	24970952	24970952	A	G	SNP	BCAT1	NM_005504	human	genbank	57_37b	-1	reviewed	missense	c.1151	p.V384A	0.000	superfamily_Aminotrans_IV	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors	
BRAF	673	genome.wustl.edu	37	7	140476796	140476796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	140476796	140476796	A	G	SNP	BRAF	NM_004333	human	genbank	57_37b	-1	reviewed	missense	c.1610	p.L537S	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
C10orf47	254427	genome.wustl.edu	37	10	11908656	11908660	+	Frame_Shift_Del	DEL	CTCTG	CTCTG	-	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	CTCTG	CTCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	11908656	11908660	CTCTG	-	DEL	C10orf47	NM_153256	human	genbank	57_37b	+1	validated	frame_shift_del	c.265_269	p.C90fs	1.000:1.000:0.996:0.996:0.960	NULL	NULL	(deletion:cds_exon[11908530,11908782])	no_errors	
CACNA1B	774	genome.wustl.edu	37	9	140938304	140938304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140938304	140938304	G	A	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	missense	c.3365	p.R1122Q	0.998	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNA1F	778	genome.wustl.edu	37	X	49065116	49065116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49065116	49065116	C	T	SNP	CACNA1F	NM_005183	human	genbank	57_37b	-1	reviewed	missense	c.5015	p.R1672H	0.416	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CHRNB2	1141	genome.wustl.edu	37	1	154543672	154543672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154543672	154543672	G	A	SNP	CHRNB2	NM_000748	human	genbank	57_37b	+1	reviewed	missense	c.373	p.G125S	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
CILP2	148113	genome.wustl.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19651140	19651140	A	G	SNP	CILP2	NM_153221	human	genbank	57_37b	+1	validated	silent	c.291	p.E97	1.000	NULL	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_CarboxypepD_reg,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-		
CLUL1	27098	genome.wustl.edu	37	18	618062	618062	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	618062	618062	C	T	SNP	CLUL1	NM_014410	human	genbank	57_37b	+1	validated	missense	c.62	p.A21V	0.996	HMMPfam_Clusterin	HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa	-	no_errors	
COL6A6	131873	genome.wustl.edu	37	3	130311931	130311931	+	Silent	SNP	C	C	T	rs115656707	by1000genomes	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130311931	130311931	C	T	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	silent	c.4398	p.D1466	0.834	HMMPfam_Collagen	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-		
COPG	22820	genome.wustl.edu	37	3	128996136	128996136	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128996136	128996136	G	C	SNP	COPG	NM_016128	human	genbank	57_37b	+1	validated	splice_site	c.2495-1	e24-1	1.000	-	-	-	no_errors	
CPS1	1373	genome.wustl.edu	37	2	211471611	211471611	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	211471611	211471611	T	G	SNP	CPS1	NM_001122633	human	genbank	57_37b	+1	reviewed	missense	c.2156	p.I719S	1.000	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_CPSASE_2	superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain,HMMPfam_CPSase_sm_chain,superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase,superfamily_PreATP-grasp domain,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Carbamoyl phosphate synthetase large subunit connection domain,HMMPfam_CPSase_L_D3,superfamily_Methylglyoxal synthase-like,HMMPfam_MGS	-	no_errors	
DNAH3	55567	genome.wustl.edu	37	16	20955961	20955961	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20955961	20955961	G	T	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.11368	p.L3790I	0.648	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors	
DNAH9	1770	genome.wustl.edu	37	17	11522985	11522985	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11522985	11522985	G	T	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	nonsense	c.1237	p.E413*	1.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors	
ENSG00000221734	0	genome.wustl.edu	37	9	117554504	117554505	+	RNA	INS	-	-	AC	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117554504	117554505	-	AC	INS	ENSG00000221734	ENST00000408807	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.007:0.007	-	-	-	no_errors	
ENSG00000245415	0	genome.wustl.edu	37	19	51301334	51301334	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51301334	51301334	G	A	SNP	ENSG00000245415	ENST00000501341	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ERBB4	2066	genome.wustl.edu	37	2	212543900	212543900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	212543900	212543900	C	T	SNP	ERBB4	NM_005235	human	genbank	57_37b	-1	reviewed	missense	c.1499	p.G500E	1.000	superfamily_L domain-like,HMMSmart_SM00261	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_YLP	-	no_errors	
EYS	346007	genome.wustl.edu	37	6	65301142	65301142	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	65301142	65301142	T	G	SNP	EYS	NM_001142800	human	genbank	57_37b	-1	reviewed	missense	c.4618	p.N1540H	1.000	superfamily_Concanavalin A-like lectins/glucanases	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
GNA14	9630	genome.wustl.edu	37	9	80046326	80046326	+	Silent	SNP	G	G	A	rs28395813	byCluster;by1000genomes	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	80046326	80046326	G	A	SNP	GNA14	NM_004297	human	genbank	57_37b	-1	reviewed	silent	c.504	p.F168	0.104	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-		
HAVCR1	26762	genome.wustl.edu	37	5	156464344	156464344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156464344	156464344	G	A	SNP	HAVCR1	NM_001099414	human	genbank	57_37b	-1	reviewed	missense	c.866	p.T289M	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,PatternScan_IG_MHC	-	no_errors	
ITGA1	3672	genome.wustl.edu	37	5	52216261	52216261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52216261	52216261	G	A	SNP	ITGA1	NM_181501	human	genbank	57_37b	+1	reviewed	missense	c.2255	p.R752Q	0.265	HMMPfam_Integrin_alpha2,superfamily_SSF69179	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA	-	no_errors	
KDM3A	55818	genome.wustl.edu	37	2	86705821	86705821	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86705821	86705821	T	G	SNP	KDM3A	NM_018433	human	genbank	57_37b	+1	reviewed	missense	c.2279	p.L760R	1.000	NULL	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors	
LCE6A	0	genome.wustl.edu	37	1	152816068	152816068	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152816068	152816068	C	T	SNP	LCE6A	NM_001128600	human	genbank	57_37b	+1	validated	silent	c.72	p.N24	0.000	NULL	NULL	-	no_errors	
LIG1	3978	genome.wustl.edu	37	19	48620916	48620916	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48620916	48620916	G	C	SNP	LIG1	NM_000234	human	genbank	57_37b	-1	reviewed	missense	c.2562	p.I854M	1.000	NULL	HMMPfam_DNA_ligase_A_N,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C	-	no_errors	
LOC100131669	0	genome.wustl.edu	37	18	42643576	42643576	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	42643576	42643576	C	G	SNP	LOC100131669	XM_001715120	human	genbank	57_37b	-1	model	missense	c.158	p.G53A	0.950	NULL	NULL	-	no_errors	
LOC100288017	0	genome.wustl.edu	37	21	14568634	14568634	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	14568634	14568634	G	A	SNP	LOC100288017	XM_002343737	human	genbank	57_37b	+1	model	silent	c.267	p.A89	0.024	NULL	NULL	-	no_errors	
LOC100288554	0	genome.wustl.edu	37	4	9423986	9423986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	9423986	9423986	C	T	SNP	LOC100288554	XM_002342446	human	genbank	57_37b	+1	model	missense	c.95	p.P32L	0.208	NULL	HMMPfam_Defensin_beta,superfamily_Defensin-like	-	no_errors	
MIR154	0	genome.wustl.edu	37	14	101526096	101526096	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101526096	101526096	T	C	SNP	MIR154	ENST00000385243	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.053	-	-	-	no_errors	
MORF4L2	9643	genome.wustl.edu	37	X	102931122	102931122	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	102931122	102931122	C	A	SNP	MORF4L2	NM_001142418	human	genbank	57_37b	-1	validated	silent	c.834	p.V278	1.000	NULL	HMMPfam_MRG	-	no_errors	
NCCRP1	342897	genome.wustl.edu	37	19	39690990	39690990	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39690990	39690990	G	T	SNP	NCCRP1	NM_001001414	human	genbank	57_37b	+1	provisional	nonsense	c.553	p.E185*	0.988	HMMPfam_FBA,superfamily_Gal_bind_like	HMMPfam_FBA,superfamily_Gal_bind_like	-	no_errors	
OR6Y1	391112	genome.wustl.edu	37	1	158517488	158517488	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158517488	158517488	G	C	SNP	OR6Y1	NM_001005189	human	genbank	57_37b	-1	provisional	silent	c.408	p.R136	0.379	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDH15	65217	genome.wustl.edu	37	10	55944938	55944938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	55944938	55944938	G	A	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	missense	c.1411	p.L471F	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors	
PPP1R10	5514	genome.wustl.edu	37	6	30571347	30571347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30571347	30571347	C	T	SNP	PPP1R10	NM_002714	human	genbank	57_37b	-1	reviewed	missense	c.1669	p.V557I	0.999	NULL	HMMSmart_SM00509,HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors	
PSMC4	5704	genome.wustl.edu	37	19	40480708	40480708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40480708	40480708	G	A	SNP	PSMC4	NM_006503	human	genbank	57_37b	+1	reviewed	missense	c.646	p.A216T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors	
RB1CC1	9821	genome.wustl.edu	37	8	53569190	53569190	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	53569190	53569190	T	A	SNP	RB1CC1	NM_014781	human	genbank	57_37b	-1	reviewed	nonsense	c.3199	p.K1067*	1.000	NULL	superfamily_SSF54236,HMMPfam_ATG11	-	no_errors	
RWDD2A	112611	genome.wustl.edu	37	6	83905471	83905471	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83905471	83905471	T	A	SNP	RWDD2A	NM_033411	human	genbank	57_37b	+1	validated	missense	c.359	p.V120E	0.812	superfamily_UBQ-conjugat/RWD-like,HMMPfam_RWD,HMMSmart_RWD	superfamily_UBQ-conjugat/RWD-like,HMMPfam_RWD,HMMSmart_RWD,HMMPfam_DUF1115	-	no_errors	
SCPEP1	59342	genome.wustl.edu	37	17	55058560	55058560	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	55058560	55058560	T	A	SNP	SCPEP1	NM_021626	human	genbank	57_37b	+1	validated	missense	c.194	p.F65Y	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER	-	no_errors	
SFMBT2	57713	genome.wustl.edu	37	10	7244480	7244480	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	7244480	7244480	T	G	SNP	SFMBT2	NM_001029880	human	genbank	57_37b	-1	provisional	missense	c.1449	p.Q483H	1.000	superfamily_Tudor/PWWP/MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors	
SLC35D1	23169	genome.wustl.edu	37	1	67507959	67507959	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67507959	67507959	G	C	SNP	SLC35D1	NM_015139	human	genbank	57_37b	-1	reviewed	missense	c.689	p.P230R	1.000	NULL	HMMPfam_TPT	-	no_errors	
SLC44A5	204962	genome.wustl.edu	37	1	75708648	75708648	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	75708648	75708648	G	C	SNP	SLC44A5	NM_152697	human	genbank	57_37b	-1	validated	missense	c.394	p.Q132E	1.000	NULL	HMMPfam_DUF580	-	no_errors	
SPEG	10290	genome.wustl.edu	37	2	220354392	220354392	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220354392	220354392	A	C	SNP	SPEG	NM_005876	human	genbank	57_37b	+1	validated	silent	c.8652	p.P2884	0.971	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00219	-	no_errors	
SULT1E1	6783	genome.wustl.edu	37	4	70715248	70715248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70715248	70715248	C	T	SNP	SULT1E1	NM_005420	human	genbank	57_37b	-1	reviewed	missense	c.403	p.A135T	0.994	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
TMCO4	255104	genome.wustl.edu	37	1	20009551	20009551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20009551	20009551	G	A	SNP	TMCO4	NM_181719	human	genbank	57_37b	-1	validated	silent	c.1887	p.P629	0.912	NULL	HMMPfam_DUF726	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578402	7578402	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578402	7578402	G	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.528	p.C176*	0.998	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	215953312	215953312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215953312	215953312	C	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	silent	c.10812	p.V3604	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
USP33	23032	genome.wustl.edu	37	1	78194177	78194177	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78194177	78194177	T	A	SNP	USP33	NM_015017	human	genbank	57_37b	-1	validated	missense	c.1031	p.N344I	0.999	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_SM00695	-	no_errors	
ZEB1	6935	genome.wustl.edu	37	10	31810768	31810768	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31810768	31810768	G	A	SNP	ZEB1	NM_030751	human	genbank	57_37b	+1	validated	silent	c.2505	p.T835	0.878	NULL	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors	
ZNF217	7764	genome.wustl.edu	37	20	52192498	52192498	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52192498	52192498	A	G	SNP	ZNF217	NM_006526	human	genbank	57_37b	-1	validated	silent	c.2805	p.N935	0.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
ZNF365	22891	genome.wustl.edu	37	10	64425930	64425930	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A150-01A-11D-A12B-09	TCGA-E2-A150-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	64425930	64425930	T	C	SNP	ZNF365	NM_199451	human	genbank	57_37b	+1	validated	missense	c.1262	p.L421P	0.000	NULL	HMMSmart_ZnF_C2H2	-	no_errors	
