Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACLY	47	genome.wustl.edu	37	17	40042364	40042364	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40042364	40042364	C	T	SNP	ACLY	NM_001096	human	genbank	57_37b	-1	reviewed	splice_site	c.2072+1	e17+1	1.000	-	-	-	no_errors	
BTNL8	79908	genome.wustl.edu	37	5	180377233	180377233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180377233	180377233	G	A	SNP	BTNL8	NM_001040462	human	genbank	57_37b	+1	validated	missense	c.1192	p.V398I	0.000	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
C7orf23	79161	genome.wustl.edu	37	7	86825961	86825961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86825961	86825961	C	T	SNP	C7orf23	NM_024315	human	genbank	57_37b	-1	provisional	silent	c.348	p.V116	1.000	NULL	NULL	-	no_errors	
CABIN1	23523	genome.wustl.edu	37	22	24463095	24463095	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24463095	24463095	C	-	DEL	CABIN1	NM_012295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2195	p.I733fs	0.996	superfamily_SSF48452	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_MEF2_binding	(deletion:cds_exon[24462938,24463132])	no_errors	
CAST	831	genome.wustl.edu	37	5	96077234	96077234	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	96077234	96077234	A	T	SNP	CAST	NM_001750	human	genbank	57_37b	+1	reviewed	missense	c.1048	p.T350S	0.000	HMMPfam_Calpain_inhib	HMMPfam_Calpain_inhib	-	no_errors	
CHD1	1105	genome.wustl.edu	37	5	98236686	98236686	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	98236686	98236686	T	G	SNP	CHD1	NM_001270	human	genbank	57_37b	-1	reviewed	silent	c.688	p.R230	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors	
COPA	1314	genome.wustl.edu	37	1	160261650	160261650	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160261650	160261650	G	C	SNP	COPA	NM_001098398	human	genbank	57_37b	-1	reviewed	missense	c.3244	p.L1082V	1.000	HMMPfam_COPI_C	HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Coatomer_WDAD,HMMPfam_COPI_C,superfamily_Calret_calnex_P	-	no_errors	
CUL7	9820	genome.wustl.edu	37	6	43014812	43014812	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43014812	43014812	G	-	DEL	CUL7	NM_014780	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2203	p.L735fs	1.000	NULL	PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785	(deletion:cds_exon[43014618,43014845])	no_errors	
CUL7	9820	genome.wustl.edu	37	6	43014815	43014822	+	Frame_Shift_Del	DEL	GGTGCAGG	GGTGCAGG	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	GGTGCAGG	GGTGCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43014815	43014822	GGTGCAGG	-	DEL	CUL7	NM_014780	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2200_2193	p.F731fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	(deletion:cds_exon[43014618,43014845])	no_errors	
ECE1	1889	genome.wustl.edu	37	1	21546502	21546502	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21546502	21546502	G	C	SNP	ECE1	NM_001397	human	genbank	57_37b	-1	reviewed	missense	c.2259	p.F753L	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	-	no_errors	
ENSG00000225672	0	genome.wustl.edu	37	1	111550737	111550737	+	Splice_Site	SNP	T	T	C	rs77082493	byCluster;byFrequency;by1000genomes	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111550737	111550737	T	C	SNP	ENSG00000225672	ENST00000423082	human	ensembl	57_37b	-1	known	splice_site	c.NULL	NULL	0.988	-	-	-		
ENSG00000237368	0	genome.wustl.edu	37	18	14156653	14156654	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	14156653	14156654	-	A	INS	ENSG00000237368	ENST00000418350	human	ensembl	57_37b	-1	known	frame_shift_ins	c.92_91	p.C31fs	1.000:1.000	NULL	NULL	-	no_errors	
ENSG00000244770	0	genome.wustl.edu	37	X	78618400	78618400	+	RNA	SNP	A	A	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	78618400	78618400	A	G	SNP	ENSG00000244770	ENST00000501472	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.005	-	-	-	no_errors	
FAM66D	100132923	genome.wustl.edu	37	8	12037650	12037651	+	RNA	INS	-	-	AACA	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12037650	12037651	-	AACA	INS	FAM66D	XR_079501	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.234:0.213	-	-	-	no_errors	
FER1L6	654463	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125047696	125047696	G	T	SNP	FER1L6	NM_001039112	human	genbank	57_37b	+1	validated	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors	
GPR179	440435	genome.wustl.edu	37	17	36491508	36491508	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36491508	36491508	T	C	SNP	GPR179	NM_001004334	human	genbank	57_37b	-1	validated	missense	c.1372	p.I458V	0.834	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	no_errors	
GRB7	2886	genome.wustl.edu	37	17	37899253	37899253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37899253	37899253	G	A	SNP	GRB7	NM_001030002	human	genbank	57_37b	+1	reviewed	missense	c.409	p.A137T	0.999	HMMPfam_RA,HMMSmart_SM00314	HMMPfam_RA,HMMSmart_SM00314,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
HMGB2	3148	genome.wustl.edu	37	4	174254765	174254765	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	174254765	174254765	T	A	SNP	HMGB2	NM_001130688	human	genbank	57_37b	-1	reviewed	missense	c.36	p.K12N	0.941	superfamily_HMG-box,HMMSmart_SM00398	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box,PatternScan_HMG_BOX_1	-	no_errors	
HNRNPH1	3187	genome.wustl.edu	37	5	179044055	179044055	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179044055	179044055	A	T	SNP	HNRNPH1	NM_005520	human	genbank	57_37b	-1	reviewed	missense	c.1114	p.Y372N	1.000	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors	
KIAA1755	85449	genome.wustl.edu	37	20	36869418	36869418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36869418	36869418	G	A	SNP	KIAA1755	NM_001029864	human	genbank	57_37b	-1	predicted	missense	c.1115	p.S372F	0.037	NULL	superfamily_Spectrin repeat	-	no_errors	
KISS1R	84634	genome.wustl.edu	37	19	918593	918593	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	918593	918593	C	T	SNP	KISS1R	NM_032551	human	genbank	57_37b	+1	reviewed	silent	c.294	p.F98	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
LOC100288469	0	genome.wustl.edu	37	19	7570384	7570384	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7570384	7570384	C	A	SNP	LOC100288469	XM_002344248	human	genbank	57_37b	-1	model	splice_site	c.176+1	e2+1	0.000	-	-	-	no_errors	
LOC283685	0	genome.wustl.edu	37	15	23685786	23685786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23685786	23685786	G	A	SNP	LOC283685	XM_002343322	human	genbank	57_37b	-1	model	missense	c.1625	p.T542M	0.069	NULL	NULL	-	no_errors	
LOXL3	84695	genome.wustl.edu	37	2	74762803	74762803	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74762803	74762803	C	A	SNP	LOXL3	NM_032603	human	genbank	57_37b	-1	reviewed	missense	c.1328	p.G443V	1.000	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors	
LRRC4B	94030	genome.wustl.edu	37	19	51021653	51021653	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51021653	51021653	C	A	SNP	LRRC4B	NM_001080457	human	genbank	57_37b	-1	provisional	silent	c.1317	p.T439	0.999	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
MAGEB1	4112	genome.wustl.edu	37	X	30268880	30268880	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	30268880	30268880	T	C	SNP	MAGEB1	NM_002363	human	genbank	57_37b	+1	reviewed	silent	c.270	p.N90	0.000	NULL	HMMPfam_MAGE	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56160578	56160579	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56160578	56160579	CA	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.852_853	p.P286fs	1.000:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56160561,56160761])	no_errors	
MCCC1	56922	genome.wustl.edu	37	3	182817227	182817228	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	182817227	182817228	-	T	INS	MCCC1	NM_020166	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.2_1	p.M1fs	0.283:0.272	NULL	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors	
MEF2A	4205	genome.wustl.edu	37	15	100173343	100173347	+	Frame_Shift_Del	DEL	CAAAT	CAAAT	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CAAAT	CAAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100173343	100173347	CAAAT	-	DEL	MEF2A	NM_005587	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.19_23	p.Q7fs	1.000:1.000:1.000:1.000:1.000	HMMSmart_MADS,superfamily_TF_MADSbox,PatternScan_MADS_BOX_1	HMMSmart_MADS,superfamily_TF_MADSbox,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF	(deletion:cds_exon[100173325,100173378])	no_errors	
MSLNL	0	genome.wustl.edu	37	16	830767	830768	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	830767	830768	-	CT	INS	MSLNL	NM_001025190	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.234_233	p.V79fs	0.006:0.015	NULL	HMMPfam_Mesothelin	-	no_errors	
MTOR	2475	genome.wustl.edu	37	1	11188177	11188177	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11188177	11188177	T	A	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	missense	c.5917	p.I1973F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195509202	195509202	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195509202	195509202	T	G	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.8865	p.T2955	0.003	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors	
NEK5	341676	genome.wustl.edu	37	13	52684534	52684534	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52684534	52684534	T	C	SNP	NEK5	NM_199289	human	genbank	57_37b	-1	provisional	missense	c.409	p.S137G	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
OR10K1	391109	genome.wustl.edu	37	1	158435388	158435388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158435388	158435388	G	A	SNP	OR10K1	NM_001004473	human	genbank	57_37b	+1	provisional	missense	c.37	p.V13I	0.853	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PCDHA3	56145	genome.wustl.edu	37	5	140182767	140182767	+	Missense_Mutation	SNP	C	C	T	rs17844261	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140182767	140182767	C	T	SNP	PCDHA3	NM_018906	human	genbank	57_37b	+1	reviewed	missense	c.1985	p.T662M	0.995	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PLEKHG5	57449	genome.wustl.edu	37	1	6529190	6529191	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6529190	6529191	CC	-	DEL	PLEKHG5	NM_198681	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2392_2391	p.E798fs	0.943:0.975	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	(deletion:cds_exon[6529102,6529301])	no_errors	
RBM19	9904	genome.wustl.edu	37	12	114386694	114386694	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	114386694	114386694	C	A	SNP	RBM19	NM_016196	human	genbank	57_37b	-1	reviewed	missense	c.1220	p.R407L	0.701	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMSmart_SM00361	-	no_errors	
SERPINA5	5104	genome.wustl.edu	37	14	95053768	95053768	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95053768	95053768	C	A	SNP	SERPINA5	NM_000624	human	genbank	57_37b	+1	validated	missense	c.69	p.H23Q	0.000	superfamily_Serpins	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SLC35F3	148641	genome.wustl.edu	37	1	234367371	234367371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234367371	234367371	C	T	SNP	SLC35F3	NM_173508	human	genbank	57_37b	+1	provisional	silent	c.492	p.D164	0.993	NULL	superfamily_SSF103481,HMMPfam_DUF6	-	no_errors	
SLC40A1	30061	genome.wustl.edu	37	2	190428601	190428601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190428601	190428601	G	A	SNP	SLC40A1	NM_014585	human	genbank	57_37b	-1	reviewed	missense	c.1111	p.R371W	1.000	superfamily_MFS general substrate transporter,HMMPfam_FPN1	superfamily_MFS general substrate transporter,HMMPfam_FPN1	-	no_errors	
SNORD83B	0	genome.wustl.edu	37	22	39711580	39711582	+	RNA	DEL	GCT	GCT	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39711580	39711582	GCT	-	DEL	SNORD83B	ENST00000501495	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.021:0.050:0.049	-	-	(deletion:rna[39708890,39714325])	no_errors	
SOAT1	6646	genome.wustl.edu	37	1	179310278	179310278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179310278	179310278	C	T	SNP	SOAT1	NM_003101	human	genbank	57_37b	+1	provisional	missense	c.613	p.H205Y	0.001	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136078054	136078054	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136078054	136078054	G	A	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	missense	c.2872	p.R958C	0.998	NULL	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors	
TACSTD2	4070	genome.wustl.edu	37	1	59042071	59042071	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	59042071	59042071	A	C	SNP	TACSTD2	NM_002353	human	genbank	57_37b	-1	reviewed	missense	c.758	p.V253G	0.999	NULL	superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY	-	no_errors	
TCOF1	6949	genome.wustl.edu	37	5	149773041	149773041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149773041	149773041	C	T	SNP	TCOF1	NM_001135243	human	genbank	57_37b	+1	reviewed	missense	c.3707	p.A1236V	0.000	NULL	HMMSmart_SM00667,HMMPfam_Treacle	-	no_errors	
TNS4	84951	genome.wustl.edu	37	17	38645125	38645125	+	Missense_Mutation	SNP	A	A	G	rs3764424	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38645125	38645125	A	G	SNP	TNS4	NM_032865	human	genbank	57_37b	-1	validated	missense	c.536	p.L179P	0.942	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMPfam_PTB	-		
UBE4B	10277	genome.wustl.edu	37	1	10205077	10205077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10205077	10205077	C	T	SNP	UBE4B	NM_001105562	human	genbank	57_37b	+1	reviewed	missense	c.2443	p.R815C	1.000	HMMPfam_Ufd2P_core	HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504	-	no_errors	
ZNF492	57615	genome.wustl.edu	37	19	22847203	22847203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22847203	22847203	G	A	SNP	ZNF492	NM_020855	human	genbank	57_37b	+1	validated	silent	c.732	p.K244	0.957	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
