Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM7	8756	genome.wustl.edu	37	8	24300020	24300020	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	24300020	24300020	G	C	SNP	ADAM7	ENST00000380789	human	ensembl	57_37b	+1	known	silent	c.87	p.L29	0.886	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors	
ALDH3B1	221	genome.wustl.edu	37	11	67786655	67786655	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67786655	67786655	G	A	SNP	ALDH3B1	ENST00000007633	human	ensembl	57_37b	+1	known	silent	c.408	p.L136	0.999	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ARL6IP6	151188	genome.wustl.edu	37	2	153575347	153575347	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	153575347	153575347	G	T	SNP	ARL6IP6	NM_152522	human	genbank	57_37b	+1	validated	missense	c.209	p.R70L	0.000	NULL	NULL	-	no_errors	
BAI1	575	genome.wustl.edu	37	8	143546131	143546131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143546131	143546131	G	A	SNP	BAI1	NM_001702	human	genbank	57_37b	+1	reviewed	missense	c.572	p.R191H	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors	
C10orf18	54906	genome.wustl.edu	37	10	5789754	5789754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5789754	5789754	G	T	SNP	C10orf18	NM_017782	human	genbank	57_37b	+1	validated	missense	c.4370	p.G1457V	0.004	NULL	NULL	-	no_errors	
C1orf65	164127	genome.wustl.edu	37	1	223567803	223567803	+	Missense_Mutation	SNP	G	G	A	rs10907376	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223567803	223567803	G	A	SNP	C1orf65	NM_152610	human	genbank	57_37b	+1	validated	missense	c.986	p.G329D	0.000	NULL	NULL	-		
C2CD3	26005	genome.wustl.edu	37	11	73809103	73809103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73809103	73809103	G	C	SNP	C2CD3	NM_015531	human	genbank	57_37b	-1	validated	missense	c.2930	p.P977R	0.008	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors	
C3orf27	23434	genome.wustl.edu	37	3	128292138	128292138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128292138	128292138	G	A	SNP	C3orf27	NM_007354	human	genbank	57_37b	-1	provisional	silent	c.435	p.F145	0.000	NULL	NULL	-	no_errors	
CA2	760	genome.wustl.edu	37	8	86389385	86389385	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	86389385	86389385	G	C	SNP	CA2	NM_000067	human	genbank	57_37b	+1	reviewed	missense	c.544	p.G182R	0.000	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors	
CASP6	839	genome.wustl.edu	37	4	110610542	110610542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110610542	110610542	G	A	SNP	CASP6	NM_001226	human	genbank	57_37b	-1	reviewed	missense	c.826	p.P276S	1.000	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors	
CCDC129	223075	genome.wustl.edu	37	7	31690768	31690768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31690768	31690768	G	C	SNP	CCDC129	NM_194300	human	genbank	57_37b	+1	validated	missense	c.2596	p.E866Q	0.902	NULL	PatternScan_PA2_HIS	-	no_errors	
CDC42BPG	55561	genome.wustl.edu	37	11	64597091	64597091	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64597091	64597091	G	A	SNP	CDC42BPG	NM_017525	human	genbank	57_37b	-1	validated	silent	c.3819	p.R1273	0.574	HMMSmart_SM00036,HMMPfam_CNH	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH,HMMPfam_PBD	-	no_errors	
CDC42BPG	55561	genome.wustl.edu	37	11	64597720	64597720	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64597720	64597720	G	A	SNP	CDC42BPG	NM_017525	human	genbank	57_37b	-1	validated	nonsense	c.3313	p.R1105*	0.998	HMMPfam_CNH,HMMSmart_SM00036	HMMPfam_PBD,HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DMPK_coil,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors	
CENPQ	55166	genome.wustl.edu	37	6	49438722	49438722	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49438722	49438722	G	C	SNP	CENPQ	NM_018132	human	genbank	57_37b	+1	validated	silent	c.138	p.L46	0.005	NULL	NULL	-	no_errors	
CHST3	9469	genome.wustl.edu	37	10	73767170	73767170	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	73767170	73767170	C	A	SNP	CHST3	NM_004273	human	genbank	57_37b	+1	reviewed	silent	c.381	p.A127	0.000	NULL	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	-	no_errors	
CNTN1	1272	genome.wustl.edu	37	12	41337930	41337930	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	41337930	41337930	C	A	SNP	CNTN1	NM_001843	human	genbank	57_37b	+1	reviewed	silent	c.1641	p.I547	0.296	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
COIL	8161	genome.wustl.edu	37	17	55028115	55028116	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	55028115	55028116	TT	-	DEL	COIL	NM_004645	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.488_487	p.K163fs	0.841:0.831	NULL	NULL	(deletion:cds_exon[55027250,55028357])	no_errors	
COL29A1	256076	genome.wustl.edu	37	3	130116760	130116760	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130116760	130116760	G	T	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	missense	c.3902	p.R1301L	0.079	superfamily_SSF53300	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
COL7A1	1294	genome.wustl.edu	37	3	48627949	48627949	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48627949	48627949	C	A	SNP	COL7A1	NM_000094	human	genbank	57_37b	-1	reviewed	missense	c.1849	p.A617S	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CUL1	8454	genome.wustl.edu	37	7	148454195	148454195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148454195	148454195	C	T	SNP	CUL1	NM_003592	human	genbank	57_37b	+1	validated	missense	c.436	p.R146C	1.000	superfamily_Cullin repeat,HMMPfam_Cullin	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
CUL9	23113	genome.wustl.edu	37	6	43188323	43188323	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43188323	43188323	G	C	SNP	CUL9	NM_015089	human	genbank	57_37b	+1	validated	missense	c.6409	p.E2137Q	1.000	superfamily_RING/U-box	"superfamily_ARM repeat,superfamily_Galactose-binding domain-like,HMMPfam_APC10,PatternScan_CYTOCHROME_P450,HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_""Winged helix"" DNA-binding domain,PatternScan_CULLIN_1,superfamily_RING/U-box,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors	
DCLK1	9201	genome.wustl.edu	37	13	36348770	36348770	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36348770	36348770	A	T	SNP	DCLK1	ENST00000360631	human	ensembl	57_37b	-1	known	missense	c.2125	p.Y709N	0.900	NULL	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ENSG00000225802	0	genome.wustl.edu	37	11	59022865	59022865	+	Missense_Mutation	SNP	G	G	A	rs4938915	byCluster;byFrequency;by1000genomes	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59022865	59022865	G	A	SNP	ENSG00000225802	ENST00000455673	human	ensembl	57_37b	+1	known	missense	c.25	p.A9T	1.000	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase	-		
EPAS1	2034	genome.wustl.edu	37	2	46587815	46587815	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46587815	46587815	G	C	SNP	EPAS1	NM_001430	human	genbank	57_37b	+1	reviewed	missense	c.493	p.E165Q	0.999	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_HIF-1a_CTAD	-	no_errors	
FAM193B	54540	genome.wustl.edu	37	5	176947013	176947013	+	RNA	SNP	A	A	C	rs41275299	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176947013	176947013	A	C	SNP	FAM193B	NR_024019	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
GOLGA6L1	0	genome.wustl.edu	37	15	22743235	22743235	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22743235	22743235	A	G	SNP	GOLGA6L1	NM_001001413	human	genbank	57_37b	+1	provisional	silent	c.1620	p.R540	0.274	NULL	NULL	-	no_errors	
H6PD	9563	genome.wustl.edu	37	1	9324571	9324571	+	Silent	SNP	T	T	C	rs9434742	byCluster;byFrequency;by1000genomes	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	9324571	9324571	T	C	SNP	H6PD	NM_004285	human	genbank	57_37b	+1	reviewed	silent	c.2019	p.Y673	0.045	superfamily_SSF100950,HMMPfam_Glucosamine_iso	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C,superfamily_SSF100950,HMMPfam_Glucosamine_iso	-		
HCN3	57657	genome.wustl.edu	37	1	155255046	155255046	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155255046	155255046	G	T	SNP	HCN3	NM_020897	human	genbank	57_37b	+1	validated	missense	c.1180	p.G394C	1.000	superfamily_cNMP_binding	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	-	no_errors	
HIST1H1B	3009	genome.wustl.edu	37	6	27834744	27834744	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27834744	27834744	C	G	SNP	HIST1H1B	NM_005322	human	genbank	57_37b	-1	reviewed	missense	c.564	p.K188N	1.000	NULL	superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone	-	no_errors	
ITGB4	3691	genome.wustl.edu	37	17	73748569	73748569	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73748569	73748569	G	A	SNP	ITGB4	NM_000213	human	genbank	57_37b	+1	reviewed	missense	c.4019	p.G1340E	1.000	NULL	HMMSmart_SM00423,HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,HMMPfam_EGF_2,superfamily_Integrin beta tail domain,HMMPfam_Integrin_B_tail,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
IWS1	55677	genome.wustl.edu	37	2	128250923	128250923	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128250923	128250923	T	G	SNP	IWS1	NM_017969	human	genbank	57_37b	-1	validated	silent	c.1863	p.S621	0.935	HMMPfam_IWS1_C	HMMPfam_IWS1_C	-	no_errors	
KCNH2	3757	genome.wustl.edu	37	7	150645546	150645546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150645546	150645546	C	T	SNP	KCNH2	NM_000238	human	genbank	57_37b	-1	reviewed	missense	c.2678	p.R893K	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
KCNQ3	3786	genome.wustl.edu	37	8	133182583	133182583	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133182583	133182583	G	A	SNP	KCNQ3	NM_004519	human	genbank	57_37b	-1	reviewed	silent	c.1233	p.F411	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
KIAA1804	84451	genome.wustl.edu	37	1	233482294	233482294	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233482294	233482294	A	G	SNP	KIAA1804	NM_032435	human	genbank	57_37b	+1	validated	silent	c.912	p.T304	0.357	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
KIF1B	23095	genome.wustl.edu	37	1	10364067	10364067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10364067	10364067	C	T	SNP	KIF1B	NM_183416	human	genbank	57_37b	+1	reviewed	missense	c.2824	p.R942C	0.998	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors	
LYG1	129530	genome.wustl.edu	37	2	99907849	99907849	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99907849	99907849	T	C	SNP	LYG1	NM_174898	human	genbank	57_37b	-1	validated	missense	c.184	p.M62V	0.996	superfamily_Lysozyme-like	superfamily_Lysozyme-like	-	no_errors	
MARCH5	54708	genome.wustl.edu	37	10	94110927	94110927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	94110927	94110927	G	A	SNP	MARCH5	NM_017824	human	genbank	57_37b	+1	validated	missense	c.800	p.R267H	1.000	NULL	HMMSmart_SM00744,HMMPfam_zf-C3HC4	-	no_errors	
MIR612	0	genome.wustl.edu	37	11	65211932	65211932	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65211932	65211932	C	A	SNP	MIR612	ENST00000384994	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	
MPPED2	744	genome.wustl.edu	37	11	30433116	30433116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	30433116	30433116	C	T	SNP	MPPED2	NM_001584	human	genbank	57_37b	-1	reviewed	missense	c.784	p.D262N	1.000	superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	-	no_errors	
NKX6-2	84504	genome.wustl.edu	37	10	134598422	134598422	+	Nonstop_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	134598422	134598422	A	G	SNP	NKX6-2	NM_177400	human	genbank	57_37b	-1	validated	nonstop	c.832	p.*278R	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
NRK	203447	genome.wustl.edu	37	X	105152799	105152799	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105152799	105152799	C	A	SNP	NRK	NM_198465	human	genbank	57_37b	+1	validated	missense	c.1166	p.P389H	0.255	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
ODZ1	10178	genome.wustl.edu	37	X	123556236	123556236	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123556236	123556236	C	T	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	missense	c.4336	p.E1446K	1.000	superfamily_SSF101898,superfamily_N2O_reductase_N	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors	
OR5AS1	219447	genome.wustl.edu	37	11	55798847	55798847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55798847	55798847	G	A	SNP	OR5AS1	NM_001001921	human	genbank	57_37b	+1	provisional	missense	c.953	p.R318H	0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PKHD1L1	93035	genome.wustl.edu	37	8	110461681	110461681	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	110461681	110461681	A	C	SNP	PKHD1L1	NM_177531	human	genbank	57_37b	+1	validated	missense	c.6140	p.Y2047S	0.000	superfamily_E set domains,HMMPfam_TIG,HMMSmart_SM00429	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors	
PNPLA7	375775	genome.wustl.edu	37	9	140400143	140400143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140400143	140400143	C	T	SNP	PNPLA7	NM_001098537	human	genbank	57_37b	-1	validated	missense	c.1396	p.E466K	0.677	NULL	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	-	no_errors	
SEPT1	1731	genome.wustl.edu	37	16	30392785	30392785	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30392785	30392785	C	A	SNP	SEPT1	NM_052838	human	genbank	57_37b	-1	reviewed	silent	c.315	p.P105	0.001	superfamily_SSF52540,HMMPfam_Septin	superfamily_SSF52540,HMMPfam_Septin	-	no_errors	
SIGLEC8	27181	genome.wustl.edu	37	19	51961309	51961309	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51961309	51961309	G	C	SNP	SIGLEC8	NM_014442	human	genbank	57_37b	-1	validated	missense	c.333	p.I111M	0.077	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
SLC1A4	6509	genome.wustl.edu	37	2	65217239	65217239	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65217239	65217239	G	T	SNP	SLC1A4	NM_003038	human	genbank	57_37b	+1	validated	silent	c.462	p.G154	0.736	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors	
TANC1	85461	genome.wustl.edu	37	2	160006902	160006902	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160006902	160006902	A	C	SNP	TANC1	NM_033394	human	genbank	57_37b	+1	validated	missense	c.517	p.I173L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors	
TNN	63923	genome.wustl.edu	37	1	175046741	175046741	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	175046741	175046741	C	G	SNP	TNN	NM_022093	human	genbank	57_37b	+1	validated	missense	c.187	p.Q63E	0.001	NULL	PatternScan_EGF_1,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
TOPBP1	11073	genome.wustl.edu	37	3	133347430	133347430	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133347430	133347430	G	C	SNP	TOPBP1	NM_007027	human	genbank	57_37b	-1	reviewed	missense	c.2668	p.Q890E	0.996	NULL	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_Uteroglobin-like	-	no_errors	
TRIM14	9830	genome.wustl.edu	37	9	100862335	100862335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100862335	100862335	G	A	SNP	TRIM14	NM_014788	human	genbank	57_37b	-1	reviewed	missense	c.415	p.L139F	0.601	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
TRPC5	7224	genome.wustl.edu	37	X	111097215	111097215	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111097215	111097215	C	A	SNP	TRPC5	NM_012471	human	genbank	57_37b	-1	validated	silent	c.1020	p.L340	1.000	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors	
TYW3	127253	genome.wustl.edu	37	1	75229641	75229641	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	75229641	75229641	C	G	SNP	TYW3	NM_138467	human	genbank	57_37b	+1	validated	missense	c.624	p.I208M	0.052	NULL	HMMPfam_TYW3,superfamily_DUF207	-	no_errors	
UNC119B	84747	genome.wustl.edu	37	12	121148295	121148295	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121148295	121148295	G	A	SNP	UNC119B	NM_001080533	human	genbank	57_37b	+1	provisional	silent	c.18	p.P6	0.836	NULL	superfamily_Ig_E-set,HMMPfam_GMP_PDE_delta	-	no_errors	
VPS45	11311	genome.wustl.edu	37	1	150054883	150054883	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150054883	150054883	A	C	SNP	VPS45	NM_007259	human	genbank	57_37b	+1	reviewed	silent	c.1020	p.R340	0.998	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_errors	
WBSCR22	114049	genome.wustl.edu	37	7	73100970	73100970	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73100970	73100970	C	A	SNP	WBSCR22	NM_017528	human	genbank	57_37b	+1	reviewed	silent	c.91	p.R31	0.991	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors	
ZNF611	81856	genome.wustl.edu	37	19	53208630	53208630	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53208630	53208630	G	C	SNP	ZNF611	NM_030972	human	genbank	57_37b	-1	validated	missense	c.1678	p.H560D	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_Multiheme cytochromes	-	no_errors	
ZNF665	79788	genome.wustl.edu	37	19	53668314	53668314	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1AZ-01A-11D-A12Q-09	TCGA-E2-A1AZ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53668314	53668314	G	A	SNP	ZNF665	NM_024733	human	genbank	57_37b	-1	provisional	missense	c.1429	p.R477W	0.007	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
