Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS5	11096	genome.wustl.edu	37	21	28305265	28305265	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28305265	28305265	G	T	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	missense	c.1788	p.N596K	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ATP8B3	148229	genome.wustl.edu	37	19	1802548	1802548	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1802548	1802548	A	C	SNP	ATP8B3	NM_138813	human	genbank	57_37b	-1	reviewed	missense	c.1001	p.L334R	0.984	superfamily_SSF81653,HMMPfam_E1-E2_ATPase	superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1	-	no_errors	
BMP8B	656	genome.wustl.edu	37	1	40226145	40226145	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40226145	40226145	A	G	SNP	BMP8B	NM_001720	human	genbank	57_37b	-1	reviewed	silent	c.1155	p.N385	0.946	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
CD96	10225	genome.wustl.edu	37	3	111304209	111304209	+	Missense_Mutation	SNP	C	C	A	rs119477056	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111304209	111304209	C	A	SNP	CD96	NM_198196	human	genbank	57_37b	+1	reviewed	missense	c.839	p.T280K	0.000	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-		
CDHR2	0	genome.wustl.edu	37	5	176004515	176004515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176004515	176004515	C	T	SNP	CDHR2	NM_017675	human	genbank	57_37b	+1	reviewed	missense	c.1310	p.A437V	0.000	superfamily_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors	
DGCR2	9993	genome.wustl.edu	37	22	19076962	19076962	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19076962	19076962	T	G	SNP	DGCR2	NM_005137	human	genbank	57_37b	-1	validated	missense	c.121	p.T41P	0.867	HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa	HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMSmart_VWC,PatternScan_VWFC_1	-	no_errors	
DNAH5	1767	genome.wustl.edu	37	5	13902213	13902213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13902213	13902213	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	missense	c.1679	p.A560V	1.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DOCK3	1795	genome.wustl.edu	37	3	51393602	51393602	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	51393602	51393602	C	A	SNP	DOCK3	NM_004947	human	genbank	57_37b	+1	validated	missense	c.4332	p.S1444R	1.000	HMMPfam_Ded_cyto	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,HMMPfam_Ded_cyto	-	no_errors	
DSG1	1828	genome.wustl.edu	37	18	28934692	28934692	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	28934692	28934692	G	C	SNP	DSG1	NM_001942	human	genbank	57_37b	+1	reviewed	missense	c.2533	p.D845H	0.997	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C,PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
ELAC2	60528	genome.wustl.edu	37	17	12897055	12897055	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12897055	12897055	G	A	SNP	ELAC2	NM_018127	human	genbank	57_37b	-1	reviewed	silent	c.2202	p.L734	0.996	NULL	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B	-	no_errors	
ENOX1	55068	genome.wustl.edu	37	13	43810874	43810874	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	43810874	43810874	C	A	SNP	ENOX1	NM_001127615	human	genbank	57_37b	-1	validated	nonsense	c.1612	p.E538*	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ENSG00000246477	0	genome.wustl.edu	37	8	11177089	11177089	+	RNA	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11177089	11177089	T	G	SNP	ENSG00000246477	ENST00000498997	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
FCHO1	23149	genome.wustl.edu	37	19	17883272	17883272	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17883272	17883272	C	T	SNP	FCHO1	NM_015122	human	genbank	57_37b	+1	validated	nonsense	c.601	p.Q201*	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SAFF	-	no_errors	
FOXK1	221937	genome.wustl.edu	37	7	4796777	4796777	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4796777	4796777	T	G	SNP	FOXK1	NM_001037165	human	genbank	57_37b	+1	validated	silent	c.1203	p.G401	0.024	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors	
GP1BA	2811	genome.wustl.edu	37	17	4837651	4837651	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4837651	4837651	G	C	SNP	GP1BA	NM_000173	human	genbank	57_37b	+1	reviewed	missense	c.1713	p.R571S	0.281	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	-	no_errors	
GPR172A	79581	genome.wustl.edu	37	8	145584626	145584626	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145584626	145584626	A	G	SNP	GPR172A	NM_024531	human	genbank	57_37b	+1	validated	missense	c.1289	p.Y430C	0.999	NULL	HMMPfam_DUF1011	-	no_errors	
HIP1R	9026	genome.wustl.edu	37	12	123345688	123345688	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123345688	123345688	T	G	SNP	HIP1R	NM_003959	human	genbank	57_37b	+1	validated	missense	c.2901	p.D967E	1.000	HMMSmart_ILWEQ,HMMPfam_I_LWEQ	HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH,superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors	
KATNB1	10300	genome.wustl.edu	37	16	57786814	57786814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57786814	57786814	G	A	SNP	KATNB1	NM_005886	human	genbank	57_37b	+1	reviewed	missense	c.829	p.D277N	1.000	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
KLHL30	377007	genome.wustl.edu	37	2	239049614	239049614	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239049614	239049614	C	T	SNP	KLHL30	NM_198582	human	genbank	57_37b	+1	validated	silent	c.165	p.R55	0.612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LOC100288809	0	genome.wustl.edu	37	12	53201674	53201674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53201674	53201674	G	T	SNP	LOC100288809	XM_002343167	human	genbank	57_37b	+1	model	missense	c.437	p.W146L	0.000	NULL	NULL	-	no_errors	
LRRC8A	56262	genome.wustl.edu	37	9	131671515	131671515	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131671515	131671515	A	C	SNP	LRRC8A	NM_001127244	human	genbank	57_37b	+1	reviewed	missense	c.2072	p.D691A	1.000	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56178085	56178085	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178085	56178085	C	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.3058	p.Q1020*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56178466	56178467	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178466	56178467	-	T	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.3439_3440	p.T1148fs	1.000:0.998	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MTMR3	8897	genome.wustl.edu	37	22	30414019	30414019	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30414019	30414019	A	C	SNP	MTMR3	NM_021090	human	genbank	57_37b	+1	reviewed	missense	c.1778	p.Y593S	1.000	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
MYBBP1A	10514	genome.wustl.edu	37	17	4448552	4448552	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4448552	4448552	A	C	SNP	MYBBP1A	NM_001105538	human	genbank	57_37b	-1	validated	splice_site	c.2160+2	e16+2	0.709	-	-	-	no_errors	
NPHP4	261734	genome.wustl.edu	37	1	5964847	5964847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	5964847	5964847	C	T	SNP	NPHP4	NM_015102	human	genbank	57_37b	-1	reviewed	missense	c.1973	p.R658Q	0.001	NULL	NULL	-	no_errors	
OLFML2A	169611	genome.wustl.edu	37	9	127563854	127563854	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127563854	127563854	G	T	SNP	OLFML2A	NM_182487	human	genbank	57_37b	+1	validated	missense	c.831	p.K277N	1.000	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors	
PCNXL2	80003	genome.wustl.edu	37	1	233136233	233136233	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233136233	233136233	C	A	SNP	PCNXL2	NM_014801	human	genbank	57_37b	-1	provisional	nonsense	c.5146	p.E1716*	1.000	HMMPfam_Pecanex_C	PatternScan_DNAJ_1,HMMPfam_Pecanex_C	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PNMAL2	0	genome.wustl.edu	37	19	46998318	46998318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46998318	46998318	C	T	SNP	PNMAL2	NM_020709	human	genbank	57_37b	-1	validated	silent	c.405	p.T135	0.001	NULL	NULL	-	no_errors	
PTCD2	79810	genome.wustl.edu	37	5	71654216	71654216	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	71654216	71654216	A	C	SNP	PTCD2	NM_024754	human	genbank	57_37b	+1	validated	missense	c.1129	p.T377P	0.995	NULL	HMMPfam_PPR	-	no_errors	
RGS3	5998	genome.wustl.edu	37	9	116346360	116346360	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116346360	116346360	G	A	SNP	RGS3	NM_144488	human	genbank	57_37b	+1	reviewed	missense	c.2668	p.E890K	0.806	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_PH domain-like,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors	
RRBP1	6238	genome.wustl.edu	37	20	17640582	17640582	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17640582	17640582	T	G	SNP	RRBP1	ENST00000246043	human	ensembl	57_37b	-1	known	missense	c.571	p.T191P	0.000	NULL	HMMPfam_Rib_recp_KP_reg	-	no_errors	
SDHB	6390	genome.wustl.edu	37	1	17355201	17355201	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17355201	17355201	T	C	SNP	SDHB	NM_003000	human	genbank	57_37b	-1	reviewed	missense	c.317	p.N106S	0.998	superfamily_2Fe-2S ferredoxin-like	superfamily_2Fe-2S ferredoxin-like,PatternScan_2FE2S_FER_1,superfamily_alpha-helical ferredoxin,PatternScan_4FE4S_FER_1	-	no_errors	
SMARCA2	6595	genome.wustl.edu	37	9	2088587	2088587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2088587	2088587	G	A	SNP	SMARCA2	NM_003070	human	genbank	57_37b	+1	reviewed	missense	c.2857	p.E953K	1.000	HMMPfam_SNF2_N	HMMPfam_QLQ,HMMPfam_HSA,HMMSmart_SM00573,HMMPfam_BRK,HMMSmart_SM00592,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
SNORA48	652965	genome.wustl.edu	37	17	7478063	7478063	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7478063	7478063	G	C	SNP	SNORA48	NR_002918	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.001	-	-	-	no_errors	
SPATA1	64173	genome.wustl.edu	37	1	85018792	85018792	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85018792	85018792	C	T	SNP	SPATA1	NM_001081472	human	genbank	57_37b	+1	validated	silent	c.1365	p.L455	0.616	NULL	NULL	-	no_errors	
STAG2	10735	genome.wustl.edu	37	X	123211834	123211834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123211834	123211834	A	G	SNP	STAG2	NM_001042749	human	genbank	57_37b	+1	validated	missense	c.2701	p.K901E	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors	
THSD7B	80731	genome.wustl.edu	37	2	138000059	138000059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	138000059	138000059	G	A	SNP	THSD7B	NM_001080427	human	genbank	57_37b	+1	provisional	missense	c.2090	p.R697H	0.799	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
TMSB15A	11013	genome.wustl.edu	37	X	101769050	101769050	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101769050	101769050	T	G	SNP	TMSB15A	NM_021992	human	genbank	57_37b	-1	validated	missense	c.103	p.I35L	0.948	HMMPfam_Thymosin,HMMSmart_SM00152	HMMPfam_Thymosin,HMMSmart_SM00152,PatternScan_THYMOSIN_B4	-	no_errors	
TPTE	7179	genome.wustl.edu	37	21	10921971	10921971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	10921971	10921971	G	A	SNP	TPTE	NM_199261	human	genbank	57_37b	-1	validated	missense	c.1052	p.A351V	0.221	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
USP34	9736	genome.wustl.edu	37	2	61492669	61492669	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61492669	61492669	A	G	SNP	USP34	NM_014709	human	genbank	57_37b	-1	validated	missense	c.5641	p.Y1881H	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
XYLT2	64132	genome.wustl.edu	37	17	48433561	48433561	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48433561	48433561	T	C	SNP	XYLT2	NM_022167	human	genbank	57_37b	+1	reviewed	missense	c.1421	p.I474T	1.000	NULL	HMMPfam_Branch	-	no_errors	
ZSWIM2	151112	genome.wustl.edu	37	2	187697884	187697884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187697884	187697884	T	C	SNP	ZSWIM2	NM_182521	human	genbank	57_37b	-1	validated	missense	c.904	p.I302V	0.003	NULL	HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C3HC4	-	no_errors	
