stddata__2012_07_07 Redactions Report
Overview
Introduction

For TCGA data, redaction is the removal of cases from the data prior to publication or release. Redacted cases are generally rare, but cases must be redacted when the TSS/BCR subject link is incorrect ("unknown patient identity"), or in the case of genotype mismatch, completely wrong cancer, or completely wrong organ/tissue. Redaction occurs regardless of a case's analyte characterization or DCC data deposition status.

Rescission is the removal of samples from the list of redactions. This happens if the reason for redaction is eventually cleared up. For clarity, rescinded redactions do not appear in this report.

Summary

There were 43 redactions.

Results

Table 1.  Get Full Table

Barcode UUID Date Type Notes
TCGA-01-0629 (none) 09/02/2010 GBM [intgen.org]: Case was of non-ovarian origin
TCGA-01-0638 (none) 09/02/2010 OV [intgen.org]: Case was of non-ovarian origin
TCGA-02-0002 (none) 09/15/2010 GBM [intgen.org]: Genotype mismatch
TCGA-02-0117 (none) 09/15/2010 GBM [intgen.org]: Genotype mismatch
TCGA-02-2488 741c2eb3-db33-4a6c-9878-2587aa375134 10/27/2011 GBM Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-06-0748 c8f21beb-e3ca-4e5e-a386-a486776cfe88 10/27/2011 GBM Note: Scheduled for shipment in B8 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-08-0384 (none) 11/22/2010 GBM IGC new redactions as of 11/10/2010
TCGA-13-1479 (none) 09/02/2010 OV [intgen.org]: Case was of non-ovarian origin
TCGA-14-0784 fc52a226-9306-45d4-b608-4bdda831ad01 09/12/2011 GBM [intgen.org]: Genotype mismatch
TCGA-14-1036 f45a2391-4c79-4269-8cdd-12a914d6c4b5 10/27/2011 GBM Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data
TCGA-14-1824 270b9238-1567-4930-968a-a408b808ea1b 10/27/2011 GBM Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-24-0981 0c3ba4c0-d7a4-421a-af38-d5019ca45e06 10/28/2010 OV Duplicate Subject (with TCGA-04-1364)
TCGA-33-4579 1169b8c3-e5ae-47a8-91db-0ce62a5958e2 06/17/2011 LUSC per Kenna, 6/7/2011 redact case since it does not seem to be a true primary (no definitive diagnosis of lung primary squamous).
TCGA-35-3621 b3169af9-675d-4f3e-a806-1840f4fc0eff 09/14/2010 LUAD [intgen.org]: Genotype mismatch
TCGA-66-2746 (none) 09/02/2010 LUSC [intgen.org]: Genotype mismatch
TCGA-66-2747 (none) 09/02/2010 LUSC [intgen.org]: Genotype mismatch
TCGA-66-2750 (none) 09/02/2010 LUSC [intgen.org]: Genotype mismatch
TCGA-66-2751 (none) 09/02/2010 LUSC [intgen.org]: Genotype mismatch
TCGA-66-2752 (none) 09/02/2010 LUSC [intgen.org]: Genotype mismatch
TCGA-A7-A0DC cb9f5e50-f49d-4899-8895-9367afcc1015 12/14/2010 BRCA Redaction due to incorrect type of tumor being submitted.
TCGA-AN-A0FE e4321d99-ed3b-4fc8-b016-2ff47d93a064 10/28/2010 BRCA Identical subject to TCGA-AN-A0FG
TCGA-AN-A0FG 51d991f6-d998-420e-9357-48736c9ea0c1 10/28/2010 BRCA Identical subject to TCGA-AN-A0FE
TCGA-BH-A0B2 57a1604c-60b7-4b30-a75e-f70939532c5c 01/25/2011 BRCA Normal tissue identity mismatch from Jay Bowen/NWCH
TCGA-BR-4186 65834878-0e8d-4741-9e4c-2316105ad40d 03/20/2012 STAD NA
TCGA-BR-4196 c23e0eb6-e332-4a3b-9ffd-0d8f019f8ace 11/18/2011 STAD NA
TCGA-BR-4197 4a27cbb6-754f-4a8d-8606-71af35d97279 11/18/2011 STAD NA
TCGA-BR-4205 65f14f48-13d8-4791-9335-92bb1599eb20 06/17/2011 STAD NA
TCGA-BR-4260 4d26fcfe-4bed-4245-b30a-a95b48785fd9 11/18/2011 STAD NA
TCGA-BR-4263 826ae72b-aa6f-44ae-b683-83f6e8f708e6 11/18/2011 STAD NA
TCGA-BR-4264 c036069a-a217-433b-a5b7-f5826ddbd7fa 11/18/2011 STAD NA
TCGA-BR-4266 8d62ca4c-deca-46d3-8c97-c14ce34e1bf4 11/18/2011 STAD NA
TCGA-BR-4270 6d174bec-9574-42f1-b153-706d389aa36d 11/18/2011 STAD NA
TCGA-BR-4271 f9c581e5-7556-429f-81bd-373ede868f9c 11/18/2011 STAD NA
TCGA-BR-4272 2e333a4c-9f9c-4bac-8451-95f1d84715c1 11/18/2011 STAD NA
TCGA-BR-4273 7cb06aa4-a199-4076-85c7-e30dc6adccdc 11/18/2011 STAD NA
TCGA-BR-4274 684f9ddb-6820-4a46-a122-d4465c8ad3bd 11/18/2011 STAD NA
TCGA-BR-4276 cfe21d5f-c885-4907-b0ef-2420a91d8d30 11/18/2011 STAD NA
TCGA-BR-4282 f404c64a-8b6e-4799-9a24-0ce9f7afe3d9 06/17/2011 STAD NA
TCGA-BR-4283 c55eee70-2967-4754-aabd-534bada30a3a 03/20/2012 STAD Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data.
TCGA-BR-4285 649bbb1c-0997-4b69-bb17-c327c558fe7f 11/18/2011 STAD NA
TCGA-BR-4286 966eed09-6f55-45df-8e51-523442e85fa4 11/18/2011 STAD NA
TCGA-E2-A1IP 826d8224-55fe-48c7-a5fe-ad81ac1ebba3 06/15/2011 BRCA Tumor and normal do not match
TCGA-F4-6857 e2fca12c-1a5a-4ba7-9233-d31560fc43be 03/20/2012 COAD Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data.
Methods & Data

Redaction data was taken from the TCGA Data Portal using the query string:

https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?categoryId=CATEGORY_ID

for the following CATEGORY_ID values:

  • 1 = Tumor tissue origin incorrect

  • 2 = Tumor type incorrect

  • 3 = Genotype mismatch

  • 5 = Subject identity unknown

  • 27 = Duplicate case

  • 37 = Administrative Compliance

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