Broad GDAC Standard Data Status
stddata__2012_08_04 Run for Tumor Type: HNSC
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
HNSC
312
293
288
0
292
0
263
0
289
0
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline Dataset
Not Available
Available
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
0
1
0
2
Merge_Clinical
0
0
0
1
0
3
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
4
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
5
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
6
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
7
Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
8
Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
9
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
10
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
11
Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
12
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
1
0
0
0
0
13
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
1
0
0
0
0
14
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
1
0
0
0
0
15
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
16
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
1
0
0
0
0
17
Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
18
Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
19
Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
20
Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
21
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
22
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
23
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
24
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
25
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
26
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
27
Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
1
0
0
0
0
28
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
29
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
30
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
31
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
32
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
33
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
1
0
0
0
0
34
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
35
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
36
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
37
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
0
0
0
1
0
38
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
0
0
0
1
0
39
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
0
0
0
1
0
40
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
0
0
0
1
0
41
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
0
0
0
1
0
42
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
0
0
0
1
0
43
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
0
0
0
1
0
44
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
0
0
0
1
0
45
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
1
0
0
0
0
46
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
47
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
1
0
0
0
0
48
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
0
0
0
0
49
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
1
0
0
0
0
50
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
1
0
0
0
0
51
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
52
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
53
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
54
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
55
Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
56
Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
57
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
58
Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
59
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
60
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
61
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
62
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
63
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
64
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
65
Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
66
Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
67
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
68
Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
69
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
70
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
71
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
72
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
73
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
74
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
75
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
76
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
77
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
78
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
79
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
80
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
81
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
82
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
83
Mutation_Packager_Calls
1
0
0
0
0
84
Mutation_Packager_Coverage
1
0
0
0
0
85
RPPA_AnnotateWithGene
1
0
0
0
0
Total
65
0
0
20
0
This table generated on Mon Aug 20 10:53:36 2012