Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_08_04 stddata Run
| Tumor | BCR | Clinical | CN | LowP | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF
|
|
| BLCA | 126 | 68 | 88 | 0 | 78 | 0 | 56 | 0 | 88 | 0 | 28 |
| BRCA | 914 | 862 | 833 | 0 | 858 | 529 | 805 | 0 | 809 | 408 | 507 |
| CESC | 122 | 31 | 68 | 0 | 0 | 0 | 0 | 0 | 42 | 0 | 36 |
| COADREAD | 592 | 591 | 575 | 76 | 584 | 224 | 83 | 0 | 255 | 399 | 224 |
| DLBC | 27 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 598 | 565 | 563 | 0 | 287 | 542 | 0 | 491 | 0 | 214 | 276 |
| HNSC | 312 | 293 | 288 | 0 | 292 | 0 | 263 | 0 | 289 | 0 | 0 |
| KICH | 65 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| KIRC | 502 | 502 | 490 | 0 | 500 | 72 | 469 | 0 | 463 | 454 | 403 |
| KIRP | 135 | 95 | 75 | 0 | 117 | 16 | 63 | 0 | 43 | 0 | 0 |
| LAML | 202 | 200 | 0 | 0 | 192 | 0 | 179 | 0 | 187 | 0 | 199 |
| LGG | 181 | 161 | 144 | 0 | 140 | 27 | 47 | 0 | 67 | 0 | 0 |
| LIHC | 99 | 62 | 58 | 0 | 0 | 0 | 17 | 0 | 54 | 0 | 0 |
| LUAD | 439 | 292 | 303 | 0 | 347 | 32 | 250 | 0 | 100 | 237 | 229 |
| LUSC | 360 | 279 | 282 | 0 | 282 | 154 | 223 | 0 | 202 | 0 | 178 |
| OV | 592 | 580 | 563 | 0 | 550 | 567 | 297 | 563 | 454 | 412 | 316 |
| PAAD | 48 | 0 | 14 | 0 | 30 | 0 | 0 | 0 | 0 | 0 | 0 |
| PRAD | 174 | 127 | 100 | 0 | 153 | 0 | 53 | 0 | 81 | 0 | 83 |
| SARC | 29 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| SKCM | 273 | 129 | 252 | 0 | 240 | 0 | 212 | 0 | 240 | 0 | 0 |
| STAD | 226 | 159 | 132 | 0 | 133 | 0 | 57 | 0 | 151 | 0 | 133 |
| THCA | 353 | 193 | 228 | 0 | 230 | 0 | 158 | 0 | 187 | 0 | 0 |
| UCEC | 512 | 451 | 430 | 0 | 451 | 54 | 266 | 0 | 377 | 200 | 248 |
| PANCANCER | 6881 | 5640 | 5487 | 76 | 5464 | 2217 | 3498 | 1054 | 4089 | 2324 | 2860 |