Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_10_04 stddata Run
| Tumor | BCR | Clinical | CN | LowP | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF
|
|
| BLCA | 138 | 69 | 99 | 0 | 126 | 0 | 85 | 0 | 88 | 54 | 28 |
| BRCA | 914 | 866 | 874 | 0 | 888 | 529 | 805 | 0 | 821 | 408 | 507 |
| CESC | 122 | 32 | 102 | 0 | 0 | 0 | 0 | 0 | 42 | 0 | 36 |
| COAD | 423 | 423 | 413 | 69 | 421 | 155 | 11 | 0 | 378 | 269 | 155 |
| COADREAD | 592 | 591 | 575 | 104 | 584 | 224 | 83 | 0 | 521 | 399 | 224 |
| DLBC | 28 | 0 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 598 | 565 | 563 | 0 | 405 | 542 | 161 | 491 | 0 | 214 | 276 |
| HNSC | 328 | 315 | 294 | 96 | 310 | 0 | 286 | 0 | 309 | 212 | 0 |
| KICH | 66 | 0 | 65 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| KIRC | 502 | 502 | 493 | 0 | 500 | 72 | 469 | 0 | 480 | 454 | 403 |
| KIRP | 149 | 97 | 103 | 0 | 117 | 16 | 63 | 0 | 43 | 0 | 0 |
| LAML | 202 | 200 | 0 | 0 | 194 | 0 | 179 | 0 | 187 | 0 | 199 |
| LGG | 222 | 190 | 146 | 0 | 140 | 27 | 47 | 0 | 67 | 0 | 0 |
| LIHC | 99 | 62 | 97 | 0 | 98 | 0 | 17 | 0 | 54 | 0 | 0 |
| LUAD | 439 | 294 | 356 | 0 | 431 | 32 | 263 | 0 | 345 | 237 | 229 |
| LUSC | 376 | 309 | 343 | 0 | 282 | 154 | 223 | 0 | 202 | 195 | 178 |
| OV | 592 | 580 | 566 | 0 | 557 | 574 | 297 | 570 | 454 | 412 | 316 |
| PAAD | 57 | 0 | 48 | 0 | 40 | 0 | 0 | 0 | 0 | 0 | 0 |
| PANCAN8 | 4086 | 3864 | 3907 | 210 | 3667 | 2149 | 2115 | 1061 | 2855 | 2282 | 2152 |
| PRAD | 180 | 127 | 171 | 0 | 172 | 0 | 53 | 0 | 81 | 0 | 83 |
| READ | 169 | 168 | 162 | 35 | 163 | 69 | 72 | 0 | 143 | 130 | 69 |
| SARC | 29 | 0 | 29 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| SKCM | 273 | 138 | 253 | 101 | 253 | 0 | 247 | 0 | 240 | 164 | 0 |
| STAD | 255 | 159 | 161 | 0 | 133 | 0 | 57 | 0 | 151 | 0 | 133 |
| THCA | 412 | 197 | 330 | 94 | 353 | 0 | 223 | 0 | 331 | 224 | 0 |
| UCEC | 512 | 451 | 493 | 106 | 451 | 54 | 266 | 0 | 377 | 200 | 248 |
| Totals | 7085 | 5744 | 6178 | 501 | 6034 | 2224 | 3824 | 1061 | 4793 | 3173 | 2860 |