Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_10_18 stddata Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	138	89	99	0	126	0	85	0	88	54	28
BRCA	914	866	874	0	889	529	805	0	821	408	507
CESC	122	32	102	0	122	0	0	0	42	0	36
COAD	423	423	413	69	421	155	11	0	378	269	155
COADREAD	592	591	575	104	584	224	83	0	521	399	224
DLBC	28	0	17	0	17	0	0	0	0	0	0
GBM	598	565	563	0	411	542	161	491	0	214	276
HNSC	328	315	294	96	310	0	286	0	309	212	0
KICH	66	0	65	0	65	0	0	0	0	0	0
KIRC	502	502	493	0	500	72	469	0	480	454	403
KIRP	149	97	103	0	123	16	63	0	43	0	0
LAML	202	200	0	0	194	0	179	0	187	0	199
LGG	222	190	180	0	176	27	47	0	67	0	0
LIHC	99	62	97	0	98	0	17	0	54	0	0
LUAD	439	294	356	0	431	32	301	0	345	237	229
LUSC	376	309	343	0	359	154	223	0	202	195	178
OV	592	580	566	0	557	575	297	570	454	412	316
PAAD	57	0	48	0	40	0	0	0	0	0	0
PANCAN8	4086	3864	3907	210	3800	2150	2115	1061	2855	2282	2152
PRAD	180	127	171	0	172	0	53	0	81	0	83
READ	169	168	162	35	163	69	72	0	143	130	69
SARC	29	0	29	0	29	0	0	0	0	0	0
SKCM	273	138	253	101	253	0	247	0	240	164	0
STAD	255	159	161	0	162	0	57	0	151	0	133
THCA	412	218	330	94	353	0	223	0	331	224	323
UCEC	512	451	493	106	500	54	266	0	377	200	248
Totals	7085	5785	6212	501	6471	2225	3862	1061	4793	3173	3183