Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_10_20 stddata Run
| Tumor | BCR | Clinical | CN | LowP | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF
|
|
| BLCA | 153 | 102 | 99 | 0 | 126 | 0 | 96 | 0 | 124 | 54 | 28 |
| BRCA | 914 | 866 | 874 | 0 | 889 | 529 | 805 | 0 | 868 | 408 | 507 |
| CESC | 122 | 32 | 102 | 0 | 122 | 0 | 0 | 0 | 122 | 0 | 36 |
| COAD | 423 | 423 | 413 | 69 | 421 | 155 | 192 | 0 | 407 | 269 | 155 |
| COADREAD | 592 | 591 | 575 | 104 | 584 | 224 | 264 | 0 | 550 | 399 | 224 |
| DLBC | 28 | 0 | 17 | 0 | 17 | 0 | 0 | 0 | 16 | 0 | 0 |
| GBM | 598 | 565 | 563 | 0 | 411 | 542 | 161 | 491 | 0 | 214 | 276 |
| HNSC | 328 | 315 | 294 | 96 | 310 | 0 | 286 | 0 | 309 | 212 | 0 |
| KICH | 66 | 0 | 65 | 0 | 65 | 0 | 0 | 0 | 0 | 0 | 0 |
| KIRC | 502 | 502 | 493 | 0 | 500 | 72 | 469 | 0 | 480 | 454 | 403 |
| KIRP | 149 | 97 | 103 | 0 | 123 | 16 | 63 | 0 | 103 | 0 | 0 |
| LAML | 202 | 200 | 0 | 0 | 194 | 0 | 179 | 0 | 187 | 0 | 199 |
| LGG | 222 | 190 | 180 | 0 | 176 | 27 | 47 | 0 | 180 | 0 | 0 |
| LIHC | 99 | 62 | 97 | 0 | 98 | 0 | 17 | 0 | 96 | 0 | 0 |
| LUAD | 439 | 294 | 356 | 0 | 431 | 32 | 301 | 0 | 365 | 237 | 229 |
| LUSC | 376 | 309 | 343 | 0 | 359 | 154 | 223 | 0 | 332 | 195 | 178 |
| OV | 592 | 580 | 566 | 0 | 557 | 575 | 297 | 570 | 454 | 412 | 316 |
| PAAD | 57 | 0 | 48 | 0 | 40 | 0 | 0 | 0 | 34 | 0 | 0 |
| PANCAN8 | 4086 | 3864 | 3907 | 210 | 3800 | 2150 | 2515 | 1061 | 3169 | 2282 | 2152 |
| PRAD | 180 | 127 | 171 | 0 | 172 | 0 | 53 | 0 | 170 | 0 | 83 |
| READ | 169 | 168 | 162 | 35 | 163 | 69 | 72 | 0 | 143 | 130 | 69 |
| SARC | 29 | 0 | 29 | 0 | 29 | 0 | 0 | 0 | 29 | 0 | 0 |
| SKCM | 273 | 138 | 253 | 101 | 253 | 0 | 247 | 0 | 240 | 164 | 0 |
| STAD | 255 | 159 | 161 | 0 | 162 | 0 | 57 | 0 | 151 | 0 | 133 |
| THCA | 435 | 218 | 330 | 94 | 353 | 0 | 254 | 0 | 349 | 224 | 323 |
| UCEC | 512 | 451 | 493 | 106 | 500 | 54 | 333 | 0 | 485 | 200 | 248 |
| Totals | 7123 | 5798 | 6212 | 501 | 6471 | 2225 | 4152 | 1061 | 5644 | 3173 | 3183 |