Broad GDAC stddata__2012_10_24 Run Status : UCEC

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
UCEC	512	451	493	106	500	54	333	0	485	200	248

Note that the links below require Broad internal Firehose login credentials.

	Pipeline Dataset	Not Available	Successful
1	Clinical_Pick_Tier1	0	1
2	Merge_Clinical	0	1
3	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0
4	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0
5	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0
6	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0
7	Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0
8	Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0
9	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0
10	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	1	0
11	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	1
12	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1	0
13	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1	0
14	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1	0
15	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0
16	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1
17	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1
18	Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0
19	Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0
20	Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0
21	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0
22	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0
23	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1
24	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1
25	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1
26	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1
27	Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	1
28	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0
29	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0
30	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0
31	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	1
32	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	1
33	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	1
34	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0
35	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0
36	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0
37	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0
38	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0
39	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0
40	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	1
41	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	1
42	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	1
43	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	1
44	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	1
45	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0
46	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	1
47	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0
48	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0
49	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0
50	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0
51	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	1
52	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	1
53	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	1
54	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	1
55	Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0
56	Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0
57	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0
58	Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0
59	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0
60	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0
61	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0
62	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0
63	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0
64	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0
65	Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0
66	Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0
67	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0
68	Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0
69	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0
70	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0
71	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0
72	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0
73	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0
74	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0
75	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0
76	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0
77	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0
78	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0
79	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	1
80	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	1
81	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0
82	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0
83	Mutation_Packager_Calls	0	1
84	Mutation_Packager_Coverage	0	1
85	RPPA_AnnotateWithGene	0	1
86	Normal-Clinical_Pick_Tier1	1	0
87	Normal-Merge_Clinical	1	0
88	Normal-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0
89	Normal-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0
90	Normal-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0
91	Normal-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0
92	Normal-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0
93	Normal-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0
94	Normal-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0
95	Normal-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	1	0
96	Normal-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	1
97	Normal-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1	0
98	Normal-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1	0
99	Normal-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1	0
100	Normal-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0
101	Normal-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1
102	Normal-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1
103	Normal-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0
104	Normal-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0
105	Normal-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0
106	Normal-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0
107	Normal-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0
108	Normal-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1
109	Normal-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1
110	Normal-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1
111	Normal-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1
112	Normal-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	1	0
113	Normal-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0
114	Normal-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0
115	Normal-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0
116	Normal-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	1
117	Normal-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	1
118	Normal-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	1
119	Normal-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0
120	Normal-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0
121	Normal-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0
122	Normal-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0
123	Normal-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0
124	Normal-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0
125	Normal-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	1
126	Normal-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	1
127	Normal-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	1
128	Normal-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	1
129	Normal-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	1
130	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0
131	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	1
132	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0
133	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0
134	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0
135	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0
136	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	1
137	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	1
138	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	1
139	Normal-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	1
140	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0
141	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0
142	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0
143	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0
144	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0
145	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0
146	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0
147	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0
148	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0
149	Normal-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0
150	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0
151	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0
152	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0
153	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0
154	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0
155	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0
156	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0
157	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0
158	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0
159	Normal-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0
160	Normal-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0
161	Normal-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0
162	Normal-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0
163	Normal-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0
164	Normal-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0
165	Normal-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0
166	Normal-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0
167	Normal-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0
168	Normal-Mutation_Packager_Calls	1	0
169	Normal-Mutation_Packager_Coverage	1	0
170	Normal-RPPA_AnnotateWithGene	1	0
	Total	122	48

This table generated on Wed Dec 5 16:20:48 2012

Broad GDAC Standard Data Status stddata__2012_10_24 Run for Tumor Type: UCEC

Broad GDAC Standard Data Status
stddata__2012_10_24 Run for Tumor Type: UCEC