Broad GDAC Standard Data Status
stddata__2012_11_14 Run for Tumor Type: BRCA
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
BRCA
914
866
874
0
889
529
805
0
868
408
507
Note that the links below require Broad internal Firehose login credentials.
Pipeline Dataset
Not Available
Available
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
0
1
0
2
Merge_Clinical
0
0
0
1
0
3
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
4
Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
5
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
6
Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
7
Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
8
Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
9
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
10
Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
11
Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
12
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
1
0
0
0
0
13
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
1
0
0
0
0
14
Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
1
0
0
0
0
15
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
16
Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
17
Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
18
Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
19
Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
20
Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
21
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
22
Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
23
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
24
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
25
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
26
Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
27
Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
0
0
0
1
0
28
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
29
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
30
Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
31
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
32
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
33
Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
1
0
0
0
0
34
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
35
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
36
Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
37
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
0
0
0
1
0
38
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
0
0
0
1
0
39
Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
0
0
0
1
0
40
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
0
0
0
1
0
41
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
0
0
0
1
0
42
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
0
0
0
1
0
43
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
0
0
0
1
0
44
Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
0
0
0
1
0
45
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
1
0
0
0
0
46
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
47
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
1
0
0
0
0
48
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
0
0
0
0
49
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
1
0
0
0
0
50
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
1
0
0
0
0
51
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
52
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
53
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
54
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
55
Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
56
Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
57
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
58
Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
59
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
60
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
61
Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
62
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
63
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
64
Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
65
Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
66
Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
0
0
0
67
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
68
Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
69
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
70
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
71
Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
72
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
73
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
74
Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
75
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
76
Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
77
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
78
Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
79
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
0
0
0
1
0
80
Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
0
0
0
1
0
81
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
82
Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
83
Mutation_Packager_Calls
0
0
0
1
0
84
Mutation_Packager_Coverage
0
0
0
1
0
85
RPPA_AnnotateWithGene
0
0
0
1
0
86
Normals-Clinical_Pick_Tier1
1
0
0
0
0
87
Normals-Merge_Clinical
1
0
0
0
0
88
Normals-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
89
Normals-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
90
Normals-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
91
Normals-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
92
Normals-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data
1
0
0
0
0
93
Normals-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
1
0
0
0
0
94
Normals-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data
1
0
0
0
0
95
Normals-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
96
Normals-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg
1
0
0
0
0
97
Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data
1
0
0
0
0
98
Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data
1
0
0
0
0
99
Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
1
0
0
0
0
100
Normals-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
101
Normals-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
102
Normals-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
0
0
0
1
0
103
Normals-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data
1
0
0
0
0
104
Normals-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
105
Normals-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
106
Normals-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data
1
0
0
0
0
107
Normals-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
1
0
0
0
0
108
Normals-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
109
Normals-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
110
Normals-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
0
0
0
1
0
111
Normals-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
0
0
0
1
0
112
Normals-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
1
0
0
0
0
113
Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
114
Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
115
Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
116
Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
1
0
0
0
0
117
Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
1
0
0
0
0
118
Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
1
0
0
0
0
119
Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
1
0
0
0
0
120
Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
1
0
0
0
0
121
Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
1
0
0
0
0
122
Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
0
0
0
1
0
123
Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
0
0
0
1
0
124
Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
0
0
0
1
0
125
Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
0
0
0
1
0
126
Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
0
0
0
1
0
127
Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
0
0
0
1
0
128
Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
0
0
0
1
0
129
Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
0
0
0
1
0
130
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data
1
0
0
0
0
131
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
132
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data
1
0
0
0
0
133
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data
1
0
0
0
0
134
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data
1
0
0
0
0
135
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data
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0
0
0
0
136
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
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0
0
1
0
137
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
138
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
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0
0
1
0
139
Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
140
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
141
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data
1
0
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0
0
142
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
0
0
0
0
143
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data
1
0
0
0
0
144
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data
1
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0
0
0
145
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
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0
0
146
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
147
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
148
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
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0
149
Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
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0
150
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data
1
0
0
0
0
151
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data
1
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0
0
152
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data
1
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0
0
153
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data
1
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0
0
0
154
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data
1
0
0
0
0
155
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data
1
0
0
0
0
156
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data
1
0
0
0
0
157
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
158
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
159
Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
160
Normals-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
161
Normals-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
162
Normals-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
163
Normals-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
164
Normals-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
0
0
0
1
0
165
Normals-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
0
0
0
1
0
166
Normals-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
167
Normals-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
168
Normals-Mutation_Packager_Calls
1
0
0
0
0
169
Normals-Mutation_Packager_Coverage
1
0
0
0
0
170
Normals-RPPA_AnnotateWithGene
1
0
0
0
0
Total
122
0
0
48
0
This table generated on Sun Nov 25 22:15:54 2012