Broad GDAC Standard Data Status
stddata__2012_11_14 Run for Tumor Type: BRCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
BRCA91486687408895298050868408507

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2Merge_Clinical00010
3Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
4Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
5Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
6Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
7Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
8Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
9Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
10Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
11Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
12Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
13Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
14Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
15Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
16Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
17Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
18Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
19Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
20Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
21Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
22Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
23Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
24Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
25Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
26Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
27Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
28Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
29Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
30Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
31Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
32Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
33Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
34Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
35Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
36Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
37Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data00010
38Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data00010
39Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data00010
40Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
41Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
42Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
43Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
44Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
45Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
46Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
47Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
48Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
49Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
50Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
51Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
52Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
53Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
54Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
55Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
56Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
57Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
58Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
59Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
60Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
61Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
62Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
63Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
64Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
65Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
66Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
67Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
68Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
69Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
70Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
71Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
72Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
73Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
74Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
75Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
76Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
77Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
78Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
79Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data00010
80Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data00010
81Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
82Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
83Mutation_Packager_Calls00010
84Mutation_Packager_Coverage00010
85RPPA_AnnotateWithGene00010
86Normals-Clinical_Pick_Tier110000
87Normals-Merge_Clinical10000
88Normals-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
89Normals-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
90Normals-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
91Normals-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
92Normals-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
93Normals-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
94Normals-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
95Normals-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
96Normals-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
97Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
98Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
99Normals-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
100Normals-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
101Normals-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
102Normals-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
103Normals-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
104Normals-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
105Normals-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
106Normals-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
107Normals-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
108Normals-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
109Normals-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
110Normals-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
111Normals-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
112Normals-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
113Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
114Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
115Normals-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
116Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
117Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
118Normals-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
119Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
120Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
121Normals-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
122Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data00010
123Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data00010
124Normals-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data00010
125Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
126Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
127Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
128Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
129Normals-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
130Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
131Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
132Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
133Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
134Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
135Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
136Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
137Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
138Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
139Normals-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
140Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
141Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
142Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
143Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
144Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
145Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
146Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
147Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
148Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
149Normals-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
150Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
151Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
152Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
153Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
154Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
155Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
156Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
157Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
158Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
159Normals-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
160Normals-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
161Normals-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
162Normals-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
163Normals-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
164Normals-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data00010
165Normals-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data00010
166Normals-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
167Normals-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
168Normals-Mutation_Packager_Calls10000
169Normals-Mutation_Packager_Coverage10000
170Normals-RPPA_AnnotateWithGene10000
Total12200480

This table generated on Sun Nov 25 22:15:54 2012