Broad GDAC Standard Data Status
stddata__2012_12_06 Run for Tumor Type: LAML

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
LAML20220000194017901870199

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
5CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
6CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
7CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
8Merge_Clinical00010
9Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
10Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
11Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
12Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
13Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
18Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
19Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
20Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
21Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
22Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
23Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
24Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
25Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
26Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
27Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
28Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
29Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
30Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
31Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
32Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
33Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
34Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
35Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
36Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
37Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
38Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
39Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
40Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
41Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
42Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
43Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
44Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
45Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
46Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
47Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
48Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
49Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
50Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
51Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
52Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed10000
53Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
54Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
55Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
56Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
57Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg10000
58Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg10000
59Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg10000
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg10000
61Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
62Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
63Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
64Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
65Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
66Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
67Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
68Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
69Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
70Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
71Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
72Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
73Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
74Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
75Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
76Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
77Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
78Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
79Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
81Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
82Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
83Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
84Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
85Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
86Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
87Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
88Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
89Mutation_Packager_Calls00010
90Mutation_Packager_Coverage00010
91RPPA_AnnotateWithGene10000
92ALL-Clinical_Pick_Tier100010
93ALL-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
94ALL-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
95ALL-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
96ALL-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
97ALL-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
98ALL-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
99ALL-Merge_Clinical00010
100ALL-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
101ALL-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
102ALL-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
103ALL-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
104ALL-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
105ALL-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
106ALL-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
107ALL-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
108ALL-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
109ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
110ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
111ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
112ALL-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
113ALL-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
114ALL-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
115ALL-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
116ALL-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
117ALL-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
118ALL-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
119ALL-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
120ALL-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
121ALL-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
122ALL-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
123ALL-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
124ALL-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
125ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
126ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
127ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
128ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
129ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
130ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
131ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
132ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
133ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
134ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
135ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
136ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
137ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
138ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
139ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
140ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
141ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
142ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
143ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed10000
144ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
145ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
146ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
147ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
148ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg10000
149ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg10000
150ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg10000
151ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg10000
152ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
153ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
154ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
155ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
156ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
157ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
158ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
159ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
160ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
161ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
162ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
163ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
164ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
165ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
166ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
167ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
168ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
169ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
170ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
171ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
172ALL-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
173ALL-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
174ALL-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
175ALL-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
176ALL-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
177ALL-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
178ALL-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
179ALL-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
180ALL-Mutation_Packager_Calls00010
181ALL-Mutation_Packager_Coverage00010
182ALL-RPPA_AnnotateWithGene10000
Total16000220

This table generated on Thu Dec 20 15:26:54 2012