Broad GDAC Standard Data Status
stddata__2012_12_06 Run for Tumor Type: SKCM

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
SKCM273138273101253024702401640

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
5CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
6CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
7CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
8Merge_Clinical00010
9Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
10Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
11Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
12Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
13Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
18Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
19Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
20Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
21Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
22Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
23Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
24Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
25Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
26Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
27Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
28Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
29Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
30Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
31Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
32Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
33Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
34Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
35Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
36Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
37Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
38Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
39Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
40Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
41Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
42Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
43Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
44Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
45Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
46Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
47Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
48Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
49Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
50Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
51Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
52Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
53Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
54Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
55Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
56Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
57Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
58Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
59Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
61Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
62Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
63Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
64Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
65Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
66Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
67Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
68Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
69Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
70Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
71Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
72Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
73Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
74Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
75Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
76Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
77Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
78Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
79Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
81Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
82Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
83Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
84Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
85Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
86Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
87Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
88Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
89Mutation_Packager_Calls10000
90Mutation_Packager_Coverage10000
91RPPA_AnnotateWithGene00010
92TAM-Clinical_Pick_Tier110000
93TAM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
94TAM-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
95TAM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
96TAM-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
97TAM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
98TAM-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
99TAM-Merge_Clinical10000
100TAM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
101TAM-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
102TAM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
103TAM-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
104TAM-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
105TAM-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
106TAM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
107TAM-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
108TAM-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
109TAM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
110TAM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
111TAM-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
112TAM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
113TAM-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
114TAM-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
115TAM-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
116TAM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
117TAM-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
118TAM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
119TAM-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
120TAM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
121TAM-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
122TAM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
123TAM-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
124TAM-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
125TAM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
126TAM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
127TAM-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
128TAM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
129TAM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
130TAM-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
131TAM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
132TAM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
133TAM-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
134TAM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
135TAM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
136TAM-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
137TAM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
138TAM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
139TAM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
140TAM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
141TAM-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
142TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
143TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed10000
144TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
145TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
146TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
147TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
148TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg10000
149TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg10000
150TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg10000
151TAM-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg10000
152TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
153TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
154TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
155TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
156TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
157TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
158TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
159TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
160TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
161TAM-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
162TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
163TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
164TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
165TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
166TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
167TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
168TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
169TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
170TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
171TAM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
172TAM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
173TAM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
174TAM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
175TAM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
176TAM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
177TAM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
178TAM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
179TAM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
180TAM-Mutation_Packager_Calls10000
181TAM-Mutation_Packager_Coverage10000
182TAM-RPPA_AnnotateWithGene00010
183NORMALS-Clinical_Pick_Tier110000
184NORMALS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
185NORMALS-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
186NORMALS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
187NORMALS-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
188NORMALS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
189NORMALS-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
190NORMALS-Merge_Clinical10000
191NORMALS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
192NORMALS-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
193NORMALS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
194NORMALS-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
195NORMALS-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
196NORMALS-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
197NORMALS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
198NORMALS-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
199NORMALS-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
200NORMALS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
201NORMALS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
202NORMALS-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
203NORMALS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
204NORMALS-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
205NORMALS-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
206NORMALS-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
207NORMALS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
208NORMALS-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
209NORMALS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
210NORMALS-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
211NORMALS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
212NORMALS-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
213NORMALS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
214NORMALS-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
215NORMALS-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
216NORMALS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
217NORMALS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
218NORMALS-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
219NORMALS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
220NORMALS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
221NORMALS-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
222NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
223NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
224NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
225NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
226NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
227NORMALS-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
228NORMALS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
229NORMALS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
230NORMALS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
231NORMALS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
232NORMALS-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
233NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
234NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
235NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
236NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
237NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
238NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
239NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
240NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
241NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
242NORMALS-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
243NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
244NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
245NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
246NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
247NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
248NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
249NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
250NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
251NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
252NORMALS-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
253NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
254NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
255NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
256NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
257NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
258NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
259NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
260NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
261NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
262NORMALS-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
263NORMALS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
264NORMALS-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
265NORMALS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
266NORMALS-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
267NORMALS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
268NORMALS-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
269NORMALS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
270NORMALS-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
271NORMALS-Mutation_Packager_Calls10000
272NORMALS-Mutation_Packager_Coverage10000
273NORMALS-RPPA_AnnotateWithGene10000
274ALL-Clinical_Pick_Tier100010
275ALL-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
276ALL-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
277ALL-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
278ALL-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
279ALL-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
280ALL-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
281ALL-Merge_Clinical00010
282ALL-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
283ALL-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
284ALL-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
285ALL-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
286ALL-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
287ALL-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
288ALL-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
289ALL-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
290ALL-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
291ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
292ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
293ALL-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
294ALL-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
295ALL-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
296ALL-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
297ALL-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
298ALL-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
299ALL-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
300ALL-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
301ALL-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
302ALL-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
303ALL-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
304ALL-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
305ALL-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
306ALL-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
307ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
308ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
309ALL-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
310ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
311ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
312ALL-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
313ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
314ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
315ALL-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
316ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
317ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
318ALL-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
319ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
320ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
321ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
322ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
323ALL-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
324ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
325ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
326ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
327ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
328ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
329ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
330ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
331ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
332ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
333ALL-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
334ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
335ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
336ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
337ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
338ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
339ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
340ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
341ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
342ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
343ALL-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
344ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
345ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
346ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
347ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
348ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
349ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
350ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
351ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
352ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
353ALL-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
354ALL-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
355ALL-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
356ALL-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
357ALL-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
358ALL-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
359ALL-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
360ALL-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
361ALL-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
362ALL-Mutation_Packager_Calls10000
363ALL-Mutation_Packager_Coverage10000
364ALL-RPPA_AnnotateWithGene00010
Total32000440

This table generated on Thu Dec 20 15:26:59 2012