Broad GDAC Standard Data Status
stddata__2013_01_16 Run for Tumor Type: SARC

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
SARC520290290002900

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier110000
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_mRNAseq_exp_RPKM_log2_NB10000
5CreateLoadfile_mRNAseq_exp_RPKM_log2_NT10000
6CreateLoadfile_mRNAseq_exp_RSEM_log2_NB10000
7CreateLoadfile_mRNAseq_exp_RSEM_log2_NT10000
8CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
9CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
10CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
11CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
12Merge_Clinical10000
13Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
18Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
19Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
20Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
21Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
22Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
23Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
24Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
25Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
26Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
27Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
28Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
29Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
30Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
31Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
32Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
33Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
34Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
35Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
36Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
37Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
38Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
39Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
40Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
41Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
42Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
43Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
44Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
45Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
46Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
47Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
48Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
49Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
50Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
51Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
52Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
53Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
54Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
55Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
56Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
57Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
58Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
59Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
61Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
62Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
63Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
64Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
65Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
66Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
67Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
68Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
69Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
70Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
71Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
72Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
73Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
74Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
75Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
76Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
77Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
78Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
79Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
81Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
82Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
83Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
84Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
85Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
86Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
87Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
88Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
89Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
90Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
91Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
92Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
93Methylation_Preprocess00010
94miRseq_Preprocess00010
95miR_Preprocess10000
96mRNAseq_Preprocess10000
97mRNA_Preprocess_Median10000
98Mutation_Packager_Calls10000
99Mutation_Packager_Coverage10000
100RPPA_AnnotateWithGene10000
101TR-Clinical_Pick_Tier110000
102TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
103TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
104TR-CreateLoadfile_mRNAseq_exp_RPKM_log2_NB10000
105TR-CreateLoadfile_mRNAseq_exp_RPKM_log2_NT10000
106TR-CreateLoadfile_mRNAseq_exp_RSEM_log2_NB10000
107TR-CreateLoadfile_mRNAseq_exp_RSEM_log2_NT10000
108TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
109TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
110TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
111TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
112TR-Merge_Clinical10000
113TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
114TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
115TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
116TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
117TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
118TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
119TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
120TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
121TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
122TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
123TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
124TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
125TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
126TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
127TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
128TR-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
129TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
130TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
131TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
132TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
133TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
134TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
135TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
136TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
137TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
138TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
139TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
140TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
141TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
142TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
143TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
144TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
145TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
146TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
147TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
148TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
149TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
150TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
151TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
152TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
153TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
154TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
155TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
156TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
157TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
158TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
159TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
160TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
161TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
162TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
163TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
164TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
165TR-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
166TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
167TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
168TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
169TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
170TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
171TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
172TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
173TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
174TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
175TR-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
176TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
177TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
178TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
179TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
180TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
181TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
182TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
183TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
184TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
185TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
186TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
187TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
188TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
189TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
190TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
191TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
192TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
193TR-Methylation_Preprocess00010
194TR-miRseq_Preprocess00010
195TR-miR_Preprocess10000
196TR-mRNAseq_Preprocess10000
197TR-mRNA_Preprocess_Median10000
198TR-Mutation_Packager_Calls10000
199TR-Mutation_Packager_Coverage10000
200TR-RPPA_AnnotateWithGene10000
201TP-Clinical_Pick_Tier110000
202TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
203TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
204TP-CreateLoadfile_mRNAseq_exp_RPKM_log2_NB10000
205TP-CreateLoadfile_mRNAseq_exp_RPKM_log2_NT10000
206TP-CreateLoadfile_mRNAseq_exp_RSEM_log2_NB10000
207TP-CreateLoadfile_mRNAseq_exp_RSEM_log2_NT10000
208TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
209TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
210TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
211TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
212TP-Merge_Clinical10000
213TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
214TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
215TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
216TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
217TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
218TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
219TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
220TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
221TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
222TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
223TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
224TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
225TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
226TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
227TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
228TP-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
229TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
230TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
231TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
232TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
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291TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
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294TP-miRseq_Preprocess00010
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299TP-Mutation_Packager_Coverage10000
300TP-RPPA_AnnotateWithGene10000
301NT-Clinical_Pick_Tier110000
302NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
303NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
304NT-CreateLoadfile_mRNAseq_exp_RPKM_log2_NB10000
305NT-CreateLoadfile_mRNAseq_exp_RPKM_log2_NT10000
306NT-CreateLoadfile_mRNAseq_exp_RSEM_log2_NB10000
307NT-CreateLoadfile_mRNAseq_exp_RSEM_log2_NT10000
308NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
309NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
310NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
311NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
312NT-Merge_Clinical10000
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314NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
315NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
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328NT-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
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354NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
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356NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
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358NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
359NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
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362NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
363NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
364NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
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366NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
367NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
368NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
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370NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
371NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
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373NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
374NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
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378NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
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380NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
381NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
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387NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
388NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
389NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
390NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
391NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
392NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
393NT-Methylation_Preprocess10000
394NT-miRseq_Preprocess10000
395NT-miR_Preprocess10000
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397NT-mRNA_Preprocess_Median10000
398NT-Mutation_Packager_Calls10000
399NT-Mutation_Packager_Coverage10000
400NT-RPPA_AnnotateWithGene10000
401NB-Clinical_Pick_Tier110000
402NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
403NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
404NB-CreateLoadfile_mRNAseq_exp_RPKM_log2_NB10000
405NB-CreateLoadfile_mRNAseq_exp_RPKM_log2_NT10000
406NB-CreateLoadfile_mRNAseq_exp_RSEM_log2_NB10000
407NB-CreateLoadfile_mRNAseq_exp_RSEM_log2_NT10000
408NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
409NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
410NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
411NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
412NB-Merge_Clinical10000
413NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
414NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
415NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
416NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
417NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
418NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
419NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
420NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
421NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
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423NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
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427NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
428NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
429NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
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436NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
437NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
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439NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
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443NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
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445NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
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454NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
455NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
456NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
457NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
458NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
459NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
460NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
461NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
462NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
463NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
464NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
465NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
466NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
467NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
468NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
469NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
470NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
471NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
472NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
473NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
474NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
475NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
476NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
477NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
478NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
479NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
480NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
481NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
482NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
483NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
484NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
485NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
486NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
487NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
488NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
489NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
490NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
491NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
492NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
493NB-Methylation_Preprocess10000
494NB-miRseq_Preprocess10000
495NB-miR_Preprocess10000
496NB-mRNAseq_Preprocess10000
497NB-mRNA_Preprocess_Median10000
498NB-Mutation_Packager_Calls10000
499NB-Mutation_Packager_Coverage10000
500NB-RPPA_AnnotateWithGene10000
Total46000400

This table generated on Fri Jan 25 10:14:40 2013