Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2013_01_16 stddata Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	153	117	137	100	153	0	96	0	124	54	28
BRCA	929	866	899	0	888	527	841	0	868	408	507
CESC	134	32	114	0	122	0	97	0	122	0	36
COAD	423	423	413	69	420	155	192	0	407	269	155
COADREAD	592	591	575	104	582	224	264	0	550	399	224
DLBC	28	0	18	0	17	0	0	0	16	0	0
ESCA	20	0	0	0	0	0	0	0	0	0	0
GBM	598	565	563	0	405	542	161	491	0	214	291
HNSC	358	315	322	96	310	0	303	0	309	212	306
KICH	66	0	66	0	65	0	65	0	0	0	0
KIRC	502	502	493	0	500	72	480	0	480	454	293
KIRP	159	103	103	0	103	16	76	0	103	0	100
LAML	202	200	0	0	194	0	179	0	187	0	199
LGG	222	208	180	0	176	27	110	0	180	0	170
LIHC	99	62	97	0	98	0	17	0	96	0	0
LUAD	508	333	403	0	430	32	353	0	365	237	229
LUSC	399	327	358	0	359	154	223	0	332	195	178
OV	592	580	566	0	584	574	297	570	454	412	316
PAAD	57	0	48	0	49	0	31	0	34	0	34
PANCAN12	5345	4847	4809	406	4905	2179	3351	1061	4154	2785	2819
PANCAN18	7012	5855	6180	601	6238	2222	4321	1061	5330	3173	3864
PRAD	190	148	171	0	172	0	140	0	170	0	83
READ	169	168	162	35	162	69	72	0	143	130	69
SARC	52	0	29	0	29	0	0	0	29	0	0
SKCM	288	169	273	101	253	0	265	0	240	164	253
STAD	308	162	237	0	194	0	43	0	134	0	116
THCA	500	218	407	94	435	0	379	0	349	224	323
UCEC	512	451	493	106	500	54	370	0	485	200	248
Totals	7468	5949	6552	601	6618	2222	4790	1061	5627	3173	3934