Broad GDAC stddata__2013_02_03 Run Status : PANCAN12

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCAN12	5345	4853	5021	423	4905	2179	3415	1061	4264	2785	2819

Note that the links below require Broad internal Firehose login credentials.

	Pipeline Dataset	Not Available	Successful	Unsuccessful
1	Clinical_Pick_Tier1	0	1	0
2	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
3	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
4	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
5	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
6	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
7	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
8	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
9	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
10	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
11	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
12	Merge_Clinical	0	1	0
13	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
14	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	1	0
15	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
16	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
17	Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
18	Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	0	1	0
19	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
20	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
21	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
22	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	1	0
23	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	1	0
24	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	0	1
25	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
26	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1	0
27	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1	0
28	Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
29	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	0	1
30	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1	0
31	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	0	1
32	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1	0
33	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
34	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	1	0
35	Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
36	Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	1	0
37	Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	0	1
38	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	1	0
39	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	1	0
40	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	1	0
41	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	1	0
42	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	1	0
43	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	1	0
44	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	1	0
45	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	1	0
46	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	1	0
47	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	1	0
48	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	1	0
49	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	1	0
50	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	1	0
51	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	1	0
52	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	0	1	0
53	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	0	1	0
54	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	1	0
55	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
56	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	1	0
57	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
58	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
59	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
60	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
61	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	1	0
62	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	1	0
63	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	1	0
64	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	1	0
65	Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
66	Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
67	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
68	Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
69	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
70	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
71	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
72	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	1	0
73	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	1	0
74	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	1	0
75	Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
76	Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
77	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
78	Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
79	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
80	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
81	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
82	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	0	1	0
83	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	1	0
84	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	0	1	0
85	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	1	0
86	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	1	0
87	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	1	0
88	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	1	0
89	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	1	0
90	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	1	0
91	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	0	1	0
92	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	0	1	0
93	mRNAseq_Preprocess	0	0	1
94	Mutation_Packager_Calls	0	1	0
95	Mutation_Packager_Coverage	0	1	0
96	RPPA_AnnotateWithGene	1	0	0
97	TR-Clinical_Pick_Tier1	1	0	0
98	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
99	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
100	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
101	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
102	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
103	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
104	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
105	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
106	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
107	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
108	TR-Merge_Clinical	1	0	0
109	TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
110	TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	1	0
111	TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
112	TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
113	TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
114	TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
115	TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
116	TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
117	TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
118	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	1	0
119	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	1	0
120	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	1	0
121	TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
122	TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1	0
123	TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	1	0
124	TR-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
125	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	1	0	0
126	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	1	0	0
127	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	0	1
128	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	1	0
129	TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
130	TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	1	0
131	TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
132	TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
133	TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	1	0	0
134	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	1	0
135	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	1	0
136	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	1	0
137	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	1	0
138	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	1	0
139	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
140	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
141	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
142	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
143	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
144	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
145	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	1	0
146	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	1	0
147	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	1	0
148	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
149	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
150	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
151	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
152	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	1	0
153	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
154	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
155	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
156	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
157	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	1	0
158	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	1	0
159	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	1	0
160	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	1	0
161	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
162	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
163	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
164	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
165	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
166	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
167	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
168	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	1	0
169	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
170	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	1	0
171	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
172	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
173	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
174	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
175	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
176	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
177	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
178	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
179	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
180	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
181	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
182	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
183	TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
184	TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
185	TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	1	0
186	TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	1	0
187	TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	0	1	0
188	TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	0	1	0
189	TR-mRNAseq_Preprocess	0	1	0
190	TR-Mutation_Packager_Calls	1	0	0
191	TR-Mutation_Packager_Coverage	1	0	0
192	TR-RPPA_AnnotateWithGene	1	0	0
193	TP-Clinical_Pick_Tier1	0	1	0
194	TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
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574	NT-Mutation_Packager_Calls	1	0	0
575	NT-Mutation_Packager_Coverage	1	0	0
576	NT-RPPA_AnnotateWithGene	1	0	0
577	NB-Clinical_Pick_Tier1	1	0	0
578	NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
579	NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
580	NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
581	NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
582	NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
583	NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
584	NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
585	NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
586	NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
587	NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
588	NB-Merge_Clinical	1	0	0
589	NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
590	NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	1	0
591	NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
592	NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
593	NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1	0	0
594	NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	0	1	0
595	NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1	0	0
596	NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
597	NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	1	0
598	NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1	0	0
599	NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1	0	0
600	NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1	0	0
601	NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
602	NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	1	0	0
603	NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	1	0	0
604	NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1	0	0
605	NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	1	0	0
606	NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	1	0	0
607	NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	1	0	0
608	NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	1	0	0
609	NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
610	NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
611	NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1	0	0
612	NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
613	NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	1	0	0
614	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
615	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
616	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
617	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
618	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
619	NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
620	NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
621	NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
622	NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
623	NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
624	NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
625	NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
626	NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
627	NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
628	NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
629	NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
630	NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
631	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1	0	0
632	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	1	0
633	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1	0	0
634	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1	0	0
635	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1	0	0
636	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1	0	0
637	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	1	0
638	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	1	0
639	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	1	0
640	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	1	0
641	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
642	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
643	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
644	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1	0	0
645	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
646	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
647	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
648	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
649	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	1	0
650	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
651	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1	0	0
652	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1	0	0
653	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1	0	0
654	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1	0	0
655	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1	0	0
656	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1	0	0
657	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1	0	0
658	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
659	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	1	0
660	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
661	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
662	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
663	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
664	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
665	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
666	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
667	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0	0
668	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0	0
669	NB-mRNAseq_Preprocess	1	0	0
670	NB-Mutation_Packager_Calls	1	0	0
671	NB-Mutation_Packager_Coverage	1	0	0
672	NB-RPPA_AnnotateWithGene	1	0	0
	Total	441	219	12

This table generated on Fri Feb 15 19:12:21 2013

Broad GDAC Standard Data Status stddata__2013_02_03 Run for Tumor Type: PANCAN12

Broad GDAC Standard Data Status
stddata__2013_02_03 Run for Tumor Type: PANCAN12