Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2013_02_03 stddata Run
| Tumor | BCR | Clinical | CN | LowP | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF
|
|
| BLCA | 153 | 117 | 152 | 105 | 153 | 0 | 122 | 0 | 135 | 54 | 28 |
| BRCA | 929 | 869 | 899 | 0 | 888 | 527 | 841 | 0 | 894 | 408 | 507 |
| CESC | 134 | 32 | 114 | 0 | 122 | 0 | 97 | 0 | 122 | 0 | 36 |
| COAD | 423 | 423 | 413 | 69 | 420 | 155 | 192 | 0 | 407 | 269 | 155 |
| COADREAD | 592 | 591 | 575 | 104 | 582 | 224 | 264 | 0 | 550 | 399 | 224 |
| DLBC | 28 | 0 | 18 | 0 | 17 | 0 | 0 | 0 | 16 | 0 | 0 |
| ESCA | 20 | 0 | 0 | 0 | 20 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 598 | 565 | 563 | 0 | 405 | 542 | 161 | 491 | 0 | 214 | 291 |
| HNSC | 358 | 318 | 322 | 108 | 310 | 0 | 303 | 0 | 326 | 212 | 306 |
| KICH | 66 | 0 | 66 | 0 | 65 | 0 | 66 | 0 | 66 | 0 | 0 |
| KIRC | 502 | 502 | 493 | 0 | 500 | 72 | 480 | 0 | 481 | 454 | 293 |
| KIRP | 159 | 103 | 117 | 0 | 103 | 16 | 76 | 0 | 117 | 0 | 100 |
| LAML | 202 | 200 | 197 | 0 | 194 | 0 | 179 | 0 | 187 | 0 | 199 |
| LGG | 222 | 208 | 220 | 0 | 176 | 27 | 174 | 0 | 221 | 0 | 170 |
| LIHC | 99 | 62 | 97 | 0 | 98 | 0 | 34 | 0 | 96 | 0 | 0 |
| LUAD | 508 | 333 | 403 | 0 | 430 | 32 | 353 | 0 | 401 | 237 | 229 |
| LUSC | 399 | 327 | 358 | 0 | 359 | 154 | 258 | 0 | 349 | 195 | 178 |
| OV | 592 | 580 | 566 | 0 | 584 | 574 | 297 | 570 | 454 | 412 | 316 |
| PAAD | 57 | 0 | 57 | 0 | 49 | 0 | 31 | 0 | 34 | 0 | 34 |
| PANCAN12 | 5345 | 4853 | 5021 | 423 | 4905 | 2179 | 3415 | 1061 | 4264 | 2785 | 2819 |
| PRAD | 190 | 148 | 177 | 0 | 172 | 0 | 140 | 0 | 177 | 0 | 83 |
| READ | 169 | 168 | 162 | 35 | 162 | 69 | 72 | 0 | 143 | 130 | 69 |
| SARC | 52 | 0 | 29 | 0 | 29 | 0 | 0 | 0 | 29 | 0 | 0 |
| SKCM | 288 | 184 | 273 | 119 | 288 | 0 | 265 | 0 | 272 | 164 | 253 |
| STAD | 308 | 162 | 237 | 0 | 257 | 0 | 43 | 0 | 237 | 0 | 116 |
| THCA | 500 | 287 | 430 | 94 | 435 | 0 | 379 | 0 | 411 | 224 | 323 |
| UCEC | 512 | 451 | 493 | 106 | 500 | 54 | 370 | 0 | 487 | 200 | 248 |
| Totals | 7468 | 6039 | 6856 | 636 | 6736 | 2222 | 4933 | 1061 | 6062 | 3173 | 3934 |