Broad GDAC Standard Data Status
stddata__2013_02_22 Run for Tumor Type: SARC

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
SARC5214290520002900

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier110000
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
5CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
6CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
7CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
8CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
9CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
10CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
11CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
12Merge_Clinical00010
13Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
14Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
15Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
16Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
18Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
19Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
20Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
21Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
22Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
23Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
24Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
25Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
26Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
27Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
28Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
29Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
30Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
31Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
32Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
33Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
34Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
35Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
36Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
37Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
38Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
39Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
40Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
41Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
42Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
43Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
44Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
45Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
46Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
47Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
48Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
49Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
50Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
51Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
52Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
53Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
54Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
55Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
56Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
57Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
58Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
59Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
60Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
61Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
62Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
63Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
64Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
65Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
66Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
67Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
68Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
69Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
70Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
71Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
72Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
73Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
74Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
75Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
76Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
77Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
78Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
79Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
80Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
81Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
82Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
83Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
84Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
85Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
86Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
87Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
88Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
89Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
90Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
91Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
92Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
93mRNAseq_Preprocess10000
94Mutation_Packager_Calls10000
95Mutation_Packager_Coverage10000
96RPPA_AnnotateWithGene10000
97TR-Clinical_Pick_Tier110000
98TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
99TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
100TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
101TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
102TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
103TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
104TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
105TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
106TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
107TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
108TR-Merge_Clinical10000
109TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
110TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
111TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
112TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
113TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
114TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
115TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
116TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
117TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
118TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
119TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
120TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
121TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
122TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
123TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
124TR-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
125TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
126TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
127TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
128TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
129TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
130TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
131TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
132TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
133TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
134TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
135TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
136TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
137TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
138TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
139TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
140TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
141TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
142TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
143TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
144TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
145TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
146TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
147TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
148TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
149TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
150TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
151TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
152TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
153TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
154TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
155TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
156TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
157TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
158TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
159TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
160TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
161TR-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
162TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
163TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
164TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
165TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
166TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
167TR-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
168TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
169TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
170TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
171TR-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
172TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
173TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
174TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
175TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
176TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
177TR-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
178TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
179TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
180TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
181TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
182TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
183TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
184TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
185TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
186TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
187TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
188TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
189TR-mRNAseq_Preprocess10000
190TR-Mutation_Packager_Calls10000
191TR-Mutation_Packager_Coverage10000
192TR-RPPA_AnnotateWithGene10000
193TP-Clinical_Pick_Tier110000
194TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
195TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
196TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
197TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
198TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
199TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
200TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
201TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
202TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
203TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
204TP-Merge_Clinical00010
205TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
206TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
207TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
208TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
209TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
210TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
211TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
212TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
213TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
214TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
215TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
216TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
217TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
218TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
219TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
220TP-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
221TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
222TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
223TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
224TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
225TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
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256TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
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273TP-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
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276TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
277TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
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279TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
280TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
281TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
282TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
283TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
284TP-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
285TP-mRNAseq_Preprocess10000
286TP-Mutation_Packager_Calls10000
287TP-Mutation_Packager_Coverage10000
288TP-RPPA_AnnotateWithGene10000
289NT-Clinical_Pick_Tier110000
290NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
291NT-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
292NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
293NT-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
294NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
295NT-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
296NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
297NT-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
298NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
299NT-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
300NT-Merge_Clinical10000
301NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
302NT-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
303NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
304NT-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
305NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
306NT-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
307NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
308NT-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
309NT-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
310NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
311NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
312NT-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
313NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
314NT-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
315NT-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
316NT-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
317NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
318NT-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
319NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
320NT-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
321NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
322NT-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
323NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
324NT-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
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327NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
328NT-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
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332NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
333NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
334NT-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
335NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
336NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
337NT-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
338NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
339NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
340NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
341NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
342NT-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
343NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
344NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
345NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
346NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
347NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
348NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
349NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
350NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
351NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
352NT-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
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354NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
355NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
356NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
357NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
358NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
359NT-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
360NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
361NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
362NT-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
363NT-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
364NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
365NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
366NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
367NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
368NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
369NT-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
370NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
371NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
372NT-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
373NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
374NT-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
375NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
376NT-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
377NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
378NT-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
379NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
380NT-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
381NT-mRNAseq_Preprocess10000
382NT-Mutation_Packager_Calls10000
383NT-Mutation_Packager_Coverage10000
384NT-RPPA_AnnotateWithGene10000
385NB-Clinical_Pick_Tier110000
386NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
387NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
388NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
389NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
390NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
391NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
392NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
393NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
394NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
395NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
396NB-Merge_Clinical10000
397NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
398NB-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
399NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
400NB-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
401NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
402NB-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
403NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
404NB-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
405NB-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
406NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
407NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
408NB-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
409NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
410NB-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
411NB-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
412NB-Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
413NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
414NB-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
415NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
416NB-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
417NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
418NB-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
419NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
420NB-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
421NB-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
422NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
423NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
424NB-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
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426NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
427NB-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
428NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
429NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
430NB-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
431NB-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
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435NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
436NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
437NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
438NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
439NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
440NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
441NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
442NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
443NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
444NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
445NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
446NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
447NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
448NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
449NB-Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
450NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
451NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
452NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
453NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
454NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
455NB-Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
456NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
457NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
458NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
459NB-Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
460NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
461NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
462NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
463NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
464NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
465NB-Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
466NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
467NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
468NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
469NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
470NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
471NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
472NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
473NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
474NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
475NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
476NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
477NB-mRNAseq_Preprocess10000
478NB-Mutation_Packager_Calls10000
479NB-Mutation_Packager_Coverage10000
480NB-RPPA_AnnotateWithGene10000
Total44300370

This table generated on Mon Mar 4 14:12:21 2013