stddata__2013_03_09 Samples Summary Report
- Overview
+ Introduction
- Summary

There were 69 redacted samples, 2786 replicate aliquots, and 22 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1.  Get Full Table Summary of TCGA Tumor Data.

Tumor BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
BLCA 171 132 153 105 153 0 122 0 135 54 28
BRCA 951 872 927 0 888 526 842 0 892 408 772
CESC 144 40 129 0 122 0 97 0 122 0 39
COAD 423 423 422 69 420 153 191 0 407 269 155
COADREAD 592 591 586 104 582 222 263 0 550 399 224
DLBC 28 0 18 0 17 0 0 0 16 0 0
ESCA 50 0 20 0 50 0 0 0 0 0 0
GBM 598 565 580 0 405 542 160 491 0 214 291
HNSC 374 327 341 108 310 0 304 0 326 212 306
KICH 66 0 66 0 65 0 66 0 66 0 0
KIRC 513 502 497 0 500 72 480 0 481 454 293
KIRP 174 103 156 0 103 16 76 0 117 0 100
LAML 202 200 200 0 194 0 179 0 187 0 197
LGG 232 208 222 0 217 27 220 0 221 0 170
LIHC 110 69 99 0 98 0 34 0 96 0 0
LUAD 563 347 439 0 533 32 353 0 401 237 229
LUSC 468 327 388 0 359 154 261 0 349 195 178
OV 592 580 579 0 584 574 296 570 453 412 316
PAAD 73 0 57 0 49 0 40 0 34 0 34
PANCAN12 5536 4898 5188 423 5008 2176 3632 1061 4261 2785 3082
PRAD 190 148 178 0 188 0 140 0 177 0 83
READ 169 168 164 35 162 69 72 0 143 130 69
SARC 52 14 29 0 52 0 0 0 29 0 0
SKCM 316 191 273 119 316 0 265 0 272 164 253
STAD 308 165 257 0 308 0 43 0 237 0 116
THCA 500 298 435 94 435 0 409 0 411 224 323
UCEC 512 455 498 106 500 54 372 0 487 200 248
Totals 7779 6134 7127 636 7028 2219 5022 1061 6059 3173 4200
- Results
+ Redactions
+ Replicate Filtered Samples
+ Blacklisted Samples
+ Sample Heatmaps
+ Methods & Data
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