stddata__2013_03_26 Samples Summary Report
- Overview
+ Introduction
- Summary

There were 69 redacted samples, 2786 replicate aliquots, and 22 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1.  Get Full Table Summary of TCGA Tumor Data.

Tumor BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
BLCA 171 135 153 105 153 0 122 0 150 54 28
BRCA 951 878 927 0 928 526 842 0 892 408 772
CESC 144 40 129 0 134 0 116 0 122 0 39
COAD 423 423 422 69 420 153 364 0 407 269 155
COADREAD 592 591 586 104 582 222 488 0 550 399 224
DLBC 28 0 18 0 17 0 0 0 16 0 0
ESCA 50 0 20 0 50 0 0 0 0 0 0
GBM 598 565 580 0 405 542 160 491 0 214 291
HNSC 374 327 356 108 310 0 304 0 356 212 306
KICH 66 21 66 0 65 0 66 0 66 0 0
KIRC 513 502 497 0 500 72 480 0 481 454 293
KIRP 174 104 166 0 127 16 76 0 117 0 100
LAML 202 200 200 0 194 0 179 0 187 0 197
LGG 232 208 222 0 217 27 220 0 221 0 170
LIHC 110 69 99 0 98 0 69 0 96 0 0
LUAD 563 376 474 0 533 32 353 0 401 237 229
LUSC 468 327 398 0 385 154 261 0 349 195 178
OV 592 580 579 0 584 574 296 570 453 412 316
PAAD 73 1 57 0 49 0 40 0 34 0 34
PANCAN12 5536 4936 5248 423 5074 2176 3857 1061 4306 2785 3082
PRAD 200 156 188 0 188 0 176 0 177 0 83
READ 169 168 164 35 162 69 124 0 143 130 69
SARC 63 18 51 0 52 0 0 0 29 0 0
SKCM 316 191 288 119 316 0 265 0 272 164 253
STAD 308 178 308 0 308 0 43 0 237 0 116
THCA 500 318 473 94 500 0 409 0 426 224 323
UCEC 512 455 498 106 500 54 372 0 487 200 248
Totals 7800 6240 7333 636 7195 2219 5337 1061 6119 3173 4200
- Results
+ Redactions
+ Replicate Filtered Samples
+ Blacklisted Samples
+ Sample Heatmaps
+ Methods & Data
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