Pancreatic Adenocarcinoma (PAAD) Samples Summary Report
Overview
Introduction

The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, and lists those samples that are removed.

Summary

There were 6 redacted samples, 0 replicate aliquots, and 0 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1.  Get Full Table Summary of TCGA Tumor Data.

Tumor BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
PAAD 66 26 50 0 0 0 40 0 43 0 0
Results
Ingested Samples

This section includes a more granular look at the samples ingested into Firehose. A sample counts table is provided that is broken down by sample type (e.g. Primary Solid Tumor, Recurrent Solid Tumor, Normal Blood, etc.). Furthermore, each count is a link to an additional table containing a breakdown of the samples and their specific details (e.g. platform, sequencing center, etc.).

The following platforms are outdated and are not included in the counts depicted in the table below.

  • Agilent SurePrint G3 Human CGH Microarray Kit 1x1M

  • Agilent Human Genome CGH Microarray 244A

  • Agilent Human Genome CGH Custom Microarray 2x415K

  • Affymetrix Human Exon 1.0 ST Array

  • Illumina DNA Methylation OMA002 Cancer Panel I

  • Illumina DNA Methylation OMA003 Cancer Panel I

  • Illumina Human1M-Duo BeadChip

  • Illumina 550K Infinium HumanHap550 SNP Chip

The sample type short letter codes in the table below are defined in the following list.

  • TP: Primary Solid Tumor

  • TR: Recurrent Solid Tumor

  • TB: Primary Blood Derived Cancer - Peripheral Blood

  • TM: Metastatic

  • TAM: Additional Metastatic

  • NB: Blood Derived Normal

  • NT: Solid Tissue Normal

Table 2.  Click on any sample count to display a table detailing all the samples that comprise that count. Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.

Sample Type BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
TP 66 26 50 0 0 0 40 0 43 0 0
NB 42 20 42 0 0 0 0 0 0 0 0
NT 8 1 8 0 0 0 1 0 1 0 0
Totals 66 26 50 0 0 0 40 0 43 0 0
PAAD Primary Solid Tumor BCR Data

Table S1. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-6879 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-6880 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-6880 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-7273 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-7273 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-7276 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-7276 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-A44G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-A44H Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FB-A4P5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FB-A4P6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FB-A545 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5919 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5920 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5921 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5921 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5922 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5923 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5924 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5926 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-H6-A45N Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HV-A5A3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HV-A5A4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HV-A5A5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HV-A5A6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7289 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7289 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7918 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7918 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7919 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7920 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7922 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7923 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7924 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7925 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7925 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7926 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8001 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8001 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8002 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8002 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8003 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8003 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8005 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8005 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8315 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8315 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8317 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8317 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8519 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8519 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8636 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8636 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8637 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8637 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8638 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8638 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-A49G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-A49H Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-A49I Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-A4BH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-A4BK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7644 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7644 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7645 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7645 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7646 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7646 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7647 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7647 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7649 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7649 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7651 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7651 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7652 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7652 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7654 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7654 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7885 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7885 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7886 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7886 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7887 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7887 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7888 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7888 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7889 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7889 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7890 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7890 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7891 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7891 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7893 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7893 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7897 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7897 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-8126 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-8126 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-8127 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-8127 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-M8-A5N4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
PAAD Primary Solid Tumor Clinical Data

Table S2. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-H6-A45N Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7289 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7918 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7925 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8001 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8002 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8003 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8005 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8315 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8317 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8519 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8636 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8637 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8638 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-A49G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-A49H Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-A49I Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-A4BH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-A4BK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
PAAD Primary Solid Tumor CN Data

Table S3. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-6879-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-6879-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-6879-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-6879-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-F2-6880-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-6880-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-6880-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-6880-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-6880-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-F2-7273-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-7273-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-7273-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-7273-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-7273-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-F2-7276-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-7276-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-7276-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-7276-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-7276-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5919-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5919-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5919-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5919-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5919-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5920-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5920-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5920-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5920-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5920-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5921-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5921-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5921-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5921-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5921-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5922-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5922-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5922-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5922-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5922-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5923-01A-12D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5923-01A-12D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5923-01A-12D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5923-01A-12D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5923-01A-12D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5924-01A-13D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5924-01A-13D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5924-01A-13D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5924-01A-13D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5924-01A-13D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5926-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5926-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5926-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5926-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5926-01A-11D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-H6-8124-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-H6-8124-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-H6-8124-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-H6-8124-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-H6-8124-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7289-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7289-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7289-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7289-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7289-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7918-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7918-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7918-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7918-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7918-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7919-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7919-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7919-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7919-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7919-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7920-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7920-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7920-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7920-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7920-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7922-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7922-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7922-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7922-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7922-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7923-01A-12D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7923-01A-12D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7923-01A-12D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7923-01A-12D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7923-01A-12D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7924-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7924-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7924-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7924-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7924-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7925-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7925-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7925-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7925-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7925-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7926-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7926-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7926-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7926-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7926-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8001-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8001-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8001-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8001-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8001-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8002-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8002-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8002-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8002-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8002-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8003-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8003-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8003-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8003-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8003-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8005-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8005-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8005-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8005-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8005-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8315-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8315-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8315-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8315-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8315-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8317-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8317-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8317-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8317-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8317-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8519-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8519-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8519-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8519-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8519-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8636-01A-21D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8636-01A-21D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8636-01A-21D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8636-01A-21D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8636-01A-21D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8637-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8637-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8637-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8637-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8637-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8638-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8638-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8638-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8638-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8638-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7644-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7644-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7644-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7644-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7644-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7645-01A-22D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7645-01A-22D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7645-01A-22D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7645-01A-22D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7645-01A-22D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7646-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7646-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7646-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7646-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7646-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7647-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7647-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7647-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7647-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7647-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7649-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7649-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7649-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7649-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7649-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7651-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7651-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7651-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7651-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7651-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7652-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7652-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7652-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7652-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7652-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7654-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7654-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7654-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7654-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7654-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7885-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7885-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7885-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7885-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7885-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7886-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7886-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7886-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7886-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7886-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7887-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7887-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7887-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7887-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7887-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7888-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7888-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7888-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7888-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7888-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7889-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7889-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7889-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7889-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7889-01A-11D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7890-01A-12D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7890-01A-12D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7890-01A-12D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7890-01A-12D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7890-01A-12D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7891-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7891-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7891-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7891-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7891-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7893-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7893-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7893-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7893-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7893-01A-11D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7897-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7897-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7897-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7897-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7897-01A-21D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-8126-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-8126-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-8126-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-8126-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-8126-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-8127-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-8127-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-8127-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-8127-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-8127-01A-11D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
PAAD Primary Solid Tumor mRNASeq Data

Table S4. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-F2-6879-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-F2-6879-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-F2-6879-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-F2-6879-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-F2-7273-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-F2-7273-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-F2-7273-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-F2-7273-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-F2-7273-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-F2-7276-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-F2-7276-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-F2-7276-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-F2-7276-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-F2-7276-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-H6-8124-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-H6-8124-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-H6-8124-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-H6-8124-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-H6-8124-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7918-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7918-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7918-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7918-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7918-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7919-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7919-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7919-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7919-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7919-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7920-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7920-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7920-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7920-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7920-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7922-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7922-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7922-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7922-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7922-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7923-01A-12R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7923-01A-12R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7923-01A-12R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7923-01A-12R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7923-01A-12R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7924-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7924-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7924-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7924-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7924-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7925-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7925-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7925-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7925-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7925-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-7926-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-7926-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-7926-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-7926-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-7926-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8001-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8001-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8001-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8001-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8001-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8002-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8002-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8002-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8002-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8002-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8003-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8003-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8003-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8003-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8003-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8315-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8315-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8315-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8315-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8315-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8317-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8317-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8317-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8317-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8317-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8519-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8519-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8519-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8519-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8519-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8636-01A-21R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8636-01A-21R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8636-01A-21R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8636-01A-21R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8636-01A-21R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8637-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8637-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8637-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8637-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8637-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-HZ-8638-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-HZ-8638-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-HZ-8638-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-HZ-8638-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-HZ-8638-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7644-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7644-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7644-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7644-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7644-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7645-01A-22R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7645-01A-22R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7645-01A-22R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7645-01A-22R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7645-01A-22R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7646-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7646-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7646-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7646-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7646-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7647-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7647-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7647-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7647-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7647-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7649-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7649-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7649-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7649-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7649-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7651-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7651-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7651-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7651-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7651-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7652-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7652-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7652-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7652-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7652-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7654-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7654-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7654-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7654-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7654-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7885-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7885-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7885-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7885-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7885-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7886-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7886-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7886-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7886-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7886-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7887-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7887-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7887-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7887-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7887-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7888-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7888-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7888-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7888-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7888-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7889-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7889-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7889-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7889-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7889-01A-11R-2156-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7890-01A-12R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7890-01A-12R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7890-01A-12R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7890-01A-12R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7890-01A-12R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7891-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7891-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7891-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7891-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7891-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7893-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7893-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7893-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7893-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7893-01A-11R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-7897-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-7897-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-7897-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-7897-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-7897-01A-21R-2204-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-8126-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-8126-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-8126-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-8126-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-8126-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-IB-8127-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-IB-8127-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-IB-8127-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-IB-8127-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-IB-8127-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
PAAD Primary Solid Tumor miRSeq Data

Table S5. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-F2-6879-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-F2-6880-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-F2-6880-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-F2-7273-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-F2-7273-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-F2-7276-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-F2-7276-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-H6-8124-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-H6-8124-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7289-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7289-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7918-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7918-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7919-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7919-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7920-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7920-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7922-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7922-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7923-01A-12R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7923-01A-12R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7924-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7924-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7925-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7925-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-7926-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-7926-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8001-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8001-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8002-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8002-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8003-01A-21R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8003-01A-21R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8005-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8005-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8315-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8315-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8317-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8317-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8519-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8519-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8636-01A-21R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8636-01A-21R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8637-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8637-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HZ-8638-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HZ-8638-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7644-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7644-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7645-01A-22R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7645-01A-22R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7646-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7646-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7647-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7647-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7649-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7649-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7651-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7651-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7652-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7652-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7654-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7654-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7885-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7885-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7886-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7886-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7887-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7887-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7888-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7888-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7889-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7889-01A-11R-2155-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7890-01A-12R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7890-01A-12R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7891-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7891-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7893-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7893-01A-11R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-7897-01A-21R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-7897-01A-21R-2203-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-8126-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-8126-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IB-8127-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IB-8127-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
PAAD Blood Derived Normal BCR Data

Table S6. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-6879 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-6880 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-6880 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-F2-7276 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-F2-7276 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7289 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7289 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7918 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7918 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7919 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7920 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7922 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7923 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7924 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7925 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7925 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-7926 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-7926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8001 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8001 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8002 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8002 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8003 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8003 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8005 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8005 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8315 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8315 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8317 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8317 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8519 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8519 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8636 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8636 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8637 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8637 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HZ-8638 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-HZ-8638 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7644 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7644 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7645 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7645 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7646 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7646 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7647 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7647 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7649 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7649 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7651 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7651 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7652 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7652 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7654 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7654 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7885 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7885 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7886 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7886 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7887 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7887 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7888 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7888 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7889 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7889 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7890 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7890 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7891 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7891 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7893 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7893 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-7897 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-7897 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-8126 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-8126 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IB-8127 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-IB-8127 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
PAAD Blood Derived Normal Clinical Data

Table S7. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7289 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7918 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7925 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-7926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8001 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8002 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8003 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8005 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8315 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8317 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8519 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8636 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8637 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HZ-8638 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
PAAD Blood Derived Normal CN Data

Table S8. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-F2-6879-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-6879-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-6879-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-6879-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-6879-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-F2-6880-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-6880-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-6880-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-6880-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-6880-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-F2-7276-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-F2-7276-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-F2-7276-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-F2-7276-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-F2-7276-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-H6-8124-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-H6-8124-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-H6-8124-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-H6-8124-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-H6-8124-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7289-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7289-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7289-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7289-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7289-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7918-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7918-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7918-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7918-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7918-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7919-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7919-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7919-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7919-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7919-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7920-10B-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7920-10B-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7920-10B-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7920-10B-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7920-10B-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7922-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7922-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7922-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7922-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7922-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7923-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7923-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7923-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7923-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7923-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7924-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7924-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7924-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7924-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7924-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7925-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7925-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7925-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7925-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7925-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-7926-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-7926-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-7926-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-7926-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-7926-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8001-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8001-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8001-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8001-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8001-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8002-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8002-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8002-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8002-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8002-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8003-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8003-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8003-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8003-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8003-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8005-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8005-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8005-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8005-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8005-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8315-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8315-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8315-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8315-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8315-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8317-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8317-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8317-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8317-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8317-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8519-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8519-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8519-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8519-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8519-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8636-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8636-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8636-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8636-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8636-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8637-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8637-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8637-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8637-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8637-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HZ-8638-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HZ-8638-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HZ-8638-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HZ-8638-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HZ-8638-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7644-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7644-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7644-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7644-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7644-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7645-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7645-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7645-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7645-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7645-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7646-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7646-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7646-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7646-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7646-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7647-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7647-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7647-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7647-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7647-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7649-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7649-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7649-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7649-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7649-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7651-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7651-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7651-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7651-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7651-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7652-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7652-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7652-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7652-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7652-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7654-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7654-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7654-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7654-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7654-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7885-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7885-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7885-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7885-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7885-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7886-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7886-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7886-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7886-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7886-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7887-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7887-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7887-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7887-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7887-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7888-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7888-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7888-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7888-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7888-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7889-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7889-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7889-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7889-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7889-10A-01D-2153-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7890-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7890-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7890-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7890-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7890-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7891-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7891-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7891-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7891-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7891-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7893-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7893-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7893-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7893-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7893-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-7897-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-7897-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-7897-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-7897-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-7897-10A-01D-2200-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-8126-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-8126-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-8126-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-8126-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-8126-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IB-8127-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IB-8127-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IB-8127-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IB-8127-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IB-8127-10A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
PAAD Solid Tissue Normal BCR Data

Table S9. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FZ-5919 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5919 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5920 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5920 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5921 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5921 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5922 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5922 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5923 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5923 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5924 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5924 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FZ-5926 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-FZ-5926 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set International Genomics Consortium 1 biospecimen
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
PAAD Solid Tissue Normal Clinical Data

Table S10. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-H6-8124 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
PAAD Solid Tissue Normal CN Data

Table S11. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FZ-5919-11A-02D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5919-11A-02D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5919-11A-02D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5919-11A-02D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5919-11A-02D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5920-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5920-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5920-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5920-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5920-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5921-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5921-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5921-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5921-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5921-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5922-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5922-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5922-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5922-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5922-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5923-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5923-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5923-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5923-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5923-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5924-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5924-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5924-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5924-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5924-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FZ-5926-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FZ-5926-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FZ-5926-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FZ-5926-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FZ-5926-11A-01D-1608-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-H6-8124-11A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-H6-8124-11A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-H6-8124-11A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-H6-8124-11A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-H6-8124-11A-01D-2392-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
PAAD Solid Tissue Normal mRNASeq Data

Table S12. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-H6-8124-11A-01R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-H6-8124-11A-01R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-H6-8124-11A-01R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-H6-8124-11A-01R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-H6-8124-11A-01R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
PAAD Solid Tissue Normal miRSeq Data

Table S13. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-H6-8124-11A-01R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-H6-8124-11A-01R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression

Figure 1.  Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Filtered Samples
Redactions

For TCGA data, redaction is the removal of cases from the data prior to publication or release. Redacted cases are generally rare, but cases must be redacted when the TSS/BCR subject link is incorrect ("unknown patient identity"), or in the case of genotype mismatch, completely wrong cancer, or completely wrong organ/tissue. Redaction occurs regardless of a case's analyte characterization or DCC data deposition status.

Rescission is the removal of samples from the list of redactions. This happens if the reason for redaction is eventually cleared up. For clarity, rescinded redactions do not appear in this report.

Table 3.  Get Full Table

Barcode UUID Date Type Notes
TCGA-FQ-6551 965cfb59-cce1-4318-8772-0ba76c08457b 04/23/2013 PAAD Redacted per ticket TCGA-1304.
TCGA-FQ-6552 38dae2b5-6346-46ec-adac-d4c76d2dc19f 04/23/2013 PAAD This participant redacted per ticket TCGA-1304.
TCGA-FQ-6554 356323fb-27f9-41bb-bf35-f84342a800cc 04/23/2013 PAAD This participant redacted per ticket TCGA-1304.
TCGA-FQ-6555 ce8360cf-f670-4872-a1c9-0c5325a7699d 04/23/2013 PAAD This participant redacted per ticket TCGA-1304.
TCGA-FQ-6558 0e1dfce0-771b-456f-9ef7-0ff0d59ac153 04/23/2013 PAAD This participant redacted per ticket TCGA-1304.
TCGA-FQ-6559 c80f9e78-ba61-46ae-9062-9472281c19cb 04/23/2013 PAAD This participant redacted per ticket TCGA-1304.
Replicate Samples

In many instances there is more than one aliquot for a given combination of individual, platform, and data type. However, only one aliquot may be ingested into Firehose. Therefore, a set of precedence rules are applied to select the most scientifically advantageous one among them. Two filters are applied to achieve this aim: an Analyte Replicate Filter and a Sort Replicate Filter.

Analyte Replicate Filter

The following precedence rules are applied when the aliquots have differing analytes. For RNA aliquots, R analytes are preferred over T analytes, since it is the more accurate extraction protocol. For DNA aliquots, D analytes (native DNA) are preferred over G, W, or X (whole-genome amplified) analytes, unless the G, W, or X analyte barcode has a higher plate number.

Sort Replicate Filter

The following precedence rules are applied when the analyte filter still produces more than one sample. The sort filter chooses the aliquot with the highest lexicographical sort value, to ensure that the barcode with the highest portion and/or plate number is selected when all other barcode fields are identical.

There were no replicate samples.

Blacklisted Samples

In certain circumstances, replicate filtering may choose the less favorable among two or more aliquots. For instance, an analyst may manually review two aliquots for a given individual and determine that one is superior. If the replicate filtering would choose the inferior sample, then the inferior sample can be added to this blacklist. This would result in the desired sample being chosen. This table lists those blacklisted samples and a reason for their being blacklisted.

There were no blacklisted samples.

Methods & Data
Redactions

Redaction data was taken from the TCGA Data Portal using the query string:

https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?categoryId=CATEGORY_ID

for the following CATEGORY_ID values:

  • 1 = Tumor tissue origin incorrect

  • 2 = Tumor type incorrect

  • 3 = Genotype mismatch

  • 5 = Subject identity unknown

  • 27 = Duplicate case

  • 37 = Administrative Compliance

Preprocessors
mRNA Preprocessor

The mRNA preprocess median module chooses the matrix for the platform(Affymetrix HG U133, Affymetrix Exon Array and Agilent Gene Expression) with the largest number of samples.

mRNAseq Preprocessor

The mRNAseq preprocessor picks the "scaled_estimate" (RSEM) value from Illumina HiSeq/GA2 mRNAseq level_3 (v2) data set and makes the mRNAseq matrix with log2 transformed for the downstream analysis. If there are overlap samples between two different platforms, samples from illumina hiseq will be selected. The pipeline also creates the matrix with RPKM and log2 transform from HiSeq/GA2 mRNAseq level 3 (v1) data set.

miRseq Preprocessor

The miRseq preprocessor picks the "RPM" (reads per million miRNA precursor reads) from the Illumina HiSeq/GA miRseq Level_3 data set and makes the matrix with log2 transformed values.

Methylation Preprocessor

The methylation preprocessor filters methylation data for use in downstream pipelines. To learn more about this preprocessor, please visit the documentation.