Sarcoma (SARC) Samples Summary Report
Overview
Introduction

The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, and lists those samples that are removed.

Summary

There were 0 redacted samples, 0 replicate aliquots, and 0 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1.  Get Full Table Summary of TCGA Tumor Data.

Tumor BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
SARC 73 29 52 0 52 0 0 0 29 0 0
Results
Ingested Samples

This section includes a more granular look at the samples ingested into Firehose. A sample counts table is provided that is broken down by sample type (e.g. Primary Solid Tumor, Recurrent Solid Tumor, Normal Blood, etc.). Furthermore, each count is a link to an additional table containing a breakdown of the samples and their specific details (e.g. platform, sequencing center, etc.).

The following platforms are outdated and are not included in the counts depicted in the table below.

  • Agilent SurePrint G3 Human CGH Microarray Kit 1x1M

  • Agilent Human Genome CGH Microarray 244A

  • Agilent Human Genome CGH Custom Microarray 2x415K

  • Affymetrix Human Exon 1.0 ST Array

  • Illumina DNA Methylation OMA002 Cancer Panel I

  • Illumina DNA Methylation OMA003 Cancer Panel I

  • Illumina Human1M-Duo BeadChip

  • Illumina 550K Infinium HumanHap550 SNP Chip

The sample type short letter codes in the table below are defined in the following list.

  • TP: Primary Solid Tumor

  • TR: Recurrent Solid Tumor

  • TB: Primary Blood Derived Cancer - Peripheral Blood

  • TM: Metastatic

  • TAM: Additional Metastatic

  • NB: Blood Derived Normal

  • NT: Solid Tissue Normal

Table 2.  Click on any sample count to display a table detailing all the samples that comprise that count. Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.

Sample Type BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
TP 73 29 52 0 52 0 0 0 29 0 0
TR 2 0 2 0 2 0 0 0 1 0 0
NB 47 22 44 0 0 0 0 0 0 0 0
NT 9 3 9 0 4 0 0 0 0 0 0
Totals 73 29 52 0 52 0 0 0 29 0 0
SARC Primary Solid Tumor BCR Data

Table S1. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A23R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A23T Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A23U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A23Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A23Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A240 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2IZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3M1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3M2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3U5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3NJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3NK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3TO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A2OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A3L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A3YV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A43Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HS-A5N7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HS-A5N8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HS-A5N9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HS-A5NA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A3OV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EI Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A3RQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A4AJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A4AK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3KA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A3PN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A3PO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A42W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A42X Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KD-A5QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KD-A5QT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KD-A5QU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-MO-A47P Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-MO-A47R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DL Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DM Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-PC-A5DP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
SARC Primary Solid Tumor Clinical Data

Table S2. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A23R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A23T Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A23U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A23Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A23Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A240 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2IZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A3NJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A3RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A2OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A3YV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A43Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IS-A3KA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IW-A3M5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
SARC Primary Solid Tumor CN Data

Table S3. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KU-01A-32D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KU-01A-32D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KU-01A-32D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KU-01A-32D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KU-01A-32D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KW-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KW-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KW-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KW-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KW-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KX-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KX-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KX-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KX-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KX-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KY-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KY-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KY-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KY-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KY-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KZ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KZ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KZ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KZ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KZ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L0-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L0-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L0-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L0-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L0-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L1-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L1-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L1-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L1-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L1-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L2-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L2-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L2-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L2-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L2-01A-22D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L3-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L3-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L3-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L3-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L3-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2IZ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2IZ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2IZ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2IZ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2IZ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J0-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J0-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J0-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J0-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J0-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J1-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J1-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J1-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J1-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J1-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J4-01A-32D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J4-01A-32D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J4-01A-32D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J4-01A-32D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J4-01A-32D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LT-01A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LT-01A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LT-01A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LT-01A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LT-01A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LU-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LU-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LU-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LU-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LU-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LW-01A-21D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LW-01A-21D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LW-01A-21D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LW-01A-21D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LW-01A-21D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3M1-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3M1-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3M1-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3M1-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3M1-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3M2-01A-21D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3M2-01A-21D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3M2-01A-21D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3M2-01A-21D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3M2-01A-21D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3U5-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3U5-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3U5-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3U5-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3U5-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A2QS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A2QS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A2QS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A2QS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A2QS-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3NJ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3NJ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3NJ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3NJ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3NJ-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3NK-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3NK-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3NK-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3NK-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3NK-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3RE-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3RE-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3RE-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3RE-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3RE-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3TO-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3TO-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3TO-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3TO-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3TO-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A48G-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A48G-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A48G-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A48G-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A48G-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A2OT-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A2OT-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A2OT-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A2OT-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A2OT-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A3L4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A3L4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A3L4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A3L4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A3L4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A3YV-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A3YV-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A3YV-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A3YV-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A3YV-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A43Z-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A43Z-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A43Z-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A43Z-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A43Z-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A3OV-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A3OV-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A3OV-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A3OV-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A3OV-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EH-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EH-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EH-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EH-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EH-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EI-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EI-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EI-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EI-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EI-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EK-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EK-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EK-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EK-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EK-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A3RQ-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A3RQ-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A3RQ-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A3RQ-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A3RQ-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A4AJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A4AJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A4AJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A4AJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A4AJ-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A4AK-01A-21D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A4AK-01A-21D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A4AK-01A-21D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A4AK-01A-21D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A4AK-01A-21D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K7-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K7-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K7-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K7-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K7-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K8-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K8-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K8-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K8-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K8-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3KA-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3KA-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3KA-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3KA-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3KA-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M4-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M5-01A-22D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M5-01A-22D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M5-01A-22D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M5-01A-22D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M5-01A-22D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M6-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A3PN-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PN-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PN-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PN-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PN-01A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A3PO-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PO-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PO-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PO-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PO-01A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A42W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A42W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A42W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A42W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A42W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A42X-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A42X-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A42X-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A42X-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A42X-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-KF-A41W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-KF-A41W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-KF-A41W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-KF-A41W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-KF-A41W-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-MO-A47P-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-MO-A47P-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-MO-A47P-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-MO-A47P-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-MO-A47P-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-MO-A47R-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-MO-A47R-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-MO-A47R-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-MO-A47R-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-MO-A47R-01A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
SARC Primary Solid Tumor Methylation Data

Table S4. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KU-01A-32D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1KW-01A-22D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1KX-01A-22D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1KY-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1KZ-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1L0-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1L1-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1L2-01A-22D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A1L3-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A2IZ-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A2J0-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A2J1-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A2J4-01A-32D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3LS-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3LT-01A-12D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3LU-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3LW-01A-21D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3M1-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3M2-01A-21D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-DX-A3U5-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A2QS-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A3NJ-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A3NK-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A3RE-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A3TO-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FX-A48G-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-HB-A2OT-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-HB-A3L4-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-HB-A3YV-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-HB-A43Z-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IE-A3OV-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IE-A4EH-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IE-A4EI-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IE-A4EJ-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IE-A4EK-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IF-A3RQ-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IF-A4AJ-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IF-A4AK-01A-21D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IS-A3K6-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IS-A3K7-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IS-A3K8-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IS-A3KA-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IW-A3M4-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IW-A3M5-01A-22D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IW-A3M6-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A3PN-01A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A3PO-01A-11D-A21R-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A42W-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A42X-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-KF-A41W-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-MO-A47P-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-MO-A47R-01A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
SARC Primary Solid Tumor miRSeq Data

Table S5. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A2IZ-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A2IZ-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A2J0-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A2J0-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A2J1-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A2J1-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A2J4-01A-32R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A2J4-01A-32R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3LS-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3LS-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3LT-01A-12R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3LT-01A-12R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3LU-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3LU-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3LW-01A-21R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3LW-01A-21R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3M1-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3M1-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3M2-01A-21R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3M2-01A-21R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-DX-A3U5-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-DX-A3U5-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FX-A2QS-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FX-A2QS-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FX-A3NJ-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FX-A3NJ-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FX-A3NK-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FX-A3NK-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FX-A3RE-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FX-A3RE-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FX-A3TO-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FX-A3TO-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HB-A2OT-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HB-A2OT-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-HB-A3L4-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-HB-A3L4-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IE-A3OV-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IE-A3OV-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IF-A3RQ-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IF-A3RQ-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IS-A3K6-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IS-A3K6-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IS-A3K7-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IS-A3K7-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IS-A3K8-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IS-A3K8-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IS-A3KA-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IS-A3KA-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IW-A3M4-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IW-A3M4-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IW-A3M5-01A-22R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IW-A3M5-01A-22R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IW-A3M6-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IW-A3M6-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-K1-A3PN-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-K1-A3PN-01A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-K1-A3PO-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-K1-A3PO-01A-11R-A21U-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
SARC Recurrent Solid Tumor BCR Data

Table S6. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-K1-A3PN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A42X Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
SARC Recurrent Solid Tumor CN Data

Table S7. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-K1-A3PN-02A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PN-02A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PN-02A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PN-02A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PN-02A-11D-A227-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A42X-02A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A42X-02A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A42X-02A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A42X-02A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A42X-02A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
SARC Recurrent Solid Tumor Methylation Data

Table S8. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-K1-A3PN-02A-11D-A22B-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A42X-02A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
SARC Recurrent Solid Tumor miRSeq Data

Table S9. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-K1-A3PN-02A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-K1-A3PN-02A-11R-A22I-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
SARC Blood Derived Normal BCR Data

Table S10. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A1L3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2IZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A2J4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3LW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3M1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3M2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-DX-A3U5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3NJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3NK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A3TO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A2OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A3L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A3YV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-HB-A43Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EI Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A4EK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3K8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IS-A3KA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IW-A3M6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A3PN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A3PO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A42W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-MO-A47P Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-MO-A47R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
SARC Blood Derived Normal Clinical Data

Table S11. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A1L3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2IZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-DX-A2J4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A3NJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A3RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A2OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A3YV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-HB-A43Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IS-A3KA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IW-A3M5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
SARC Blood Derived Normal CN Data

Table S12. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-DX-A1KU-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KU-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KU-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KU-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KU-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KW-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KW-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KW-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KW-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KW-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KX-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KX-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KX-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KX-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KX-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KY-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KY-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KY-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KY-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KY-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1KZ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1KZ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1KZ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1KZ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1KZ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L0-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L0-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L0-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L0-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L0-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L1-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L1-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L1-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L1-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L1-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L2-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L2-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L2-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L2-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L2-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A1L3-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A1L3-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A1L3-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A1L3-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A1L3-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2IZ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2IZ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2IZ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2IZ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2IZ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J0-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J0-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J0-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J0-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J0-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J1-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J1-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J1-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J1-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J1-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A2J4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A2J4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A2J4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A2J4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A2J4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3LW-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3LW-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3LW-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3LW-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3LW-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3M1-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3M1-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3M1-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3M1-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3M1-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3M2-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3M2-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3M2-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3M2-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3M2-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-DX-A3U5-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-DX-A3U5-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-DX-A3U5-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-DX-A3U5-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-DX-A3U5-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A2QS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A2QS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A2QS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A2QS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A2QS-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3NJ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3NJ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3NJ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3NJ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3NJ-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3NK-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3NK-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3NK-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3NK-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3NK-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3RE-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3RE-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3RE-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3RE-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3RE-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A3TO-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A3TO-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A3TO-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A3TO-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A3TO-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A48G-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A48G-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A48G-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A48G-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A48G-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A2OT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A2OT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A2OT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A2OT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A2OT-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A3L4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A3L4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A3L4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A3L4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A3L4-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-HB-A3YV-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-HB-A3YV-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-HB-A3YV-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-HB-A3YV-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-HB-A3YV-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EH-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EH-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EH-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EH-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EH-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EI-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EI-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EI-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EI-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EI-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EJ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EJ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EJ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EJ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EJ-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A4EK-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A4EK-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A4EK-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A4EK-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A4EK-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K7-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K7-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K7-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K7-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K7-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IS-A3K8-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IS-A3K8-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IS-A3K8-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IS-A3K8-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IS-A3K8-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M4-10B-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M4-10B-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M4-10B-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M4-10B-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M4-10B-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M5-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M5-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M5-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M5-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M5-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IW-A3M6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IW-A3M6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IW-A3M6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IW-A3M6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IW-A3M6-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A3PN-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PN-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PN-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PN-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PN-10A-01D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A3PO-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PO-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PO-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PO-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PO-10A-01D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A42W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A42W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A42W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A42W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A42W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-KF-A41W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-KF-A41W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-KF-A41W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-KF-A41W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-KF-A41W-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-MO-A47P-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-MO-A47P-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-MO-A47P-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-MO-A47P-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-MO-A47P-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-MO-A47R-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-MO-A47R-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-MO-A47R-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-MO-A47R-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-MO-A47R-10A-01D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
SARC Solid Tissue Normal BCR Data

Table S13. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IE-A3OV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A3RQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A4AJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IF-A4AK Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A3PO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-K1-A42X Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
SARC Solid Tissue Normal Clinical Data

Table S14. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FX-A2QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-FX-A48G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-KF-A41W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
SARC Solid Tissue Normal CN Data

Table S15. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FX-A2QS-11A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A2QS-11A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A2QS-11A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A2QS-11A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A2QS-11A-11D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FX-A48G-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-FX-A48G-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-FX-A48G-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-FX-A48G-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FX-A48G-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IE-A3OV-11A-22D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IE-A3OV-11A-22D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IE-A3OV-11A-22D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IE-A3OV-11A-22D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IE-A3OV-11A-22D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A3RQ-11A-11D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A3RQ-11A-11D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A3RQ-11A-11D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A3RQ-11A-11D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A3RQ-11A-11D-A229-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A4AJ-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A4AJ-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A4AJ-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A4AJ-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A4AJ-11A-12D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IF-A4AK-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IF-A4AK-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IF-A4AK-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IF-A4AK-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IF-A4AK-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A3PO-11A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A3PO-11A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A3PO-11A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A3PO-11A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A3PO-11A-12D-A21P-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-K1-A42X-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-K1-A42X-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-K1-A42X-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-K1-A42X-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-K1-A42X-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-KF-A41W-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-KF-A41W-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-KF-A41W-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-KF-A41W-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-KF-A41W-11A-11D-A24M-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
SARC Solid Tissue Normal Methylation Data

Table S16. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FX-A48G-11A-12D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IF-A4AJ-11A-12D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-K1-A42X-11A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-KF-A41W-11A-11D-A24W-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function

Figure 1.  Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Filtered Samples
Redactions

For TCGA data, redaction is the removal of cases from the data prior to publication or release. Redacted cases are generally rare, but cases must be redacted when the TSS/BCR subject link is incorrect ("unknown patient identity"), or in the case of genotype mismatch, completely wrong cancer, or completely wrong organ/tissue. Redaction occurs regardless of a case's analyte characterization or DCC data deposition status.

Rescission is the removal of samples from the list of redactions. This happens if the reason for redaction is eventually cleared up. For clarity, rescinded redactions do not appear in this report.

There were no redactions.

Replicate Samples

In many instances there is more than one aliquot for a given combination of individual, platform, and data type. However, only one aliquot may be ingested into Firehose. Therefore, a set of precedence rules are applied to select the most scientifically advantageous one among them. Two filters are applied to achieve this aim: an Analyte Replicate Filter and a Sort Replicate Filter.

Analyte Replicate Filter

The following precedence rules are applied when the aliquots have differing analytes. For RNA aliquots, R analytes are preferred over T analytes, since it is the more accurate extraction protocol. For DNA aliquots, D analytes (native DNA) are preferred over G, W, or X (whole-genome amplified) analytes, unless the G, W, or X analyte barcode has a higher plate number.

Sort Replicate Filter

The following precedence rules are applied when the analyte filter still produces more than one sample. The sort filter chooses the aliquot with the highest lexicographical sort value, to ensure that the barcode with the highest portion and/or plate number is selected when all other barcode fields are identical.

There were no replicate samples.

Blacklisted Samples

In certain circumstances, replicate filtering may choose the less favorable among two or more aliquots. For instance, an analyst may manually review two aliquots for a given individual and determine that one is superior. If the replicate filtering would choose the inferior sample, then the inferior sample can be added to this blacklist. This would result in the desired sample being chosen. This table lists those blacklisted samples and a reason for their being blacklisted.

There were no blacklisted samples.

Methods & Data
Redactions

Redaction data was taken from the TCGA Data Portal using the query string:

https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?categoryId=CATEGORY_ID

for the following CATEGORY_ID values:

  • 1 = Tumor tissue origin incorrect

  • 2 = Tumor type incorrect

  • 3 = Genotype mismatch

  • 5 = Subject identity unknown

  • 27 = Duplicate case

  • 37 = Administrative Compliance

Preprocessors
mRNA Preprocessor

The mRNA preprocess median module chooses the matrix for the platform(Affymetrix HG U133, Affymetrix Exon Array and Agilent Gene Expression) with the largest number of samples.

mRNAseq Preprocessor

The mRNAseq preprocessor picks the "scaled_estimate" (RSEM) value from Illumina HiSeq/GA2 mRNAseq level_3 (v2) data set and makes the mRNAseq matrix with log2 transformed for the downstream analysis. If there are overlap samples between two different platforms, samples from illumina hiseq will be selected. The pipeline also creates the matrix with RPKM and log2 transform from HiSeq/GA2 mRNAseq level 3 (v1) data set.

miRseq Preprocessor

The miRseq preprocessor picks the "RPM" (reads per million miRNA precursor reads) from the Illumina HiSeq/GA miRseq Level_3 data set and makes the matrix with log2 transformed values.

Methylation Preprocessor

The methylation preprocessor filters methylation data for use in downstream pipelines. To learn more about this preprocessor, please visit the documentation.