Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2013_05_23 stddata Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

ACC	80	0	0	0	0	0	0	0	0	0	0
BLCA	185	140	152	111	153	0	149	0	153	54	28
BRCA	1002	903	942	0	928	526	914	0	896	408	772
CESC	163	50	126	0	134	0	116	0	134	0	39
COAD	438	424	413	69	420	153	363	0	407	331	155
COADREAD	607	592	575	104	582	222	487	0	550	461	224
DLBC	28	0	18	0	18	0	0	0	16	0	0
ESCA	63	0	50	15	50	0	0	0	0	0	0
GBM	598	574	563	0	405	542	160	491	0	214	291
HNSC	394	331	368	108	310	0	303	0	356	212	306
KICH	66	25	66	0	66	0	66	0	66	0	65
KIRC	513	502	504	0	511	72	480	0	481	454	293
KIRP	190	104	127	0	127	16	76	0	127	0	111
LAML	202	200	197	0	194	0	179	0	188	0	197
LGG	296	213	220	0	227	27	220	0	221	0	217
LIHC	141	73	108	0	109	0	69	0	96	0	0
LUAD	563	395	493	120	533	32	393	0	470	237	229
LUSC	494	351	416	0	385	154	347	0	369	195	178
OV	592	580	576	0	584	574	296	570	453	412	316
PAAD	66	26	50	0	65	0	40	0	43	0	0
PANCAN12	5675	5030	5279	549	5085	2176	4038	1061	4407	2847	3082
PRAD	215	157	187	15	198	0	176	0	187	0	83
READ	169	168	162	35	162	69	124	0	143	130	69
SARC	83	29	52	0	63	0	0	0	29	0	0
SKCM	336	211	316	119	316	0	282	0	283	164	264
STAD	308	189	307	77	308	0	209	0	286	0	221
THCA	500	424	497	96	500	0	486	0	427	224	323
UCEC	525	462	493	106	500	54	370	0	491	200	248
UCS	57	0	0	0	0	0	0	0	0	0	0
Totals	8267	6531	7403	871	7266	2219	5818	1061	6322	3235	4405