stddata__2013_06_23 Samples Summary Report

- Overview

+ Introduction

- Summary

There were 77 redacted samples, 2811 replicate aliquots, and 19 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1. Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Summary Report.

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
ACC	92	0	0	0	0	0	0	0	0	0	0
BLCA	201	146	153	111	185	0	149	0	171	127	28
BRCA	1002	916	949	0	928	526	915	0	932	408	772
CESC	163	56	129	0	163	0	116	0	134	0	39
COAD	439	424	422	69	420	153	388	0	407	331	155
COADREAD	608	592	586	104	582	222	538	0	550	461	224
DLBC	28	0	18	0	18	0	0	0	17	0	0
ESCA	63	0	50	15	63	0	0	0	12	0	0
GBM	598	576	580	0	405	542	160	491	0	214	291
HNSC	427	337	372	108	373	0	304	0	372	212	306
KICH	66	64	66	0	66	0	66	0	66	0	65
KIRC	513	502	508	0	511	72	480	0	492	454	417
KIRP	190	115	166	0	142	16	106	0	142	0	111
LAML	200	200	200	0	194	0	179	0	188	0	197
LGG	296	219	222	0	266	27	220	0	232	0	217
LIHC	141	96	110	0	125	0	84	0	96	0	0
LUAD	563	447	495	120	555	32	446	0	483	237	229
LUSC	494	371	417	0	493	154	375	0	468	195	178
OV	592	580	579	0	584	574	296	570	453	412	316
PAAD	66	39	50	0	65	0	40	0	52	0	0
PANCAN12	5723	5135	5337	549	5322	2176	4285	1061	4600	2920	3206
PRAD	235	161	188	15	198	0	176	0	194	0	83
READ	169	168	164	35	162	69	150	0	143	130	69
SARC	111	38	52	0	73	0	32	0	62	0	0
SKCM	336	243	316	119	336	0	282	0	283	164	264
STAD	308	276	308	77	308	0	274	0	308	0	221
THCA	498	466	498	95	498	0	484	0	497	222	402
UCEC	525	468	498	106	512	54	443	0	491	200	248
UCS	57	0	0	0	0	0	0	0	0	0	0
Totals	8373	6908	7510	870	7643	2219	6165	1061	6695	3306	4608

- Results

+ Sample Heatmaps

ACC

Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

BLCA

Figure 2. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

BRCA

Figure 3. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

CESC

Figure 4. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

COAD

Figure 5. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

COADREAD

Figure 6. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

DLBC

Figure 7. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

ESCA

Figure 8. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

GBM

Figure 9. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

HNSC

Figure 10. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KICH

Figure 11. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KIRC

Figure 12. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KIRP

Figure 13. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LAML

Figure 14. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LGG

Figure 15. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LIHC

Figure 16. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LUAD

Figure 17. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LUSC

Figure 18. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Figure 19. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PAAD

Figure 20. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PANCAN12

Figure 21. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PRAD

Figure 22. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

READ

Figure 23. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

SARC

Figure 24. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

SKCM

Figure 25. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

STAD

Figure 26. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

THCA

Figure 27. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

UCEC

Figure 28. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

UCS

Figure 29. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

+ Filtered Samples

+ Redactions

For TCGA data, redaction is the removal of cases from the data prior to publication or release. Redacted cases are generally rare, but cases must be redacted when the TSS/BCR subject link is incorrect ("unknown patient identity"), or in the case of genotype mismatch, completely wrong cancer, or completely wrong organ/tissue. Redaction occurs regardless of a case's analyte characterization or DCC data deposition status.

Rescission is the removal of samples from the list of redactions. This happens if the reason for redaction is eventually cleared up. For clarity, rescinded redactions do not appear in this report.

Table 2. Get Full Table

Barcode	UUID	Date	Type	Notes
TCGA-01-0629	(none)	09/02/2010	GBM	[intgen.org]: Case was of non-ovarian origin
TCGA-01-0638	(none)	09/02/2010	OV	[intgen.org]: Case was of non-ovarian origin
TCGA-02-0002	(none)	09/15/2010	GBM	[intgen.org]: Genotype mismatch
TCGA-02-0117	(none)	09/15/2010	GBM	[intgen.org]: Genotype mismatch
TCGA-02-2488	741c2eb3-db33-4a6c-9878-2587aa375134	10/27/2011	GBM	Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-06-0748	c8f21beb-e3ca-4e5e-a386-a486776cfe88	10/27/2011	GBM	Note: Scheduled for shipment in B8 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-08-0384	(none)	11/22/2010	GBM	IGC new redactions as of 11/10/2010
TCGA-13-1479	(none)	09/02/2010	OV	[intgen.org]: Case was of non-ovarian origin
TCGA-14-0784	fc52a226-9306-45d4-b608-4bdda831ad01	09/12/2011	GBM	[intgen.org]: Genotype mismatch
TCGA-14-1036	f45a2391-4c79-4269-8cdd-12a914d6c4b5	10/27/2011	GBM	Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data
TCGA-14-1824	270b9238-1567-4930-968a-a408b808ea1b	10/27/2011	GBM	Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.
TCGA-24-0981	0c3ba4c0-d7a4-421a-af38-d5019ca45e06	10/28/2010	OV	Duplicate Subject (with TCGA-04-1364)
TCGA-33-4579	1169b8c3-e5ae-47a8-91db-0ce62a5958e2	06/17/2011	LUSC	per Kenna, 6/7/2011 redact case since it does not seem to be a true primary (no definitive diagnosis of lung primary squamous).
TCGA-35-3621	b3169af9-675d-4f3e-a806-1840f4fc0eff	09/14/2010	LUAD	[intgen.org]: Genotype mismatch
TCGA-66-2746	(none)	09/02/2010	LUSC	[intgen.org]: Genotype mismatch
TCGA-66-2747	(none)	09/02/2010	LUSC	[intgen.org]: Genotype mismatch
TCGA-66-2750	(none)	09/02/2010	LUSC	[intgen.org]: Genotype mismatch
TCGA-66-2751	(none)	09/02/2010	LUSC	[intgen.org]: Genotype mismatch
TCGA-66-2752	(none)	09/02/2010	LUSC	[intgen.org]: Genotype mismatch
TCGA-A7-A0DC	cb9f5e50-f49d-4899-8895-9367afcc1015	12/14/2010	BRCA	Redaction due to incorrect type of tumor being submitted.
TCGA-AN-A0FE	e4321d99-ed3b-4fc8-b016-2ff47d93a064	10/28/2010	BRCA	Identical subject to TCGA-AN-A0FG
TCGA-AN-A0FG	51d991f6-d998-420e-9357-48736c9ea0c1	10/28/2010	BRCA	Identical subject to TCGA-AN-A0FE
TCGA-BH-A0B2	57a1604c-60b7-4b30-a75e-f70939532c5c	01/25/2011	BRCA	Normal tissue identity mismatch from Jay Bowen/NWCH
TCGA-BH-A0HL-01A-11R-A034-07	791dd985-420e-46a0-a770-ebaf0d2beaf1	01/21/2013	BRCA	RNA aliquot UUID: 791dd985-420e-46a0-a770-ebaf0d2beaf1 was incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-C4-A0F1-01A-11R-A034-07.
TCGA-BH-A0HL-01A-11R-A035-13	f42e0597-5162-4680-b3f4-bf3edee4d77a	01/21/2013	BRCA	NA
TCGA-BH-A0HN-01A-11R-A084-07	c0ccb685-0789-4559-9189-05b841173aff	01/21/2013	BRCA	RNA aliquot UUID: c0ccb685-0789-4559-9189-05b841173aff was incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-C4-A0F7-01A-11R-A084-07.
TCGA-BH-A0HN-01A-11R-A085-13	c63c6c2c-03ce-44bb-a7b8-98cbf845f8ab	01/21/2013	BRCA	NA
TCGA-BR-4186	65834878-0e8d-4741-9e4c-2316105ad40d	03/20/2012	STAD	NA
TCGA-BR-4190	282e979d-4ad9-4d42-8ffa-7487a94fa1f3	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4194	2c650fe1-48b0-4f88-bc11-04096be48571	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4195	7917234c-63be-4320-b7af-535381f99d99	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4196	c23e0eb6-e332-4a3b-9ffd-0d8f019f8ace	11/18/2011	STAD	NA
TCGA-BR-4197	4a27cbb6-754f-4a8d-8606-71af35d97279	11/18/2011	STAD	NA
TCGA-BR-4199	a73a0dc5-ac20-466b-ad11-d5cbbe9af2f7	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4200	b137efb4-35ca-4133-a2f6-490a684caa43	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4205	65f14f48-13d8-4791-9335-92bb1599eb20	06/17/2011	STAD	NA
TCGA-BR-4259	8430ea74-3ce9-4d7d-932c-e313f0069948	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4260	4d26fcfe-4bed-4245-b30a-a95b48785fd9	11/18/2011	STAD	NA
TCGA-BR-4261	5bd9831b-a70a-4519-823f-0580bc5c0c76	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4263	826ae72b-aa6f-44ae-b683-83f6e8f708e6	11/18/2011	STAD	NA
TCGA-BR-4264	c036069a-a217-433b-a5b7-f5826ddbd7fa	11/18/2011	STAD	NA
TCGA-BR-4265	6e0e2a1f-bfc3-461a-8f66-fb74e6999785	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4266	8d62ca4c-deca-46d3-8c97-c14ce34e1bf4	11/18/2011	STAD	NA
TCGA-BR-4270	6d174bec-9574-42f1-b153-706d389aa36d	11/18/2011	STAD	NA
TCGA-BR-4271	f9c581e5-7556-429f-81bd-373ede868f9c	11/18/2011	STAD	NA
TCGA-BR-4272	2e333a4c-9f9c-4bac-8451-95f1d84715c1	11/18/2011	STAD	NA
TCGA-BR-4273	7cb06aa4-a199-4076-85c7-e30dc6adccdc	11/18/2011	STAD	NA
TCGA-BR-4274	684f9ddb-6820-4a46-a122-d4465c8ad3bd	11/18/2011	STAD	NA
TCGA-BR-4276	cfe21d5f-c885-4907-b0ef-2420a91d8d30	11/18/2011	STAD	NA
TCGA-BR-4277	9be0c7cd-1747-4d04-91ff-8021ffc240a9	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4278	cd83d7f5-4f30-4ac8-b3b8-f48577aae356	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4281	5a2b30ea-e180-4228-b961-546828b50dcf	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4282	f404c64a-8b6e-4799-9a24-0ce9f7afe3d9	06/17/2011	STAD	NA
TCGA-BR-4283	c55eee70-2967-4754-aabd-534bada30a3a	03/20/2012	STAD	Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data.
TCGA-BR-4284	44486f21-3cea-4ced-a7f9-e2cb54129e21	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4285	649bbb1c-0997-4b69-bb17-c327c558fe7f	11/18/2011	STAD	NA
TCGA-BR-4286	966eed09-6f55-45df-8e51-523442e85fa4	11/18/2011	STAD	NA
TCGA-BR-4288	61d713f9-7763-4c17-9ca9-f5919cd2fb50	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4291	e4fee394-e1e2-4e67-8940-e7471e6c0bd8	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4298	82c45707-2d84-4209-9376-76c2a67a7fbb	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4375	85b38301-c8b1-4d41-bc8f-3ac5e70287b8	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-BR-4376	ea5fc9b4-cafe-4649-b024-b33f904e2e3e	11/08/2012	STAD	Site found that there was duplicate tissue in their biobank with another ID and different clinical data than that sent to TCGA. Case is being redacted but may be salvaged if the site can reconsile the correct clinical data to the tissue.
TCGA-C4-A0EZ-01A-21R-A10U-07	737d212c-43cd-4925-a6a5-568964075a0d	01/21/2013	BLCA	RNA aliquot UUID: 737d212c-43cd-4925-a6a5-568964075a0d incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-BH-A0HM-01A-11R-A10U-07. However, A0HM was redacted for unrelated reasons. The correct replacement aliquot for this UUID is tcgaBarcode: TCGA-C4-A0EZ-01A-21R-A24X-07, UUID: 8f482c29-37fe-400f-b178-224765a0c037.
TCGA-C4-A0EZ-01A-21R-A10V-13	a979613c-5f14-47e9-a153-197552c289e6	01/21/2013	BLCA	RNA aliquot UUID: a979613c-5f14-47e9-a153-197552c289e6 incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-BH-A0HM-01A-11R-A10V-13. However, A0HM was redacted for unrelated reasons. The correct replacement aliquot for this UUID is tcgaBarcode: TCGA-C4-A0EZ-01A-21R-A24Y-13, UUID: 8f2b04bd-aa6d-4394-a654-5b8b03152d09.
TCGA-C4-A0F1-01A-11R-A10U-07	(none)	01/21/2013	BLCA	RNA aliquot UUID: 1ee60bda-48df-4288-90cb-480fbfbc5d50 was incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-BH-A0HL-01A-11R-A10U-07.
TCGA-C4-A0F1-01A-11R-A10V-13	(none)	01/21/2013	BLCA	RNA aliquot UUID: 4819bd80-3cad-4071-9cbd-16eece970f4f was incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-BH-A0HL-01A-11R-A10V-13.
TCGA-C4-A0F7-01A-11R-A10U-07	(none)	01/21/2013	BLCA	RNA aliquot UUID: 6f0cf450-76f1-489d-9890-5093816c0680 was incorrectly assigned this barcode. The correct tcgaBarcode is TCGA-BH-A0HN-01A-11R-A10U-07.
TCGA-C4-A0F7-01A-11R-A10V-13	(none)	01/21/2013	BLCA	RNA aliquot UUID: 2688aaae-389f-4fe9-a198-a95fa9b3ee9b incorrectly assigned to this barcode. The correct tcgaBarcode is TCGA-BH-A0HN-01A-11R-A10V-13.
TCGA-E2-A1IP	826d8224-55fe-48c7-a5fe-ad81ac1ebba3	06/15/2011	BRCA	Tumor and normal do not match
TCGA-F4-6857	e2fca12c-1a5a-4ba7-9233-d31560fc43be	03/20/2012	COAD	Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data.
TCGA-FQ-6551	965cfb59-cce1-4318-8772-0ba76c08457b	04/23/2013	PAAD	Redacted per ticket TCGA-1304.
TCGA-FQ-6552	38dae2b5-6346-46ec-adac-d4c76d2dc19f	04/23/2013	PAAD	This participant redacted per ticket TCGA-1304.
TCGA-FQ-6553	f2db9877-ce60-42e4-8681-6734d3f8201e	04/23/2013	PRAD	This participant redacted per ticket TCGA-1304.
TCGA-FQ-6554	356323fb-27f9-41bb-bf35-f84342a800cc	04/23/2013	PAAD	This participant redacted per ticket TCGA-1304.
TCGA-FQ-6555	ce8360cf-f670-4872-a1c9-0c5325a7699d	04/23/2013	PAAD	This participant redacted per ticket TCGA-1304.
TCGA-FQ-6558	0e1dfce0-771b-456f-9ef7-0ff0d59ac153	04/23/2013	PAAD	This participant redacted per ticket TCGA-1304.
TCGA-FQ-6559	c80f9e78-ba61-46ae-9062-9472281c19cb	04/23/2013	PAAD	This participant redacted per ticket TCGA-1304.

+ Replicate Samples

In many instances there is more than one aliquot for a given combination of individual, platform, and data type. However, only one aliquot may be ingested into Firehose. Therefore, a set of precedence rules are applied to select the most scientifically advantageous one among them. Two filters are applied to achieve this aim: an Analyte Replicate Filter and a Sort Replicate Filter.

Analyte Replicate Filter

The following precedence rules are applied when the aliquots have differing analytes. For RNA aliquots, R analytes are preferred over T analytes, since it is the more accurate extraction protocol. For DNA aliquots, D analytes (native DNA) are preferred over G, W, or X (whole-genome amplified) analytes, unless the G, W, or X analyte barcode has a higher plate number.

Sort Replicate Filter

The following precedence rules are applied when the analyte filter still produces more than one sample. The sort filter chooses the aliquot with the highest lexicographical sort value, to ensure that the barcode with the highest portion and/or plate number is selected when all other barcode fields are identical.

Table 3. Get Full Table Click on any filtered samples count to display a table detailing the filtered samples for the associated tumor type.

Tumor Type	Filtered Samples Count
BLCA	3
BRCA	49
COAD	436
DLBC	18
GBM	814
HNSC	18
KIRC	697
KIRP	133
LUAD	137
LUSC	210
OV	206
PRAD	28
READ	58
UCEC	4

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-BL-A13J	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BL-A13J-01A-11D-A10W-05,TCGA-BL-A13J-01A-11D-A276-05	TCGA-BL-A13J-01B-04D-A276-05
TCGA-BL-A0C8	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BL-A0C8-01A-11D-A276-05,TCGA-BL-A0C8-01A-11D-A10W-05	TCGA-BL-A0C8-01B-04D-A276-05
TCGA-BL-A13I	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BL-A13I-01A-11D-A276-05,TCGA-BL-A13I-01A-11D-A13Z-05	TCGA-BL-A13I-01B-04D-A276-05

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-AC-A3QQ	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AC-A3QQ-01A-11R-A22I-13	TCGA-AC-A3QQ-01B-06R-A22P-13
TCGA-A7-A26F	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21R-A168-13	TCGA-A7-A26F-01B-04R-A22P-13
TCGA-A7-A13G	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11R-A13P-13	TCGA-A7-A13G-01B-04R-A22P-13
TCGA-A7-A26I	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A7-A26I-01A-11R-A168-13	TCGA-A7-A26I-01B-06R-A22P-13
TCGA-B6-A1KC	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11R-A13P-13	TCGA-B6-A1KC-01B-11R-A156-13
TCGA-AC-A2QH	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11R-A18L-13	TCGA-AC-A2QH-01B-04R-A22P-13
TCGA-AC-A3OD	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11R-A21U-13	TCGA-AC-A3OD-01B-06R-A22P-13
TCGA-AC-A3QQ	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AC-A3QQ-01A-11R-A22I-13	TCGA-AC-A3QQ-01B-06R-A22P-13
TCGA-A7-A26F	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21R-A168-13	TCGA-A7-A26F-01B-04R-A22P-13
TCGA-A7-A13G	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11R-A13P-13	TCGA-A7-A13G-01B-04R-A22P-13
TCGA-A7-A26I	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A7-A26I-01A-11R-A168-13	TCGA-A7-A26I-01B-06R-A22P-13
TCGA-B6-A1KC	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11R-A13P-13	TCGA-B6-A1KC-01B-11R-A156-13
TCGA-AC-A2QH	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11R-A18L-13	TCGA-AC-A2QH-01B-04R-A22P-13
TCGA-AC-A3OD	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11R-A21U-13	TCGA-AC-A3OD-01B-06R-A22P-13
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-A7-A13G	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11D-A13J-01	TCGA-A7-A13G-01B-04D-A22Q-01
TCGA-AC-A3OD	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11D-A21P-01	TCGA-AC-A3OD-01B-06D-A22Q-01
TCGA-A7-A26F	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21D-A166-01	TCGA-A7-A26F-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-AC-A2QH	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11D-A18N-01	TCGA-AC-A2QH-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-A7-A13G	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11D-A13J-01	TCGA-A7-A13G-01B-04D-A22Q-01
TCGA-AC-A3OD	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11D-A21P-01	TCGA-AC-A3OD-01B-06D-A22Q-01
TCGA-A7-A26F	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21D-A166-01	TCGA-A7-A26F-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-AC-A2QH	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11D-A18N-01	TCGA-AC-A2QH-01B-04D-A22Q-01
TCGA-A7-A13G	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A7-A13G-01A-11D-A13J-01	TCGA-A7-A13G-01B-04D-A22Q-01
TCGA-AC-A3OD	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11D-A21P-01	TCGA-AC-A3OD-01B-06D-A22Q-01
TCGA-A7-A26F	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A7-A26F-01A-21D-A166-01	TCGA-A7-A26F-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-AC-A2QH	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11D-A18N-01	TCGA-AC-A2QH-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-A7-A26F	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21D-A16A-05	TCGA-A7-A26F-01B-04D-A22R-05
TCGA-A7-A13G	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11D-A13K-05	TCGA-A7-A13G-01B-04D-A22R-05
TCGA-B6-A1KC	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13K-05	TCGA-B6-A1KC-01B-11D-A161-05
TCGA-AC-A2QH	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11D-A18O-05	TCGA-AC-A2QH-01B-04D-A22R-05
TCGA-AC-A3OD	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11D-A21R-05	TCGA-AC-A3OD-01B-06D-A22R-05
TCGA-A7-A13G	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A7-A13G-01A-11D-A13J-01	TCGA-A7-A13G-01B-04D-A22Q-01
TCGA-AC-A3OD	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AC-A3OD-01A-11D-A21P-01	TCGA-AC-A3OD-01B-06D-A22Q-01
TCGA-A7-A26F	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A7-A26F-01A-21D-A166-01	TCGA-A7-A26F-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-AC-A2QH	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AC-A2QH-01A-11D-A18N-01	TCGA-AC-A2QH-01B-04D-A22Q-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01
TCGA-B6-A1KC	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B6-A1KC-01A-11D-A13J-01	TCGA-B6-A1KC-01B-11D-A160-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-1549-01,TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01B-03D-2297-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-5665	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-5665-01A-01D-1649-01	TCGA-A6-5665-01B-03D-2297-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-A6-5661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-5661-01A-01D-1649-01	TCGA-A6-5661-01B-05D-2297-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-A6-5661	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01T-1652-13	TCGA-A6-5661-01B-05R-2303-13
TCGA-A6-5665	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01T-1652-13	TCGA-A6-5665-01B-03R-2303-13
TCGA-A6-5661	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01D-1651-05	TCGA-A6-5661-01B-05D-2299-05
TCGA-A6-3810	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-3810-01A-01D-A27A-05	TCGA-A6-3810-01B-04D-A27A-05
TCGA-A6-3809	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-3809-01A-01D-A27A-05	TCGA-A6-3809-01B-04D-A27A-05
TCGA-A6-2684	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-2684-01A-01D-1407-05,TCGA-A6-2684-01A-01D-A27A-05	TCGA-A6-2684-01C-08D-A27A-05
TCGA-A6-6650	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-6650-01A-11D-A27A-05,TCGA-A6-6650-01A-11D-1772-05	TCGA-A6-6650-01B-02D-A27A-05
TCGA-A6-2677	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-2677-01A-01D-A27A-05	TCGA-A6-2677-01B-02D-A27A-05
TCGA-A6-5665	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01D-1651-05	TCGA-A6-5665-01B-03D-2299-05
TCGA-A6-5659	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-A6-5659-01A-01D-A27A-05,TCGA-A6-5659-01A-01D-1651-05	TCGA-A6-5659-01B-04D-A27A-05
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-1549-01,TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01B-03D-2297-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-5665	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01D-1649-01	TCGA-A6-5665-01B-03D-2297-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-A6-5661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01D-1649-01	TCGA-A6-5661-01B-05D-2297-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-1549-01,TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01B-03D-2297-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-5665	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01D-1649-01	TCGA-A6-5665-01B-03D-2297-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-A6-5661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01D-1649-01	TCGA-A6-5661-01B-05D-2297-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-A6-5661	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01T-1652-13	TCGA-A6-5661-01B-05R-2303-13
TCGA-A6-5665	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01T-1652-13	TCGA-A6-5665-01B-03R-2303-13
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-1549-01,TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01B-03D-2297-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-A6-5665	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-5665-01A-01D-1649-01	TCGA-A6-5665-01B-03D-2297-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-A6-5661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-5661-01A-01D-1649-01	TCGA-A6-5661-01B-05D-2297-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01
TCGA-A6-2682	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2682-01A-01D-1406-01	TCGA-A6-2682-01A-01D-1549-01
TCGA-AA-3521	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3521-01A-01D-0819-01	TCGA-AA-3521-01A-01D-1549-01
TCGA-A6-2685	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2685-01A-01D-1406-01	TCGA-A6-2685-01A-01D-1549-01
TCGA-A6-2672	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2672-01A-01D-0824-01	TCGA-A6-2672-01A-01D-1549-01
TCGA-A6-4107	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-4107-01A-02D-1406-01	TCGA-A6-4107-01A-02D-1549-01
TCGA-AA-3532	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3532-01A-01D-0819-01	TCGA-AA-3532-01A-01D-1549-01
TCGA-A6-2678	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2678-01A-01D-0819-01	TCGA-A6-2678-01A-01D-1549-01
TCGA-AA-3534	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3534-01A-01D-0819-01	TCGA-AA-3534-01A-01D-1549-01
TCGA-AA-3526	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3526-01A-02D-0819-01	TCGA-AA-3526-01A-02D-1549-01
TCGA-A6-2681	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2681-01A-01D-1406-01	TCGA-A6-2681-01A-01D-1549-01
TCGA-A6-2679	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2679-01A-02D-1406-01	TCGA-A6-2679-01A-02D-1549-01
TCGA-A6-2680	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2680-01A-01D-1406-01	TCGA-A6-2680-01A-01D-1549-01
TCGA-A6-2686	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2686-01A-01D-1406-01	TCGA-A6-2686-01A-01D-1549-01
TCGA-AA-3519	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3519-01A-02D-0819-01	TCGA-AA-3519-01A-02D-1549-01
TCGA-AA-3525	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3525-01A-02D-0824-01	TCGA-AA-3525-01A-02D-1549-01
TCGA-AA-3520	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3520-01A-01D-0819-01	TCGA-AA-3520-01A-01D-1549-01
TCGA-A6-2677	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2677-01A-01D-0819-01	TCGA-A6-2677-01A-01D-1549-01
TCGA-A6-2676	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2676-01A-01D-0824-01	TCGA-A6-2676-01A-01D-1549-01
TCGA-A6-2684	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2684-01A-01D-1406-01	TCGA-A6-2684-01A-01D-1549-01
TCGA-AA-3529	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3529-01A-02D-0819-01	TCGA-AA-3529-01A-02D-1549-01
TCGA-AA-3527	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3527-01A-01D-0819-01	TCGA-AA-3527-01A-01D-1549-01
TCGA-AA-3524	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3524-01A-02D-0819-01	TCGA-AA-3524-01A-02D-1549-01
TCGA-AA-3531	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3531-01A-01D-0819-01	TCGA-AA-3531-01A-01D-1549-01
TCGA-A6-2671	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2671-01A-01D-1406-01	TCGA-A6-2671-01A-01D-1549-01
TCGA-AA-3518	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3518-01A-02D-0824-01	TCGA-AA-3518-01A-02D-1549-01
TCGA-AA-3517	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3517-01A-01D-0819-01	TCGA-AA-3517-01A-01D-1549-01
TCGA-AA-3530	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3530-01A-01D-1018-01	TCGA-AA-3530-01A-01D-1549-01
TCGA-A6-2674	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2674-01A-02D-0819-01	TCGA-A6-2674-01A-02D-1549-01
TCGA-AA-3516	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3516-01A-02D-0824-01	TCGA-AA-3516-01A-02D-1549-01
TCGA-AA-3514	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3514-01A-02D-0819-01	TCGA-AA-3514-01A-02D-1549-01
TCGA-A6-2683	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A6-2683-01A-01D-0819-01	TCGA-A6-2683-01A-01D-1549-01
TCGA-AA-3522	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AA-3522-01A-01D-0819-01	TCGA-AA-3522-01A-01D-1549-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01
TCGA-GS-6633	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-GS-6633-10A-01D-1782-01	TCGA-GS-6633-10B-01D-1782-01
TCGA-GS-6634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-GS-6634-10A-01D-1782-01	TCGA-GS-6634-10B-01D-1782-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0147	snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0216-06	TCGA-06-0147-10A-01D-0241-06
TCGA-06-0148	snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0216-06	TCGA-06-0148-10A-01D-0241-06
TCGA-06-0147	snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0216-06	TCGA-06-0147-10A-01D-0241-06
TCGA-06-0148	snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0216-06	TCGA-06-0148-10A-01D-0241-06
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0145	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0145-01A-01D-0214-01,TCGA-06-0145-01A-02D-0214-01,TCGA-06-0145-01A-03D-0214-01,TCGA-06-0145-01A-04D-0214-01,TCGA-06-0145-01A-05D-0214-01	TCGA-06-0145-01A-06D-0214-01
TCGA-06-0208	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0236-01	TCGA-06-0208-01B-01D-0236-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0137	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0214-01,TCGA-06-0137-01A-02D-0214-01,TCGA-06-0137-01A-03D-0214-01	TCGA-06-0137-01B-02D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0138	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0138-01A-01R-0229-07	TCGA-06-0138-01A-02R-0229-07
TCGA-06-0147	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Analyte Replicate Filter	TCGA-06-0147-01A-01R-0213-07	TCGA-06-0147-01A-02R-0229-07
TCGA-06-0210	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0210-01A-01R-0229-07	TCGA-06-0210-01B-01R-0229-07
TCGA-06-0211	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0211-01A-01R-0229-07	TCGA-06-0211-01B-01R-0229-07
TCGA-06-0148	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0148-01A-04R-0229-07,TCGA-06-0148-01A-03R-0229-07,TCGA-06-0148-01A-01R-0213-07	TCGA-06-0148-01A-05R-0229-07
TCGA-06-0145	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0145-01A-02R-0213-07,TCGA-06-0145-01A-03R-0213-07,TCGA-06-0145-01A-01R-0213-07,TCGA-06-0145-01A-05R-0213-07,TCGA-06-0145-01A-04R-0213-07	TCGA-06-0145-01A-06R-0213-07
TCGA-06-0208	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0208-01A-01R-0229-07	TCGA-06-0208-01B-01R-0229-07
TCGA-06-0154	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0154-01A-02R-0229-07	TCGA-06-0154-01A-03R-0229-07
TCGA-06-0176	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0176-01A-02R-0229-07	TCGA-06-0176-01A-03R-0229-07
TCGA-06-0168	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0168-01A-01R-0229-07	TCGA-06-0168-01A-02R-0229-07
TCGA-06-0156	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0156-01A-02R-0229-07,TCGA-06-0156-01A-01R-0229-07	TCGA-06-0156-01A-03R-0229-07
TCGA-06-0137	transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-06-0137-01A-02R-0213-07,TCGA-06-0137-01A-01R-0213-07,TCGA-06-0137-01A-03R-0213-07	TCGA-06-0137-01B-02R-0213-07
TCGA-06-0138	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0242-05	TCGA-06-0138-01A-02D-0242-05
TCGA-06-0168	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0242-05	TCGA-06-0168-01A-02D-0242-05
TCGA-06-0147	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0218-05	TCGA-06-0147-01A-02D-0242-05
TCGA-06-0210	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0242-05	TCGA-06-0210-01B-01D-0242-05
TCGA-06-0211	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0242-05	TCGA-06-0211-01B-01D-0242-05
TCGA-06-0148	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0148-01A-04D-0242-05,TCGA-06-0148-01A-01D-0218-05,TCGA-06-0148-01A-03D-0242-05	TCGA-06-0148-01A-05D-0242-05
TCGA-06-0156	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0156-01A-01D-0242-05,TCGA-06-0156-01A-02D-0242-05	TCGA-06-0156-01A-03D-0242-05
TCGA-06-0145	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0218-05,TCGA-06-0145-01A-04D-0218-05,TCGA-06-0145-01A-02D-0218-05,TCGA-06-0145-01A-03D-0218-05,TCGA-06-0145-01A-01D-0218-05	TCGA-06-0145-01A-06D-0218-05
TCGA-06-0208	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0242-05	TCGA-06-0208-01B-01D-0242-05
TCGA-06-0216	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0242-05	TCGA-06-0216-01B-01D-0337-05
TCGA-06-0154	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0242-05	TCGA-06-0154-01A-03D-0242-05
TCGA-06-0176	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0242-05	TCGA-06-0176-01A-03D-0242-05
TCGA-06-0137	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_1__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0137-01A-03D-0218-05,TCGA-06-0137-01A-02D-0218-05,TCGA-06-0137-01A-01D-0218-05	TCGA-06-0137-01B-02D-0218-05
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0145	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0214-01,TCGA-06-0145-01A-01D-0214-01,TCGA-06-0145-01A-02D-0214-01,TCGA-06-0145-01A-03D-0214-01,TCGA-06-0145-01A-04D-0214-01	TCGA-06-0145-01A-06D-0214-01
TCGA-06-0208	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0236-01	TCGA-06-0208-01B-01D-0236-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0137	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0214-01,TCGA-06-0137-01A-02D-0214-01,TCGA-06-0137-01A-03D-0214-01	TCGA-06-0137-01B-02D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0214-01	TCGA-06-0148-10A-01D-0237-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0215-04	TCGA-06-0147-10A-01D-0239-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0239-04	TCGA-06-0216-10A-01D-0334-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0215-04	TCGA-06-0148-10A-01D-0239-04
TCGA-08-0350	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0350-01A-01G-0294-04	TCGA-08-0350-01A-01D-0304-04
TCGA-06-0211	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0238-04	TCGA-06-0211-01B-01D-0238-04
TCGA-06-0156	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0156-01A-01D-0238-04,TCGA-06-0156-01A-02D-0238-04	TCGA-06-0156-01A-03D-0238-04
TCGA-06-0145	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0145-01A-01D-0215-04,TCGA-06-0145-01A-02D-0215-04,TCGA-06-0145-01A-03D-0215-04,TCGA-06-0145-01A-04D-0215-04,TCGA-06-0145-01A-05D-0215-04	TCGA-06-0145-01A-06D-0215-04
TCGA-06-0208	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0238-04	TCGA-06-0208-01B-01D-0238-04
TCGA-08-0354	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0354-01A-01G-0294-04	TCGA-08-0354-01A-01D-0304-04
TCGA-08-0380	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0380-01A-01G-0294-04	TCGA-08-0380-01A-01D-0304-04
TCGA-06-0176	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0238-04	TCGA-06-0176-01A-03D-0238-04
TCGA-06-0168	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0238-04	TCGA-06-0168-01A-02D-0238-04
TCGA-08-0375	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0375-01A-01G-0294-04	TCGA-08-0375-01A-01D-0304-04
TCGA-06-0137	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0215-04,TCGA-06-0137-01A-02D-0215-04,TCGA-06-0137-01A-03D-0215-04	TCGA-06-0137-01B-02D-0215-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0148-01A-01D-0215-04,TCGA-06-0148-01A-03D-0238-04,TCGA-06-0148-01A-04D-0238-04	TCGA-06-0148-01A-05D-0238-04
TCGA-08-0344	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0344-01A-01G-0294-04	TCGA-08-0344-01A-01D-0304-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0238-04	TCGA-06-0216-01B-01D-0334-04
TCGA-06-0139	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0215-04	TCGA-06-0139-01B-05D-0215-04
TCGA-06-0138	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0238-04	TCGA-06-0138-01A-02D-0238-04
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0215-04	TCGA-06-0147-01A-02D-0238-04
TCGA-06-0210	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0238-04	TCGA-06-0210-01B-01D-0238-04
TCGA-08-0351	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-08-0351-01A-01G-0294-04	TCGA-08-0351-01A-01D-0304-04
TCGA-06-0154	cna__hg_cgh_244a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0238-04	TCGA-06-0154-01A-03D-0238-04
TCGA-06-0138	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0242-05	TCGA-06-0138-01A-02D-0242-05
TCGA-06-0168	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0242-05	TCGA-06-0168-01A-02D-0242-05
TCGA-06-0147	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0218-05	TCGA-06-0147-01A-02D-0242-05
TCGA-06-0210	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0242-05	TCGA-06-0210-01B-01D-0242-05
TCGA-06-0211	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0242-05	TCGA-06-0211-01B-01D-0242-05
TCGA-06-0148	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0148-01A-04D-0242-05,TCGA-06-0148-01A-01D-0218-05,TCGA-06-0148-01A-03D-0242-05	TCGA-06-0148-01A-05D-0242-05
TCGA-06-0156	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0156-01A-01D-0242-05,TCGA-06-0156-01A-02D-0242-05	TCGA-06-0156-01A-03D-0242-05
TCGA-06-0145	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0218-05,TCGA-06-0145-01A-04D-0218-05,TCGA-06-0145-01A-02D-0218-05,TCGA-06-0145-01A-03D-0218-05,TCGA-06-0145-01A-01D-0218-05	TCGA-06-0145-01A-06D-0218-05
TCGA-06-0208	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0242-05	TCGA-06-0208-01B-01D-0242-05
TCGA-06-0216	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0242-05	TCGA-06-0216-01B-01D-0337-05
TCGA-06-0154	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0242-05	TCGA-06-0154-01A-03D-0242-05
TCGA-06-0176	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0242-05	TCGA-06-0176-01A-03D-0242-05
TCGA-06-0137	methylation__illuminadnamethylation_oma002_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0137-01A-03D-0218-05,TCGA-06-0137-01A-02D-0218-05,TCGA-06-0137-01A-01D-0218-05	TCGA-06-0137-01B-02D-0218-05
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-06-0168	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0240-06	TCGA-06-0168-01A-02D-0240-06
TCGA-06-0147	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0216-06	TCGA-06-0147-10A-01D-0241-06
TCGA-06-0148	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0216-06	TCGA-06-0148-10A-01D-0241-06
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0145	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0216-06,TCGA-06-0145-01A-02D-0216-06,TCGA-06-0145-01A-04D-0216-06,TCGA-06-0145-01A-01D-0216-06,TCGA-06-0145-01A-03D-0216-06	TCGA-06-0145-01A-06D-0216-06
TCGA-06-0176	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0240-06	TCGA-06-0176-01A-03D-0240-06
TCGA-06-0137	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0137-01A-02D-0216-06,TCGA-06-0137-01A-01D-0216-06,TCGA-06-0137-01A-03D-0216-06	TCGA-06-0137-01B-02D-0216-06
TCGA-06-0216	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0241-06	TCGA-06-0216-10A-01D-0335-06
TCGA-06-0148	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0148-01A-01D-0216-06,TCGA-06-0148-01A-03D-0240-06,TCGA-06-0148-01A-04D-0240-06	TCGA-06-0148-01A-05D-0240-06
TCGA-06-0216	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0240-06	TCGA-06-0216-01B-01D-0335-06
TCGA-06-0154	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0240-06	TCGA-06-0154-01A-03D-0240-06
TCGA-06-0156	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0156-01A-02D-0240-06,TCGA-06-0156-01A-01D-0240-06	TCGA-06-0156-01A-03D-0240-06
TCGA-06-0138	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0240-06	TCGA-06-0138-01A-02D-0240-06
TCGA-06-0147	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0216-06	TCGA-06-0147-01A-02D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0215-04	TCGA-06-0147-10A-01D-0239-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0239-04	TCGA-06-0216-10A-01D-0334-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0215-04	TCGA-06-0148-10A-01D-0239-04
TCGA-08-0350	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0350-01A-01G-0294-04	TCGA-08-0350-01A-01D-0304-04
TCGA-06-0211	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0238-04	TCGA-06-0211-01B-01D-0238-04
TCGA-06-0156	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0156-01A-01D-0238-04,TCGA-06-0156-01A-02D-0238-04	TCGA-06-0156-01A-03D-0238-04
TCGA-06-0145	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0145-01A-01D-0215-04,TCGA-06-0145-01A-02D-0215-04,TCGA-06-0145-01A-03D-0215-04,TCGA-06-0145-01A-04D-0215-04,TCGA-06-0145-01A-05D-0215-04	TCGA-06-0145-01A-06D-0215-04
TCGA-06-0208	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0208-01A-01D-0238-04	TCGA-06-0208-01B-01D-0238-04
TCGA-08-0354	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0354-01A-01G-0294-04	TCGA-08-0354-01A-01D-0304-04
TCGA-08-0380	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0380-01A-01G-0294-04	TCGA-08-0380-01A-01D-0304-04
TCGA-06-0176	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0176-01A-02D-0238-04	TCGA-06-0176-01A-03D-0238-04
TCGA-06-0168	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0168-01A-01D-0238-04	TCGA-06-0168-01A-02D-0238-04
TCGA-08-0375	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0375-01A-01G-0294-04	TCGA-08-0375-01A-01D-0304-04
TCGA-06-0137	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0137-01A-01D-0215-04,TCGA-06-0137-01A-02D-0215-04,TCGA-06-0137-01A-03D-0215-04	TCGA-06-0137-01B-02D-0215-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0148-01A-01D-0215-04,TCGA-06-0148-01A-03D-0238-04,TCGA-06-0148-01A-04D-0238-04	TCGA-06-0148-01A-05D-0238-04
TCGA-08-0344	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0344-01A-01G-0294-04	TCGA-08-0344-01A-01D-0304-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0238-04	TCGA-06-0216-01B-01D-0334-04
TCGA-06-0139	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0139-01A-01D-0215-04	TCGA-06-0139-01B-05D-0215-04
TCGA-06-0138	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0138-01A-01D-0238-04	TCGA-06-0138-01A-02D-0238-04
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0215-04	TCGA-06-0147-01A-02D-0238-04
TCGA-06-0210	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0238-04	TCGA-06-0210-01B-01D-0238-04
TCGA-08-0351	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-08-0351-01A-01G-0294-04	TCGA-08-0351-01A-01D-0304-04
TCGA-06-0154	cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-06-0154-01A-02D-0238-04	TCGA-06-0154-01A-03D-0238-04
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0145	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0145-01A-01D-0214-01,TCGA-06-0145-01A-02D-0214-01,TCGA-06-0145-01A-03D-0214-01,TCGA-06-0145-01A-04D-0214-01,TCGA-06-0145-01A-05D-0214-01	TCGA-06-0145-01A-06D-0214-01
TCGA-06-0208	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0236-01	TCGA-06-0208-01B-01D-0236-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0137	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0214-01,TCGA-06-0137-01A-02D-0214-01,TCGA-06-0137-01A-03D-0214-01	TCGA-06-0137-01B-02D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0145	methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0218-05,TCGA-06-0145-01A-04D-0218-05,TCGA-06-0145-01A-02D-0218-05,TCGA-06-0145-01A-03D-0218-05,TCGA-06-0145-01A-01D-0218-05	TCGA-06-0145-01A-06D-0218-05
TCGA-06-0137	methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0137-01A-03D-0218-05,TCGA-06-0137-01A-02D-0218-05,TCGA-06-0137-01A-01D-0218-05	TCGA-06-0137-01B-02D-0218-05
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0211	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0211-01A-01R-0233-01	TCGA-06-0211-01B-01R-0233-01
TCGA-06-0145	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0145-01A-02R-0219-01,TCGA-06-0145-01A-04R-0219-01,TCGA-06-0145-01A-03R-0219-01,TCGA-06-0145-01A-05R-0219-01,TCGA-06-0145-01A-01R-0219-01	TCGA-06-0145-01A-06R-0219-01
TCGA-06-0208	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0208-01A-01R-0233-01	TCGA-06-0208-01B-01R-0233-01
TCGA-06-0176	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0176-01A-02R-0233-01	TCGA-06-0176-01A-03R-0233-01
TCGA-06-0137	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0137-01A-02R-0219-01,TCGA-06-0137-01A-01R-0219-01,TCGA-06-0137-01A-03R-0219-01	TCGA-06-0137-01B-02R-0219-01
TCGA-06-0148	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0148-01A-01R-0219-01,TCGA-06-0148-01A-03R-0233-01,TCGA-06-0148-01A-04R-0233-01	TCGA-06-0148-01A-05R-0233-01
TCGA-06-0154	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0154-01A-02R-0233-01	TCGA-06-0154-01A-03R-0233-01
TCGA-06-0156	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0156-01A-02R-0233-01,TCGA-06-0156-01A-01R-0233-01	TCGA-06-0156-01A-03R-0233-01
TCGA-06-0138	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0138-01A-01R-0233-01	TCGA-06-0138-01A-02R-0233-01
TCGA-06-0168	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-06-0168-01A-01R-0233-01	TCGA-06-0168-01A-02R-0233-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0289-01	TCGA-06-0122-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0145	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0145-01A-01D-0214-01,TCGA-06-0145-01A-02D-0214-01,TCGA-06-0145-01A-03D-0214-01,TCGA-06-0145-01A-04D-0214-01,TCGA-06-0145-01A-05D-0214-01	TCGA-06-0145-01A-06D-0214-01
TCGA-06-0208	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0236-01	TCGA-06-0208-01B-01D-0236-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0137	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0214-01,TCGA-06-0137-01A-02D-0214-01,TCGA-06-0137-01A-03D-0214-01	TCGA-06-0137-01B-02D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0289-01	TCGA-06-0129-01A-01D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-06-0129	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0288-02	TCGA-06-0129-10A-01D-0217-02
TCGA-06-0168	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0168-01A-01D-0234-02	TCGA-06-0168-01A-02D-0234-02
TCGA-06-0141	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0288-02	TCGA-06-0141-10A-01D-0217-02
TCGA-06-0126	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0288-02	TCGA-06-0126-01A-01D-0217-02
TCGA-06-0143	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0288-02	TCGA-06-0143-10A-01D-0217-02
TCGA-06-0128	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0288-02	TCGA-06-0128-10A-01D-0217-02
TCGA-06-0166	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0288-02	TCGA-06-0166-01A-01D-0234-02
TCGA-06-0122	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0122-10A-01G-0288-02	TCGA-06-0122-10A-01D-0217-02
TCGA-06-0126	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0288-02	TCGA-06-0126-10A-01D-0217-02
TCGA-06-0124	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0288-02	TCGA-06-0124-10A-01D-0217-02
TCGA-06-0130	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0288-02	TCGA-06-0130-01A-01D-0217-02
TCGA-06-0125	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0288-02	TCGA-06-0125-10A-01D-0217-02
TCGA-06-0129	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0129-01A-01G-0288-02	TCGA-06-0129-01A-01D-0217-02
TCGA-06-0148	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0217-02	TCGA-06-0148-10A-01D-0235-02
TCGA-06-0128	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0288-02	TCGA-06-0128-01A-01D-0217-02
TCGA-06-0166	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0166-10A-01G-0288-02	TCGA-06-0166-10A-01D-0235-02
TCGA-06-0211	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0234-02	TCGA-06-0211-01B-01D-0234-02
TCGA-06-0143	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0288-02	TCGA-06-0143-01A-01D-0271-02
TCGA-06-0145	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0145-01A-04D-0217-02,TCGA-06-0145-01A-05D-0217-02,TCGA-06-0145-01A-03D-0217-02,TCGA-06-0145-01A-01D-0217-02,TCGA-06-0145-01A-02D-0217-02	TCGA-06-0145-01A-06D-0217-02
TCGA-06-0208	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0208-01A-01D-0234-02	TCGA-06-0208-01B-01D-0234-02
TCGA-06-0141	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0288-02	TCGA-06-0141-01A-01D-0217-02
TCGA-06-0176	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0176-01A-02D-0234-02	TCGA-06-0176-01A-03D-0234-02
TCGA-06-0137	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0137-01A-02D-0217-02,TCGA-06-0137-01A-03D-0217-02,TCGA-06-0137-01A-01D-0217-02	TCGA-06-0137-01B-02D-0217-02
TCGA-06-0216	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0235-02	TCGA-06-0216-10A-01D-0336-02
TCGA-06-0125	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0288-02	TCGA-06-0125-01A-01D-0217-02
TCGA-06-0122	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0288-02	TCGA-06-0122-01A-01D-0217-02
TCGA-06-0148	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0148-01A-03D-0234-02,TCGA-06-0148-01A-04D-0234-02,TCGA-06-0148-01A-01D-0217-02	TCGA-06-0148-01A-05D-0234-02
TCGA-06-0216	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0234-02	TCGA-06-0216-01B-01D-0336-02
TCGA-06-0154	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0154-01A-02D-0234-02	TCGA-06-0154-01A-03D-0234-02
TCGA-06-0156	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0156-01A-02D-0234-02,TCGA-06-0156-01A-01D-0234-02	TCGA-06-0156-01A-03D-0234-02
TCGA-06-0138	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-06-0138-01A-01D-0234-02	TCGA-06-0138-01A-02D-0234-02
TCGA-06-0147	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0217-02	TCGA-06-0147-01A-02D-0234-02
TCGA-06-0210	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0210-01B-01D-0234-02	TCGA-06-0210-01A-01D-0271-02
TCGA-06-0130	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0288-02	TCGA-06-0130-10A-01D-0217-02
TCGA-06-0124	cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0288-02	TCGA-06-0124-01A-01D-0217-02
TCGA-06-0211	snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0240-06	TCGA-06-0211-01B-01D-0240-06
TCGA-06-0208	snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	Sort Replicate Filter	TCGA-06-0208-01A-01D-0240-06	TCGA-06-0208-01B-01D-0240-06
TCGA-06-0210	snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0240-06	TCGA-06-0210-01B-01D-0240-06
TCGA-19-1788	mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-19-1788-01A-01T-0599-07	TCGA-19-1788-01A-01T-0656-07
TCGA-26-1799	mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-26-1799-01A-02T-0599-07	TCGA-26-1799-01A-02T-0656-07
TCGA-28-1751	mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-28-1751-01A-02T-0599-07	TCGA-28-1751-01A-02T-0675-07
TCGA-27-1833	mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-27-1833-01A-01T-0599-07	TCGA-27-1833-01A-01T-0656-07
TCGA-14-1825	mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-14-1825-01A-01T-0599-07	TCGA-14-1825-01A-01T-0656-07
TCGA-06-0168	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0242-05	TCGA-06-0168-01A-02D-0242-05
TCGA-06-0147	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0218-05	TCGA-06-0147-01A-02D-0242-05
TCGA-06-0210	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0242-05	TCGA-06-0210-01B-01D-0242-05
TCGA-06-0211	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0242-05	TCGA-06-0211-01B-01D-0242-05
TCGA-06-0148	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0148-01A-04D-0242-05,TCGA-06-0148-01A-01D-0218-05,TCGA-06-0148-01A-03D-0242-05	TCGA-06-0148-01A-05D-0242-05
TCGA-06-0138	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0242-05	TCGA-06-0138-01A-02D-0242-05
TCGA-06-0156	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0156-01A-01D-0242-05,TCGA-06-0156-01A-02D-0242-05	TCGA-06-0156-01A-03D-0242-05
TCGA-06-0145	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0145-01A-05D-0218-05,TCGA-06-0145-01A-04D-0218-05,TCGA-06-0145-01A-02D-0218-05,TCGA-06-0145-01A-03D-0218-05,TCGA-06-0145-01A-01D-0218-05	TCGA-06-0145-01A-06D-0218-05
TCGA-06-0208	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0242-05	TCGA-06-0208-01B-01D-0242-05
TCGA-06-0216	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0242-05	TCGA-06-0216-01B-01D-0337-05
TCGA-06-0154	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0242-05	TCGA-06-0154-01A-03D-0242-05
TCGA-06-0176	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0242-05	TCGA-06-0176-01A-03D-0242-05
TCGA-06-0137	methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-06-0137-01A-03D-0218-05,TCGA-06-0137-01A-02D-0218-05,TCGA-06-0137-01A-01D-0218-05	TCGA-06-0137-01B-02D-0218-05
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0125-01A-01G-0289-01	TCGA-06-0125-01A-01D-0214-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0141-01A-01G-0289-01	TCGA-06-0141-01A-01D-0214-01
TCGA-06-0122	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0122-01A-01G-0289-01	TCGA-06-0122-01A-01D-0214-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0236-01	TCGA-06-0216-01B-01D-0333-01
TCGA-06-0139	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0139-01A-01D-0214-01	TCGA-06-0139-01B-05D-0214-01
TCGA-06-0138	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0138-01A-01D-0236-01	TCGA-06-0138-01A-02D-0236-01
TCGA-06-0168	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0168-01A-01D-0236-01	TCGA-06-0168-01A-02D-0236-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0214-01	TCGA-06-0147-01A-02D-0236-01
TCGA-06-0210	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-06-0210-01A-01D-0236-01	TCGA-06-0210-01B-01D-0236-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0130-10A-01G-0289-01	TCGA-06-0130-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0124-01A-01G-0289-01	TCGA-06-0124-01A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-06-0128-01A-01G-0289-01	TCGA-06-0128-01A-01D-0214-01
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0215-04	TCGA-06-0147-10A-01D-0239-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0239-04	TCGA-06-0216-10A-01D-0334-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-06-0148-10A-01D-0215-04	TCGA-06-0148-10A-01D-0239-04
TCGA-08-0350	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0350-01A-01G-0294-04	TCGA-08-0350-01A-01D-0304-04
TCGA-06-0211	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0238-04	TCGA-06-0211-01B-01D-0238-04
TCGA-06-0156	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0156-01A-01D-0238-04,TCGA-06-0156-01A-02D-0238-04	TCGA-06-0156-01A-03D-0238-04
TCGA-06-0145	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0145-01A-01D-0215-04,TCGA-06-0145-01A-02D-0215-04,TCGA-06-0145-01A-03D-0215-04,TCGA-06-0145-01A-04D-0215-04,TCGA-06-0145-01A-05D-0215-04	TCGA-06-0145-01A-06D-0215-04
TCGA-06-0208	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0208-01A-01D-0238-04	TCGA-06-0208-01B-01D-0238-04
TCGA-08-0354	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0354-01A-01G-0294-04	TCGA-08-0354-01A-01D-0304-04
TCGA-08-0380	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0380-01A-01G-0294-04	TCGA-08-0380-01A-01D-0304-04
TCGA-06-0176	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0238-04	TCGA-06-0176-01A-03D-0238-04
TCGA-06-0168	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0168-01A-01D-0238-04	TCGA-06-0168-01A-02D-0238-04
TCGA-08-0375	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0375-01A-01G-0294-04	TCGA-08-0375-01A-01D-0304-04
TCGA-06-0137	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0137-01A-01D-0215-04,TCGA-06-0137-01A-02D-0215-04,TCGA-06-0137-01A-03D-0215-04	TCGA-06-0137-01B-02D-0215-04
TCGA-06-0148	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0148-01A-01D-0215-04,TCGA-06-0148-01A-03D-0238-04,TCGA-06-0148-01A-04D-0238-04	TCGA-06-0148-01A-05D-0238-04
TCGA-08-0344	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0344-01A-01G-0294-04	TCGA-08-0344-01A-01D-0304-04
TCGA-06-0216	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-06-0216-01A-01D-0238-04	TCGA-06-0216-01B-01D-0334-04
TCGA-06-0139	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0139-01A-01D-0215-04	TCGA-06-0139-01B-05D-0215-04
TCGA-06-0138	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0138-01A-01D-0238-04	TCGA-06-0138-01A-02D-0238-04
TCGA-06-0147	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-06-0147-01A-01D-0215-04	TCGA-06-0147-01A-02D-0238-04
TCGA-06-0210	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0210-01A-01D-0238-04	TCGA-06-0210-01B-01D-0238-04
TCGA-08-0351	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-08-0351-01A-01G-0294-04	TCGA-08-0351-01A-01D-0304-04
TCGA-06-0154	cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0238-04	TCGA-06-0154-01A-03D-0238-04
TCGA-06-0129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0129-10A-01G-0289-01	TCGA-06-0129-10A-01D-0214-01
TCGA-06-0154	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-06-0154-01A-02D-0236-01	TCGA-06-0154-01A-03D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0143-10A-01G-0289-01	TCGA-06-0143-10A-01D-0214-01
TCGA-06-0147	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0147-10A-01D-0214-01	TCGA-06-0147-10A-01D-0237-01
TCGA-06-0141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0141-10A-01G-0289-01	TCGA-06-0141-10A-01D-0214-01
TCGA-06-0128	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0128-10A-01G-0289-01	TCGA-06-0128-10A-01D-0214-01
TCGA-06-0166	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0166-01A-01G-0289-01	TCGA-06-0166-01A-01D-0236-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0126-10A-01G-0289-01	TCGA-06-0126-10A-01D-0214-01
TCGA-06-0124	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0124-10A-01G-0289-01	TCGA-06-0124-10A-01D-0214-01
TCGA-06-0130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0130-01A-01G-0289-01	TCGA-06-0130-01A-01D-0214-01
TCGA-06-0125	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0125-10A-01G-0289-01	TCGA-06-0125-10A-01D-0214-01
TCGA-06-0126	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0126-01A-01G-0289-01	TCGA-06-0126-01A-01D-0214-01
TCGA-06-0211	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-06-0211-01A-01D-0236-01	TCGA-06-0211-01B-01D-0236-01
TCGA-06-0143	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0143-01A-01G-0289-01	TCGA-06-0143-01A-01D-0214-01
TCGA-06-0176	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-06-0176-01A-02D-0236-01	TCGA-06-0176-01A-03D-0236-01
TCGA-06-0216	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-06-0216-10A-01D-0237-01	TCGA-06-0216-10A-01D-0333-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01
TCGA-CV-6955	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CV-6955-01A-11D-2010-01	TCGA-CV-6955-01A-11D-2062-01
TCGA-CV-6956	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CV-6956-01A-21D-2010-01	TCGA-CV-6956-01A-21D-2062-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-B2-4098	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B2-4098-01A-01D-1185-01	TCGA-B2-4098-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-A3-3323	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01D-0858-01	TCGA-A3-3323-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3374	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01D-0858-01	TCGA-A3-3374-01A-02D-1322-01
TCGA-A3-3382	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01D-0858-01	TCGA-A3-3382-01A-02D-1322-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-B2-4098	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B2-4098-01A-01D-1185-01	TCGA-B2-4098-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-A3-3323	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01D-0858-01	TCGA-A3-3323-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3374	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01D-0858-01	TCGA-A3-3374-01A-02D-1322-01
TCGA-A3-3382	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01D-0858-01	TCGA-A3-3382-01A-02D-1322-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-AK-3444	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01T-0860-13	TCGA-AK-3444-01A-02R-1324-13
TCGA-A3-3324	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01T-0860-13	TCGA-A3-3324-01A-02R-1324-13
TCGA-A3-3320	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01T-0860-13	TCGA-A3-3320-01A-02R-1324-13
TCGA-AK-3443	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01T-0860-13	TCGA-AK-3443-01A-02R-1324-13
TCGA-A3-3374	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01T-0860-13	TCGA-A3-3374-01A-02R-1324-13
TCGA-A3-3313	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01T-0860-13	TCGA-A3-3313-01A-02R-1324-13
TCGA-A3-3382	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01T-0860-13	TCGA-A3-3382-01A-02R-1324-13
TCGA-AK-3453	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01T-0860-13	TCGA-AK-3453-01A-02R-1276-13
TCGA-A3-3378	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01T-0860-13	TCGA-A3-3378-01A-02R-1324-13
TCGA-A3-3319	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01T-0860-13	TCGA-A3-3319-01A-02R-1324-13
TCGA-A3-3331	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01T-0860-13	TCGA-A3-3331-01A-02R-1324-13
TCGA-A3-3383	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01T-0860-13	TCGA-A3-3383-01A-02R-1324-13
TCGA-A3-3308	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01T-0860-13	TCGA-A3-3308-01A-02R-1324-13
TCGA-A3-3323	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01T-0860-13	TCGA-A3-3323-01A-02R-1324-13
TCGA-A3-3372	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01T-0860-13	TCGA-A3-3372-01A-02R-1324-13
TCGA-A3-3311	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01T-0860-13	TCGA-A3-3311-01A-02R-1324-13
TCGA-A3-3322	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01T-0860-13	TCGA-A3-3322-01A-02R-1324-13
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-AK-3444	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01T-0860-13	TCGA-AK-3444-01A-02R-1324-13
TCGA-A3-3324	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01T-0860-13	TCGA-A3-3324-01A-02R-1324-13
TCGA-A3-3320	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01T-0860-13	TCGA-A3-3320-01A-02R-1324-13
TCGA-AK-3443	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01T-0860-13	TCGA-AK-3443-01A-02R-1324-13
TCGA-A3-3374	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01T-0860-13	TCGA-A3-3374-01A-02R-1324-13
TCGA-A3-3313	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01T-0860-13	TCGA-A3-3313-01A-02R-1324-13
TCGA-A3-3382	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01T-0860-13	TCGA-A3-3382-01A-02R-1324-13
TCGA-AK-3453	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01T-0860-13	TCGA-AK-3453-01A-02R-1276-13
TCGA-A3-3378	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01T-0860-13	TCGA-A3-3378-01A-02R-1324-13
TCGA-A3-3319	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01T-0860-13	TCGA-A3-3319-01A-02R-1324-13
TCGA-A3-3331	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01T-0860-13	TCGA-A3-3331-01A-02R-1324-13
TCGA-A3-3383	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01T-0860-13	TCGA-A3-3383-01A-02R-1324-13
TCGA-A3-3308	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01T-0860-13	TCGA-A3-3308-01A-02R-1324-13
TCGA-A3-3323	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01T-0860-13	TCGA-A3-3323-01A-02R-1324-13
TCGA-A3-3372	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01T-0860-13	TCGA-A3-3372-01A-02R-1324-13
TCGA-A3-3311	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01T-0860-13	TCGA-A3-3311-01A-02R-1324-13
TCGA-A3-3322	mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01T-0860-13	TCGA-A3-3322-01A-02R-1324-13
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-B2-4098	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B2-4098-01A-01D-1185-01	TCGA-B2-4098-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-A3-3323	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01D-0858-01	TCGA-A3-3323-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3374	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01D-0858-01	TCGA-A3-3374-01A-02D-1322-01
TCGA-A3-3382	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01D-0858-01	TCGA-A3-3382-01A-02D-1322-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01
TCGA-B8-4620	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B8-4620-01A-01D-1185-01,TCGA-B8-4620-01A-02D-1322-01	TCGA-B8-4620-01A-01D-1549-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-CJ-4639	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4639-01A-01D-1185-01	TCGA-CJ-4639-01A-02D-1322-01
TCGA-CJ-4636	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4636-01A-01D-1185-01	TCGA-CJ-4636-01A-02D-1322-01
TCGA-A3-3331	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3331-01A-01D-0858-01	TCGA-A3-3331-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3440-10A-01D-0858-01	TCGA-AK-3440-10A-01D-1274-01
TCGA-A3-3324	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3324-01A-01D-0858-01	TCGA-A3-3324-01A-02D-1322-01
TCGA-A3-3351	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3351-01A-01D-1185-01	TCGA-A3-3351-01A-02D-1322-01
TCGA-BP-4163	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-BP-4163-01A-01D-1185-01	TCGA-BP-4163-01A-02D-1322-01
TCGA-A3-3317	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3317-01A-01D-0858-01	TCGA-A3-3317-01A-02D-1322-01
TCGA-AK-3465	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3465-01A-01D-0858-01	TCGA-AK-3465-01A-02D-1322-01
TCGA-AK-3436	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3436-01A-01D-1185-01	TCGA-AK-3436-01A-02D-1322-01
TCGA-BP-4162	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-BP-4162-01A-01D-1185-01	TCGA-BP-4162-01A-02D-1322-01
TCGA-BP-4167	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-BP-4167-01A-01D-1185-01	TCGA-BP-4167-01A-02D-1322-01
TCGA-B2-3923	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B2-3923-01A-01D-1185-01	TCGA-B2-3923-01A-02D-1322-01
TCGA-CJ-4638	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4638-01A-01D-1185-01	TCGA-CJ-4638-01A-02D-1322-01
TCGA-A3-3347	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3347-01A-01D-1185-01	TCGA-A3-3347-01A-02D-1322-01
TCGA-AK-3440	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3440-01A-01D-0858-01	TCGA-AK-3440-01A-02D-1274-01
TCGA-CJ-4644	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4644-01A-01D-1185-01	TCGA-CJ-4644-01A-02D-1322-01
TCGA-A3-3319	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3319-01A-01D-0858-01	TCGA-A3-3319-01A-02D-1322-01
TCGA-CJ-4643	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4643-01A-01D-1185-01	TCGA-CJ-4643-01A-02D-1322-01
TCGA-B8-4619	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B8-4619-01A-01D-1185-01,TCGA-B8-4619-01A-02D-1322-01	TCGA-B8-4619-01A-02D-1549-01
TCGA-A3-3383	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3383-01A-01D-0858-01	TCGA-A3-3383-01A-02D-1322-01
TCGA-AK-3456	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3456-01A-01D-1185-01	TCGA-AK-3456-01A-02D-1322-01
TCGA-A3-3311	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3311-01A-01D-0858-01	TCGA-A3-3311-01A-02D-1322-01
TCGA-A3-3322	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3322-01A-01D-0858-01	TCGA-A3-3322-01A-02D-1322-01
TCGA-BP-4161	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-BP-4161-01A-01D-1185-01	TCGA-BP-4161-01A-02D-1322-01
TCGA-A3-3320	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3320-01A-01D-0858-01	TCGA-A3-3320-01A-02D-1322-01
TCGA-CJ-4640	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4640-01A-01D-1185-01	TCGA-CJ-4640-01A-02D-1322-01
TCGA-A3-3313	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3313-01A-01D-0858-01	TCGA-A3-3313-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3453-01A-01D-0858-01	TCGA-AK-3453-01A-02D-1274-01
TCGA-CJ-4641	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4641-01A-01D-1185-01	TCGA-CJ-4641-01A-02D-1322-01
TCGA-B2-4102	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B2-4102-01A-01D-1185-01	TCGA-B2-4102-01A-02D-1322-01
TCGA-B8-4148	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B8-4148-01A-01D-1185-01	TCGA-B8-4148-01A-02D-1322-01
TCGA-A3-3362	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3362-01A-01D-1185-01	TCGA-A3-3362-01A-02D-1322-01
TCGA-A3-3308	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3308-01A-01D-0858-01	TCGA-A3-3308-01A-02D-1322-01
TCGA-BP-4164	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-BP-4164-01A-01D-1185-01	TCGA-BP-4164-01A-02D-1322-01
TCGA-A3-3372	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3372-01A-01D-0858-01	TCGA-A3-3372-01A-02D-1322-01
TCGA-AK-3429	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3429-01A-01D-1185-01	TCGA-AK-3429-01A-02D-1322-01
TCGA-AK-3444	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3444-01A-01D-0858-01	TCGA-AK-3444-01A-02D-1322-01
TCGA-B2-4098	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B2-4098-01A-01D-1185-01	TCGA-B2-4098-01A-02D-1322-01
TCGA-CJ-4634	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4634-01A-01D-1185-01	TCGA-CJ-4634-01A-02D-1322-01
TCGA-AK-3443	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3443-01A-01D-0858-01	TCGA-AK-3443-01A-02D-1322-01
TCGA-A3-3323	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3323-01A-01D-0858-01	TCGA-A3-3323-01A-02D-1322-01
TCGA-B8-4622	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B8-4622-01A-02D-1274-01	TCGA-B8-4622-01A-02D-1549-01
TCGA-A3-3374	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3374-01A-01D-0858-01	TCGA-A3-3374-01A-02D-1322-01
TCGA-A3-3382	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3382-01A-01D-0858-01	TCGA-A3-3382-01A-02D-1322-01
TCGA-A3-3378	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-A3-3378-01A-01D-0858-01	TCGA-A3-3378-01A-02D-1322-01
TCGA-CJ-4637	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-CJ-4637-01A-01D-1185-01	TCGA-CJ-4637-01A-02D-1322-01
TCGA-AK-3453	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3453-10A-01D-0858-01	TCGA-AK-3453-10A-01D-1274-01
TCGA-AK-3426	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AK-3426-01A-01D-1185-01	TCGA-AK-3426-01A-02D-1322-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01
TCGA-B3-3926	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B3-3926-01A-01D-1190-01	TCGA-B3-3926-01A-02D-1348-01
TCGA-B9-4117	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B9-4117-01A-01D-1190-01	TCGA-B9-4117-01A-02D-1348-01
TCGA-AL-3468	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AL-3468-01A-01D-1190-01	TCGA-AL-3468-01A-02D-1348-01
TCGA-AL-3466	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AL-3466-01A-01D-1190-01	TCGA-AL-3466-01A-02D-1348-01
TCGA-B9-4116	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B9-4116-01A-01D-1190-01	TCGA-B9-4116-01A-02D-1348-01
TCGA-B3-3925	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B3-3925-01A-01D-1190-01	TCGA-B3-3925-01A-02D-1348-01
TCGA-AL-3471	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AL-3471-01A-01D-1190-01	TCGA-AL-3471-01A-02D-1348-01
TCGA-B3-4104	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B3-4104-01A-01D-1190-01	TCGA-B3-4104-01A-02D-1348-01
TCGA-B3-4103	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B3-4103-01A-01D-1190-01	TCGA-B3-4103-01A-02D-1348-01
TCGA-AL-3467	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AL-3467-01A-01D-1190-01	TCGA-AL-3467-01A-02D-1348-01
TCGA-B9-4115	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-B9-4115-01A-01D-1190-01	TCGA-B9-4115-01A-01D-1549-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-44-2666	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-2666-01A-01D-A276-05	TCGA-44-2666-01B-02D-A276-05
TCGA-44-2668	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-2668-01A-01D-A276-05	TCGA-44-2668-01B-02D-A276-05
TCGA-44-4112	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-4112-01A-01D-A276-05	TCGA-44-4112-01B-06D-A276-05
TCGA-44-3918	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-3918-01A-01D-A276-05	TCGA-44-3918-01B-02D-A276-05
TCGA-44-5645	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-5645-01A-01D-1626-05,TCGA-44-5645-01A-01D-A276-05	TCGA-44-5645-01B-04D-A276-05
TCGA-44-3917	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-3917-01A-01D-A276-05	TCGA-44-3917-01B-02D-A276-05
TCGA-44-6775	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-6775-01A-11D-A276-05,TCGA-44-6775-01A-11D-1856-05	TCGA-44-6775-01C-02D-A276-05
TCGA-44-6147	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-6147-01A-11D-A276-05,TCGA-44-6147-01A-11D-1756-05	TCGA-44-6147-01B-06D-A276-05
TCGA-44-2656	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-2656-01A-02D-A276-05	TCGA-44-2656-01B-06D-A276-05
TCGA-44-2665	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-2665-01A-01D-A276-05	TCGA-44-2665-01B-06D-A276-05
TCGA-44-6146	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-44-6146-01A-11D-1756-05,TCGA-44-6146-01A-11D-A276-05	TCGA-44-6146-01B-04D-A276-05
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2657-11A-01D-1549-01	TCGA-44-2657-11A-01D-1877-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-3919	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-44-3919-10A-01D-1450-01	TCGA-44-3919-10A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-2668	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2668-01A-01D-0944-01	TCGA-44-2668-01A-01D-1549-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2661-11A-01D-1549-01	TCGA-44-2661-11A-01D-1877-01
TCGA-44-2659	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2659-01A-01D-0944-01	TCGA-44-2659-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2657-11A-01D-1549-01	TCGA-44-2657-11A-01D-1877-01
TCGA-38-4625	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-38-4625-01A-01D-1204-01	TCGA-38-4625-01A-01D-1549-01
TCGA-38-4627	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-38-4627-01A-01D-1204-01	TCGA-38-4627-01A-01D-1549-01
TCGA-44-2657	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2657-01A-01D-1549-01	TCGA-44-2657-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-3398-01A-01D-1549-01	TCGA-44-3398-01A-01D-1877-01
TCGA-44-2661	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-2661-01A-01D-1549-01	TCGA-44-2661-01A-01D-1877-01
TCGA-44-3398	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-3398-11B-01D-1549-01	TCGA-44-3398-11B-01D-1877-01
TCGA-44-3919	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-3919-10A-01D-1450-01	TCGA-44-3919-10A-01D-1877-01
TCGA-44-4112	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-44-4112-10A-01D-1450-01	TCGA-44-4112-10A-01D-1877-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-66-2759	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-66-2759-01A-01D-0844-01	TCGA-66-2759-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-66-2758	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-66-2758-01A-02D-0844-01	TCGA-66-2758-01A-02D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-60-2720	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-60-2720-01A-01D-0844-01	TCGA-60-2720-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-60-2710	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-60-2710-01A-01D-0844-01	TCGA-60-2710-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-66-2744	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-66-2744-01A-01D-0978-01	TCGA-66-2744-01A-01D-1969-01
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-21-1076	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0690-01	TCGA-21-1076-01A-02R-0690-01
TCGA-21-1076	cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0688-02	TCGA-21-1076-01A-02D-0688-02
TCGA-21-1076	rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-21-1076	cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_1__image_acquisition__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0688-02	TCGA-21-1076-01A-02D-0688-02
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-21-1076	methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0689-05	TCGA-21-1076-01A-02D-0689-05
TCGA-21-1076	rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-21-1076	cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0686-04	TCGA-21-1076-01A-02D-0686-04
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-66-2759	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-66-2759-01A-01D-0844-01	TCGA-66-2759-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-66-2758	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-66-2758-01A-02D-0844-01	TCGA-66-2758-01A-02D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-60-2720	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-60-2720-01A-01D-0844-01	TCGA-60-2720-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-60-2710	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-60-2710-01A-01D-0844-01	TCGA-60-2710-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-66-2744	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-66-2744-01A-01D-0978-01	TCGA-66-2744-01A-01D-1969-01
TCGA-21-1076	cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0686-04	TCGA-21-1076-01A-02D-0686-04
TCGA-21-1076	rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-21-1076	rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-21-1076	cna__cgh_1x1m_g4447a__mskcc_org__Level_1__feature_extraction__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0686-04	TCGA-21-1076-01A-02D-0686-04
TCGA-21-1076	rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-21-1076	exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0691-03	TCGA-21-1076-01A-02R-0691-03
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-66-2759	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-66-2759-01A-01D-0844-01	TCGA-66-2759-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-66-2758	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-66-2758-01A-02D-0844-01	TCGA-66-2758-01A-02D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-60-2720	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-60-2720-01A-01D-0844-01	TCGA-60-2720-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-60-2710	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-60-2710-01A-01D-0844-01	TCGA-60-2710-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-66-2744	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-66-2744-01A-01D-0978-01	TCGA-66-2744-01A-01D-1969-01
TCGA-21-1076	cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0688-02	TCGA-21-1076-01A-02D-0688-02
TCGA-21-1076	rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-21-1076	transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-4135	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-4135-01A-01D-1097-01	TCGA-37-4135-01A-01D-1969-01
TCGA-37-4130	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-4130-01A-01D-1097-01	TCGA-37-4130-01A-01D-1969-01
TCGA-37-4132	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-4132-01A-01D-1097-01	TCGA-37-4132-01A-01D-1969-01
TCGA-18-3407	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-18-3407-01A-01D-0978-01	TCGA-18-3407-01A-01D-1969-01
TCGA-66-2759	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-66-2759-01A-01D-0844-01	TCGA-66-2759-01A-01D-1969-01
TCGA-37-4141	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-4141-01A-02D-1097-01	TCGA-37-4141-01A-02D-1969-01
TCGA-22-4601	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-22-4601-01A-01D-1439-01	TCGA-22-4601-01A-01D-1969-01
TCGA-37-4129	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-4129-01A-01D-1097-01	TCGA-37-4129-01A-01D-1969-01
TCGA-66-2758	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-66-2758-01A-02D-0844-01	TCGA-66-2758-01A-02D-1969-01
TCGA-18-3410	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-18-3410-01A-01D-0978-01	TCGA-18-3410-01A-01D-1969-01
TCGA-60-2720	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-60-2720-01A-01D-0844-01	TCGA-60-2720-01A-01D-1969-01
TCGA-66-2791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-66-2791-01A-01D-0978-01	TCGA-66-2791-01A-01D-1969-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-51-4080	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-51-4080-01A-01D-1097-01	TCGA-51-4080-01A-01D-1969-01
TCGA-43-2578	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-43-2578-01A-01D-0844-01	TCGA-43-2578-01A-01D-1969-01
TCGA-60-2710	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-60-2710-01A-01D-0844-01	TCGA-60-2710-01A-01D-1969-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-18-3411	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-18-3411-01A-01D-0978-01	TCGA-18-3411-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-37-3792	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-37-3792-01A-01D-0978-01	TCGA-37-3792-01A-01D-1969-01
TCGA-66-2744	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-66-2744-01A-01D-0978-01	TCGA-66-2744-01A-01D-1969-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-21-1076	rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-21-1076	methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0689-05	TCGA-21-1076-01A-02D-0689-05
TCGA-21-1076	transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-21-1076	transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0690-01	TCGA-21-1076-01A-02R-0690-01
TCGA-43-3394	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-43-3394-01A-01D-0978-01	TCGA-43-3394-01A-01D-1549-01
TCGA-43-3920	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-43-3920-01A-01D-0978-01	TCGA-43-3920-01A-01D-1549-01
TCGA-21-1076	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0685-01	TCGA-21-1076-01A-02D-0685-01
TCGA-21-1076	exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0691-03	TCGA-21-1076-01A-02R-0691-03
TCGA-21-1076	exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0691-03	TCGA-21-1076-01A-02R-0691-03
TCGA-21-1076	snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	Sort Replicate Filter	TCGA-21-1076-01A-01D-0687-06	TCGA-21-1076-01A-02D-0687-06
TCGA-21-1076	rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	Sort Replicate Filter	TCGA-21-1076-01A-01R-0692-07	TCGA-21-1076-01A-02R-0692-07

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-23-1023	exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0435-03	TCGA-23-1023-01R-01R-0809-03
TCGA-23-1023	transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0436-07	TCGA-23-1023-01R-01R-0810-07
TCGA-23-1023	methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0432-05	TCGA-23-1023-01R-01D-0807-05
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-1692-02A-01D-0803-01	TCGA-29-1692-02A-01D-2069-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-29-1770	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-1770-02A-01D-0803-01	TCGA-29-1770-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-1819-02A-01D-0803-01	TCGA-13-1819-02A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-1817-02A-01D-0803-01	TCGA-13-1817-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-1817-01A-01D-0803-01	TCGA-13-1817-01A-01D-2069-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-61-2008	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-61-2008-02A-01D-0803-01	TCGA-61-2008-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-1489	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-1489-02A-01D-0803-01	TCGA-13-1489-02A-01D-2069-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0436-07	TCGA-23-1023-01R-01R-0810-07
TCGA-23-1023	cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0429-04	TCGA-23-1023-01R-01D-0804-04
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0435-03	TCGA-23-1023-01R-01R-0809-03
TCGA-23-1023	transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0434-01	TCGA-23-1023-01R-01R-0808-01
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0435-03	TCGA-23-1023-01R-01R-0809-03
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-1692-02A-01D-0803-01	TCGA-29-1692-02A-01D-2069-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-29-1770	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-1770-02A-01D-0803-01	TCGA-29-1770-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-1819-02A-01D-0803-01	TCGA-13-1819-02A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-1817-02A-01D-0803-01	TCGA-13-1817-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-1817-01A-01D-0803-01	TCGA-13-1817-01A-01D-2069-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-61-2008	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-61-2008-02A-01D-0803-01	TCGA-61-2008-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-1489	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-1489-02A-01D-0803-01	TCGA-13-1489-02A-01D-2069-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	Sort Replicate Filter	TCGA-23-1023-01A-02R-1564-13	TCGA-23-1023-01R-01R-1564-13
TCGA-23-1023	cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0429-04	TCGA-23-1023-01R-01D-0804-04
TCGA-23-1023	methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0432-05	TCGA-23-1023-01R-01D-0807-05
TCGA-23-1023	rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	Sort Replicate Filter	TCGA-23-1023-01A-02R-1564-13	TCGA-23-1023-01R-01R-1564-13
TCGA-23-1023	rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_2__snv__data	Sort Replicate Filter	TCGA-23-1023-01A-02R-1564-13	TCGA-23-1023-01R-01R-1564-13
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-23-1023	transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	Analyte Replicate Filter	TCGA-23-1023-01A-02R-0434-01	TCGA-23-1023-01R-01R-0808-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-1692-02A-01D-0803-01	TCGA-29-1692-02A-01D-2069-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-29-1770	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-1770-02A-01D-0803-01	TCGA-29-1770-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-1819-02A-01D-0803-01	TCGA-13-1819-02A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-1817-02A-01D-0803-01	TCGA-13-1817-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-1817-01A-01D-0803-01	TCGA-13-1817-01A-01D-2069-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-61-2008	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-61-2008-02A-01D-0803-01	TCGA-61-2008-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-1489	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-1489-02A-01D-0803-01	TCGA-13-1489-02A-01D-2069-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-1692-02A-01D-0803-01	TCGA-29-1692-02A-01D-2069-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-29-1770	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-1770-02A-01D-0803-01	TCGA-29-1770-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-1819-02A-01D-0803-01	TCGA-13-1819-02A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-1817-02A-01D-0803-01	TCGA-13-1817-02A-01D-2069-01
TCGA-13-1817	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-1817-01A-01D-0803-01	TCGA-13-1817-01A-01D-2069-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-61-2008	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-61-2008-02A-01D-0803-01	TCGA-61-2008-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-1489	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-1489-02A-01D-0803-01	TCGA-13-1489-02A-01D-2069-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0428-01	TCGA-23-1023-01R-01D-0803-01
TCGA-23-1023	cna__cgh_1x1m_g4447a__mskcc_org__Level_1__feature_extraction__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0429-04	TCGA-23-1023-01R-01D-0804-04
TCGA-23-1023	rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_2__indel__data	Sort Replicate Filter	TCGA-23-1023-01A-02R-1564-13	TCGA-23-1023-01R-01R-1564-13
TCGA-23-1023	mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	Analyte Replicate Filter	TCGA-23-1023-01A-02T-0438-07	TCGA-23-1023-01R-01T-0811-07
TCGA-23-1023	rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	Sort Replicate Filter	TCGA-23-1023-01A-02R-1564-13	TCGA-23-1023-01R-01R-1564-13
TCGA-72-4240	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4240-01A-01D-1014-08	TCGA-72-4240-01A-01D-1017-01
TCGA-29-1705	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-29-1705-02A-01D-0803-01	TCGA-29-1705-02A-01D-2069-01
TCGA-13-1819	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-13-1819-01A-01D-0803-01	TCGA-13-1819-01A-01D-2069-01
TCGA-72-4238	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4238-01A-01D-1014-08	TCGA-72-4238-01A-01D-1017-01
TCGA-72-4234	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4234-01A-01D-1014-08	TCGA-72-4234-01A-01D-1017-01
TCGA-29-1704	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-29-1704-02A-01D-0803-01	TCGA-29-1704-02A-01D-2069-01
TCGA-72-4231	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4231-01A-01D-1014-08	TCGA-72-4231-01A-01D-1017-01
TCGA-72-4236	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4236-01A-01D-1014-08	TCGA-72-4236-01A-01D-1017-01
TCGA-29-2414	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-29-2414-01A-02D-0704-01	TCGA-29-2414-01A-02D-2069-01
TCGA-72-4241	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4241-01A-01D-1014-08	TCGA-72-4241-01A-01D-1017-01
TCGA-13-0791	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-13-0791-02A-01D-0803-01	TCGA-13-0791-02A-01D-2069-01
TCGA-72-4235	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4235-01A-01D-1014-08	TCGA-72-4235-01A-01D-1017-01
TCGA-72-4233	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4233-01A-01D-1014-08	TCGA-72-4233-01A-01D-1017-01
TCGA-29-1692	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-29-1692-01B-01D-0803-01	TCGA-29-1692-01B-01D-2069-01
TCGA-72-4237	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4237-01A-01D-1014-08	TCGA-72-4237-01A-01D-1017-01
TCGA-72-4232	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-72-4232-01A-01D-1014-08	TCGA-72-4232-01A-01D-1017-01
TCGA-23-1023	mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	Analyte Replicate Filter	TCGA-23-1023-01A-02T-0438-07	TCGA-23-1023-01R-01T-0811-07
TCGA-23-1023	snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	Analyte Replicate Filter	TCGA-23-1023-01A-03D-0430-06	TCGA-23-1023-01R-01D-0805-06

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-HC-8265	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11D-2259-01	TCGA-HC-8265-01B-04D-2297-01
TCGA-HC-8258	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11D-2259-01	TCGA-HC-8258-01B-05D-2297-01
TCGA-HC-7740	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11D-2112-01	TCGA-HC-7740-01B-04D-2297-01
TCGA-HC-8261	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11D-2259-01	TCGA-HC-8261-01B-05D-2297-01
TCGA-HC-8265	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11D-2259-01	TCGA-HC-8265-01B-04D-2297-01
TCGA-HC-8258	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11D-2259-01	TCGA-HC-8258-01B-05D-2297-01
TCGA-HC-7740	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11D-2112-01	TCGA-HC-7740-01B-04D-2297-01
TCGA-HC-8261	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11D-2259-01	TCGA-HC-8261-01B-05D-2297-01
TCGA-HC-8265	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11D-2259-01	TCGA-HC-8265-01B-04D-2297-01
TCGA-HC-8258	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11D-2259-01	TCGA-HC-8258-01B-05D-2297-01
TCGA-HC-7740	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11D-2112-01	TCGA-HC-7740-01B-04D-2297-01
TCGA-HC-8261	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11D-2259-01	TCGA-HC-8261-01B-05D-2297-01
TCGA-HC-8265	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-HC-8265-01A-11D-2259-01	TCGA-HC-8265-01B-04D-2297-01
TCGA-HC-8258	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-HC-8258-01A-11D-2259-01	TCGA-HC-8258-01B-05D-2297-01
TCGA-HC-7740	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-HC-7740-01A-11D-2112-01	TCGA-HC-7740-01B-04D-2297-01
TCGA-HC-8261	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-HC-8261-01A-11D-2259-01	TCGA-HC-8261-01B-05D-2297-01
TCGA-HC-8265	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11R-2262-13	TCGA-HC-8265-01B-04R-2303-13
TCGA-HC-7740	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11R-2117-13	TCGA-HC-7740-01B-04R-2303-13
TCGA-HC-8261	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11R-2262-13	TCGA-HC-8261-01B-05R-2303-13
TCGA-HC-8258	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11R-2262-13	TCGA-HC-8258-01B-05R-2303-13
TCGA-HC-8265	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11R-2262-13	TCGA-HC-8265-01B-04R-2303-13
TCGA-HC-7740	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11R-2117-13	TCGA-HC-7740-01B-04R-2303-13
TCGA-HC-8261	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11R-2262-13	TCGA-HC-8261-01B-05R-2303-13
TCGA-HC-8258	mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11R-2262-13	TCGA-HC-8258-01B-05R-2303-13
TCGA-HC-8265	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-HC-8265-01A-11D-2261-05	TCGA-HC-8265-01B-04D-2299-05
TCGA-HC-8258	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-HC-8258-01A-11D-2261-05	TCGA-HC-8258-01B-05D-2299-05
TCGA-HC-7740	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-HC-7740-01A-11D-2116-05	TCGA-HC-7740-01B-04D-2299-05
TCGA-HC-8261	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Analyte Replicate Filter	TCGA-HC-8261-01A-11D-2261-05	TCGA-HC-8261-01B-05D-2299-05

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AG-A026-10A-01D-A008-01	TCGA-AG-A026-10A-01D-A080-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_1__image_acquisition__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__byallele_copynumber__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AG-A026-10A-01D-A008-01	TCGA-AG-A026-10A-01D-A080-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__tangent_copynumber__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__raw_copynumber__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AF-3400	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AF-3400-01A-01D-0819-01	TCGA-AF-3400-01A-01D-1549-01
TCGA-AF-2689	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AF-2689-01A-01D-0819-01	TCGA-AF-2689-01A-01D-1549-01
TCGA-AF-2691	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AF-2691-01A-01D-0819-01	TCGA-AF-2691-01A-01D-1549-01
TCGA-AG-A026	snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	Analyte Replicate Filter	TCGA-AG-A026-01A-01D-A008-01	TCGA-AG-A026-01A-32D-A080-01

Participant Id	DataType__Platform__Center__DataLevel__ProtocolName_Extension	Filter Reason	Removed Sample(s)	Chosen Sample
TCGA-BK-A0CC	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BK-A0CC-01A-21D-A27B-05	TCGA-BK-A0CC-01B-04D-A27B-05
TCGA-BK-A26L	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BK-A26L-01A-11D-A16G-05,TCGA-BK-A26L-01A-11D-A27B-05	TCGA-BK-A26L-01C-04D-A27B-05
TCGA-BK-A139	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BK-A139-01A-11D-A123-05,TCGA-BK-A139-01A-11D-A27B-05	TCGA-BK-A139-01C-08D-A27B-05
TCGA-BK-A0CA	methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	Sort Replicate Filter	TCGA-BK-A0CA-01A-21D-A27B-05,TCGA-BK-A0CA-01A-21D-A123-05	TCGA-BK-A0CA-01B-02D-A27B-05

+ Blacklisted Samples

In certain circumstances, replicate filtering may choose the less favorable among two or more aliquots. For instance, an analyst may manually review two aliquots for a given individual and determine that one is superior. If the replicate filtering would choose the inferior sample, then the inferior sample can be added to this blacklist. This would result in the desired sample being chosen. This table lists those blacklisted samples and a reason for their being blacklisted.

Table 4. Get Full Table These samples were blacklisted and removed from the run.

TCGA.ID	Tumor.Type	Blacklist.Reason
TCGA-38-4626-01A-01D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-44-2655-01A-01D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-44-2656-01A-02D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-44-2662-01A-01D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-44-2665-01A-01D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-44-3396-01A-01D-1549-01	LUAD	Andrew Cherniack determined the earlier sample is better than this later one.
TCGA-AR-A0U1-01A-11R-A115-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-A7-A0DC-01A-11R-A00Z-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-BH-A0B2-11A-11R-A10J-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-BH-A0B2-01A-11R-A10J-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-A7-A0DC-11A-41R-A089-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-E2-A1IP-01A-11R-A14D-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-AA-3695-01A-01R-0905-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-A6-2670-01A-02R-0821-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-14-0871-01A-01R-1849-01	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-33-4579-01A-01R-1443-07	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-31-1950-01A-01R-1568-13	BRCA	Katherine Hoadley identified this sample as having a low read count or no confirmed SNP comparison.
TCGA-BJ-A0ZF	THCA	Per Lisa Iype, pathology reports indicated that this sample was a follicular carcinoma and not a papillary thyroid carcinoma.
TCGA-EM-A2CM	THCA	Per Lisa Iype, pathology reports indicated that this sample was a poorly differentiated oncocytic carcinoma and not a papillary thyroid carcinoma

+ Methods & Data

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