Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2013_07_15 stddata Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

ACC	92	0	0	0	0	0	0	0	0	0	0
BLCA	201	151	152	111	185	0	149	0	185	127	28
BRCA	1002	934	942	0	928	526	914	0	980	408	772
CESC	163	59	126	0	163	0	116	0	134	0	39
COAD	439	425	413	69	420	153	387	0	407	331	155
COADREAD	608	593	575	104	582	222	537	0	550	461	224
DLBC	28	0	18	0	18	0	0	0	17	0	0
ESCA	63	7	50	15	63	0	0	0	12	0	0
GBM	598	576	563	0	405	542	160	491	0	214	291
HNSC	427	348	368	108	373	0	303	0	372	212	306
KICH	66	64	66	0	66	0	66	0	66	0	65
KIRC	513	503	504	0	511	72	480	0	492	454	417
KIRP	190	118	127	0	142	16	106	0	142	0	111
LAML	200	200	197	0	194	0	179	0	188	0	197
LGG	296	221	220	0	266	27	220	0	295	0	217
LIHC	152	99	108	0	125	0	84	0	136	0	0
LUAD	563	449	493	120	555	32	446	0	488	237	229
LUSC	494	388	416	0	493	154	375	0	468	195	178
OV	592	580	576	0	584	574	296	570	453	412	316
PAAD	66	44	50	0	65	0	40	0	52	0	0
PANCAN12	5723	5196	5279	549	5322	2176	4240	1061	4679	2920	3206
PRAD	250	161	187	15	198	0	176	0	194	0	83
READ	169	168	162	35	162	69	150	0	143	130	69
SARC	111	39	52	0	73	0	32	0	82	0	0
SKCM	357	243	316	119	336	0	282	0	283	205	264
STAD	308	282	307	77	308	0	274	0	308	0	221
THCA	496	475	494	95	496	0	482	0	495	222	402
UCEC	525	474	493	106	512	54	441	0	503	200	248
UCS	57	2	0	0	57	0	0	0	0	0	0
Totals	8418	7010	7400	870	7698	2219	6158	1061	6895	3347	4608