Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2013_08_09 stddata Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

ACC	92	0	0	0	80	0	0	0	0	0	0
BLCA	213	156	184	111	185	0	163	0	185	127	28
BRCA	1014	949	992	0	985	526	914	0	980	408	772
CESC	163	71	155	0	163	0	116	0	134	0	39
COAD	439	425	427	69	435	153	387	0	407	331	155
COADREAD	608	593	589	104	597	222	537	0	550	461	224
DLBC	38	15	18	0	18	0	0	0	17	0	0
ESCA	73	11	63	15	63	0	0	0	12	0	0
GBM	599	576	563	0	405	542	160	491	0	214	291
HNSC	458	349	388	108	373	0	303	0	372	212	306
KICH	66	64	66	0	66	0	66	0	66	0	65
KIRC	513	503	504	0	511	72	480	0	492	454	417
KIRP	204	121	158	0	158	16	106	0	142	0	112
LAML	200	200	197	0	194	0	179	0	188	0	197
LGG	307	222	269	0	266	27	269	0	295	0	220
LIHC	152	116	136	0	125	0	103	0	136	0	0
LUAD	563	456	493	120	555	32	446	0	491	237	229
LUSC	494	389	489	0	493	154	408	0	468	195	178
OV	592	580	576	0	584	574	296	570	453	412	316
PAAD	66	52	66	0	65	0	40	0	52	0	57
PANCAN12	5789	5228	5480	549	5394	2176	4319	1061	4682	2920	3206
PRAD	263	165	195	15	213	0	176	0	194	0	83
READ	169	168	162	35	162	69	150	0	143	130	69
SARC	111	66	82	0	83	0	47	0	82	0	0
SKCM	357	260	336	119	336	0	310	0	283	205	264
STAD	315	289	299	71	300	0	267	0	300	0	221
THCA	496	477	494	95	496	0	482	0	495	222	402
UCEC	535	477	505	106	512	54	473	0	503	200	248
UCS	57	2	52	0	57	0	0	0	0	0	0
Totals	8549	7159	7869	864	7883	2219	6341	1061	6890	3347	4669