Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-BH-A0GY-01A-11D-A060-02	f5c72179-9bda-4bc6-b006-93eb616804bc	TCGA-BH-A0GY-01A-11D-A060-02_AC29RAACXX---TCGA-BH-A0GY-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JL-10A-01D-A060-02	5159552d-2bc4-4c78-a5fd-3b34084c6a4e	TCGA-AO-A0JL-01A-11D-A060-02_BC29HAACXX---TCGA-AO-A0JL-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HB-01A-11D-A060-02	49556237-d73f-4de9-b5d9-7169db7a53c5	TCGA-BH-A0HB-01A-11D-A060-02_BC29HAACXX---TCGA-BH-A0HB-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RI-01A-11D-A060-02	71542129-1393-4608-b81c-1767a5051763	TCGA-B6-A0RI-01A-11D-A060-02_BC291KACXX---TCGA-B6-A0RI-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0H6-10A-01D-A060-02	3ddccfec-a269-41ab-b274-31e992f98878	TCGA-BH-A0H6-01A-21D-A060-02_AD2B3HACXX---TCGA-BH-A0H6-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0DK-01A-21D-A060-02	92245807-8b1b-4e96-8567-6cfe5e70ade4	TCGA-BH-A0DK-01A-21D-A060-02_BC291KACXX---TCGA-BH-A0DK-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RI-10A-01D-A060-02	c9478f7d-bfe3-4e80-8161-39b3d440fa16	TCGA-B6-A0RI-01A-11D-A060-02_BC291KACXX---TCGA-B6-A0RI-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HX-10A-02D-A060-02	39c48c76-b9ac-4485-a7c3-4729a56f830c	TCGA-BH-A0HX-01A-21D-A060-02_BC291KACXX---TCGA-BH-A0HX-10A-02D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HX-01A-21D-A060-02	11821020-0e93-4479-85f8-306976de6722	TCGA-BH-A0HX-01A-21D-A060-02_BC291KACXX---TCGA-BH-A0HX-10A-02D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HK-01A-11D-A060-02	b96ae5ec-0139-4b8d-8136-b5bfa7af8987	TCGA-BH-A0HK-01A-11D-A060-02_BC291KACXX---TCGA-BH-A0HK-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0X4-01A-11D-A106-02	062a41cc-4b23-49e2-aff8-3cfe34de9a36	TCGA-B6-A0X4-01A-11D-A106-02_AC2CVRACXX---TCGA-B6-A0X4-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0H7-01A-13D-A060-02	e0e60b71-1efa-4896-b89f-d05974cdcf48	TCGA-BH-A0H7-01A-13D-A060-02_AD2B3HACXX---TCGA-BH-A0H7-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-A2-A0EU-01A-22D-A060-02	7f0fa628-7a18-4e52-81cc-3e213c431d3e	TCGA-A2-A0EU-01A-22D-A060-02_AC29RAACXX---TCGA-A2-A0EU-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RG-01A-11D-A060-02	e71ed8ed-7371-4423-83c8-6075a6fc7c39	TCGA-B6-A0RG-01A-11D-A060-02_AC29RAACXX---TCGA-B6-A0RG-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0W5-10A-01D-A106-02	154c09b7-c645-497a-9b14-655db46cd990	TCGA-BH-A0W5-01A-11D-A106-02_AC2CVRACXX---TCGA-BH-A0W5-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-A7-A0D9-10A-01D-A060-02	34d29129-a82c-477f-8d08-dc972d08ac45	TCGA-A7-A0D9-01A-31D-A060-02_AC29RAACXX---TCGA-A7-A0D9-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0H7-10A-01D-A060-02	aa3e5150-7eff-4837-9946-efecbee42e92	TCGA-BH-A0H7-01A-13D-A060-02_AD2B3HACXX---TCGA-BH-A0H7-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-A7-A0D9-01A-31D-A060-02	7cd9ac40-f6b5-4c68-9d9a-d57845b812db	TCGA-A7-A0D9-01A-31D-A060-02_AC29RAACXX---TCGA-A7-A0D9-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JF-10A-01D-A060-02	85f3a9d5-e0b8-47b2-b525-5c8177f22c46	TCGA-AO-A0JF-01A-11D-A060-02_AC2CVRACXX---TCGA-AO-A0JF-10A-01D-A060-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0DK-10A-01D-A060-02	1cc19e5f-922b-4878-a0e9-546a8c3fc949	TCGA-BH-A0DK-01A-21D-A060-02_BC291KACXX---TCGA-BH-A0DK-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JJ-10A-01D-A060-02	8a9f1058-6930-4942-879d-6633db1848e0	TCGA-AO-A0JJ-01A-11D-A060-02_AD2B3HACXX---TCGA-AO-A0JJ-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0BM-10A-01D-A060-02	d770733c-ee28-4d36-845f-fd51c1f72666	TCGA-BH-A0BM-01A-11D-A060-02_BC29HAACXX---TCGA-BH-A0BM-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HK-10A-01D-A060-02	aacc0421-e331-49e8-ba8f-aa7b091336c5	TCGA-BH-A0HK-01A-11D-A060-02_BC291KACXX---TCGA-BH-A0HK-10A-01D-A060-02_BC291KACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-A2-A0EU-10A-01D-A060-02	11e97514-242b-4ce1-99ea-3830e6902ee3	TCGA-A2-A0EU-01A-22D-A060-02_AC29RAACXX---TCGA-A2-A0EU-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RE-10A-01D-A060-02	f2dee42d-9e1d-471d-bf3e-f1a0a27e16df	TCGA-B6-A0RE-01A-11D-A060-02_BC29HAACXX---TCGA-B6-A0RE-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JF-01A-11D-A060-02	bdaa1600-1b4f-4bba-b4d6-a4d169b029d6	TCGA-AO-A0JF-01A-11D-A060-02_AC2CVRACXX---TCGA-AO-A0JF-10A-01D-A060-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0W5-01A-11D-A106-02	6c8b3a70-cd58-4bfc-9418-54182588cfcb	TCGA-BH-A0W5-01A-11D-A106-02_AC2CVRACXX---TCGA-BH-A0W5-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0H6-01A-21D-A060-02	57d73bc9-950e-42a3-b9fb-6045117112b7	TCGA-BH-A0H6-01A-21D-A060-02_AD2B3HACXX---TCGA-BH-A0H6-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AR-A0TU-10A-01D-A106-02	c5244957-8900-4eac-b127-01e2ea5663c5	TCGA-AR-A0TU-01A-31D-A106-02_AC2CVRACXX---TCGA-AR-A0TU-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0BM-01A-11D-A060-02	fa99dd38-37f1-4b24-960e-617f92cdadd0	TCGA-BH-A0BM-01A-11D-A060-02_BC29HAACXX---TCGA-BH-A0BM-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AR-A0TU-01A-31D-A106-02	e00819a1-4a65-4289-9dde-0800fc6c69f6	TCGA-AR-A0TU-01A-31D-A106-02_AC2CVRACXX---TCGA-AR-A0TU-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RG-10A-01D-A060-02	6f602aef-51fe-40ad-9984-0f95d27a4078	TCGA-B6-A0RG-01A-11D-A060-02_AC29RAACXX---TCGA-B6-A0RG-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0X4-10A-01D-A106-02	ab0347c3-ae35-4484-88a5-e545b27f5691	TCGA-B6-A0X4-01A-11D-A106-02_AC2CVRACXX---TCGA-B6-A0X4-10A-01D-A106-02_AC2CVRACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-B6-A0RE-01A-11D-A060-02	d5ce279a-3a7f-43e7-894c-265e9504c3fd	TCGA-B6-A0RE-01A-11D-A060-02_BC29HAACXX---TCGA-B6-A0RE-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JL-01A-11D-A060-02	a34c3f47-ad37-4777-a733-07ae8f4b4bff	TCGA-AO-A0JL-01A-11D-A060-02_BC29HAACXX---TCGA-AO-A0JL-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-AO-A0JJ-01A-11D-A060-02	ed24b69d-599e-42ed-bbe3-5c4f59fabed4	TCGA-AO-A0JJ-01A-11D-A060-02_AD2B3HACXX---TCGA-AO-A0JJ-10A-01D-A060-02_AD2B3HACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0GY-10A-01D-A060-02	a9c89a38-c132-4ba7-a2d4-26b3184aa047	TCGA-BH-A0GY-01A-11D-A060-02_AC29RAACXX---TCGA-BH-A0GY-10A-01D-A060-02_AC29RAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
TCGA-BH-A0HB-10A-01D-A060-02	3f02ceb5-9b6c-453c-8a81-00d2b609b742	TCGA-BH-A0HB-01A-11D-A060-02_BC29HAACXX---TCGA-BH-A0HB-10A-01D-A060-02_BC29HAACXX---Segment.tsv	hms.harvard.edu_BRCA.IlluminaHiSeq_DNASeqC.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg_2014011500	BRCA.cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_BRCA.Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg.Level_3.2014011500.0.0	yes
