Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PRAMEF1	65121	broad.mit.edu	37	1	12854334	12854334	+	Silent	SNP	C	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:12854334C>G	uc001auj.1	+	3	661	c.558C>G	c.(556-558)GTC>GTG	p.V186V		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	186											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTAAGCTGGTCAATTATCTAA	0.423000													10	635					0	0	0	0
TFAP2E	339488	broad.mit.edu	37	1	36054125	36054125	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:36054125G>A	uc010ohy.1	+	4	965	c.757G>A	c.(757-759)GCC>ACC	p.A253T	PSMB2_uc001bzd.1_Intron	NM_178548	NP_848643	Q6VUC0	AP2E_HUMAN	transcription factor AP-2 epsilon (activating	253						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				GTGCCTCAACGCCTCCCTCCT	0.647000													24	65					0	0	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76878016	76878016	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:76878016C>G	uc001dhh.2	+	3	700	c.537C>G	c.(535-537)ATC>ATG	p.I179M	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.I179M|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.I114M	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	179	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						CAGTTGGTATCTATCCGAATG	0.423000													8	61					0	0	0	0
PIGK	10026	broad.mit.edu	37	1	77558068	77558068	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:77558068G>A	uc001dhk.2	-	11	1224	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	PIGK_uc010orj.1_Silent_p.F317F|PIGK_uc009wbx.2_Silent_p.F299F	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	393	Cytoplasmic (Potential).			Missing: Loss of activity.	attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						TCTAAAAAATGAACTTCATAT	0.328000													9	51					0	0	0	0
SPAG17	200162	broad.mit.edu	37	1	118640375	118640375	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:118640375G>T	uc001ehk.2	-	7	997	c.929C>A	c.(928-930)ACA>AAA	p.T310K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	310						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AAAGAGATTTGTTTCAGGTTT	0.378000													326	47					2.44235e-143	1.5296e-142	1	0
NOTCH2	4853	broad.mit.edu	37	1	120458562	120458562	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:120458562C>G	uc001eik.2	-	34	7039	c.6783G>C	c.(6781-6783)GAG>GAC	p.E2261D		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2261	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTACTGGGTCTCATTCACCT	0.557000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				71	250					0	0	0	0
S100A10	6281	broad.mit.edu	37	1	151955750	151955750	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:151955750C>A	uc001ezl.2	-	3	691	c.183G>T	c.(181-183)CAG>CAT	p.Q61H		NM_002966	NP_002957	P60903	S10AA_HUMAN	S100 calcium binding protein A10	61	Ancestral calcium site.				signal transduction		calcium ion binding|receptor binding				0	Melanoma(130;0.0648)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CATCTCTACACTGGTCCAGGT	0.423000													26	124					3.28513e-13	2.00598e-12	1	0
TCHH	7062	broad.mit.edu	37	1	152081918	152081918	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:152081918G>A	uc001ezp.2	-	2	3775	c.3775C>T	c.(3775-3777)CGC>TGC	p.R1259C	TCHH_uc009wne.1_Missense_Mutation_p.R1259C	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1259					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTGTCGCGCAGCTGGGAA	0.537000													29	93					0	0	0	0
FCRL3	115352	broad.mit.edu	37	1	157666098	157666098	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:157666098C>T	uc001frb.2	-	7	1156	c.864G>A	c.(862-864)GTG>GTA	p.V288V	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.V288V|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.V14V|FCRL3_uc001frc.1_Silent_p.V288V	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	288	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TCTCTAGATTCACATTAGACA	0.522000													14	97					0	0	0	0
PIGM	93183	broad.mit.edu	37	1	160001164	160001164	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:160001164G>A	uc001fuv.1	-	1	620	c.366C>T	c.(364-366)CGC>CGT	p.R122R		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	122	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CACAAGCCTGGCGGCGCCCCA	0.577000													12	64					0	0	0	0
DDR2	4921	broad.mit.edu	37	1	162737067	162737067	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:162737067G>C	uc001gcf.2	+	12	1676	c.1211G>C	c.(1210-1212)TGC>TCC	p.C404S	DDR2_uc001gcg.2_Missense_Mutation_p.C404S	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	404	Helical; (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CTGATTGGCTGCTTGGTGGCC	0.483000													30	165					0	0	0	0
DUSP27	92235	broad.mit.edu	37	1	167088617	167088617	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:167088617A>G	uc001geb.1	+	4	569	c.569A>G	c.(568-570)GAG>GGG	p.E190G		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	190					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CTGGGTGTAGAGGTGGATGAC	0.557000													15	47					0	0	0	0
DCAF6	55827	broad.mit.edu	37	1	167971802	167971802	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:167971802G>A	uc001gew.2	+	8	1228	c.986G>A	c.(985-987)CGA>CAA	p.R329Q	DCAF6_uc001gev.2_Missense_Mutation_p.R329Q|DCAF6_uc001gex.2_Missense_Mutation_p.R329Q|DCAF6_uc010plk.1_Missense_Mutation_p.R298Q|DCAF6_uc001gey.2_Missense_Mutation_p.R182Q	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	329					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAGAGTGAACGAGAACGAGAT	0.338000													12	84					0	0	0	0
TIPRL	261726	broad.mit.edu	37	1	168153231	168153231	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:168153231G>A	uc001gfg.2	+	2	341	c.196G>A	c.(196-198)GAG>AAG	p.E66K	TIPRL_uc001gfh.2_Missense_Mutation_p.E66K|TIPRL_uc001gff.2_Missense_Mutation_p.E66K	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	66					DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					CTTTGGAATTGAGTTCAATGC	0.428000													17	72					0	0	0	0
ASTN1	460	broad.mit.edu	37	1	177000057	177000057	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:177000057G>T	uc001glc.2	-	4	1109	c.897C>A	c.(895-897)AAC>AAA	p.N299K	ASTN1_uc001glb.1_Missense_Mutation_p.N299K|ASTN1_uc001gld.1_Missense_Mutation_p.N299K|ASTN1_uc009wwx.1_Missense_Mutation_p.N299K|ASTN1_uc001gle.3_RNA|MIR488_hsa-mir-488|MI0003123_5'Flank	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	299					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CTTTATACTTGTTCATCAGTG	0.443000													9	67					7.48243e-07	4.48487e-06	1	0
CFHR4	10877	broad.mit.edu	37	1	196882040	196882040	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:196882040C>A	uc001gto.2	+	3	496	c.427C>A	c.(427-429)CCA>ACA	p.P143T	CFHR4_uc009wyy.2_Missense_Mutation_p.P389T|CFHR4_uc001gtp.2_Missense_Mutation_p.P390T	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	143	Sushi 2.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						GTCAGCACAACCAATTTGCAT	0.303000													42	75					5.85753e-14	3.59925e-13	1	0
KIF21B	23046	broad.mit.edu	37	1	200944711	200944711	+	Silent	SNP	G	A	A	rs150393728		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:200944711G>A	uc001gvs.1	-	33	4847	c.4530C>T	c.(4528-4530)CTC>CTT	p.L1510L	KIF21B_uc001gvr.1_Silent_p.L1497L|KIF21B_uc009wzl.1_Silent_p.L1510L|KIF21B_uc010ppn.1_Silent_p.L1497L	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1510	WD 5.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCTGGATGGCGAGACACTCGA	0.607000													9	77					0	0	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209949072	209949072	+	Silent	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:209949072C>A	uc001hho.2	+	11	1334	c.1044C>A	c.(1042-1044)TCC>TCA	p.S348S	TRAF3IP3_uc001hhl.2_Silent_p.S328S|TRAF3IP3_uc001hhm.1_Silent_p.S348S|TRAF3IP3_uc001hhn.2_Silent_p.S328S|TRAF3IP3_uc009xcr.2_Silent_p.S348S	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	348	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		TGCTTCAGTCCAAACTGCAGG	0.582000													8	40					0.000157383	0.000899202	1	0
TMEM206	55248	broad.mit.edu	37	1	212553337	212553337	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:212553337G>A	uc001hjc.3	-	5	706	c.538C>T	c.(538-540)CGG>TGG	p.R180W	TMEM206_uc010pte.1_Missense_Mutation_p.R241W	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	180	Extracellular (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		ACCAGCTCCCGCTTTTTCACT	0.537000													34	72					0	0	0	0
ESRRG	2104	broad.mit.edu	37	1	216737606	216737606	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:216737606C>A	uc001hkw.1	-	5	983	c.817G>T	c.(817-819)GAC>TAC	p.D273Y	ESRRG_uc001hky.1_Missense_Mutation_p.D250Y|ESRRG_uc009xdp.1_Missense_Mutation_p.D250Y|ESRRG_uc001hkz.1_Missense_Mutation_p.D211Y|ESRRG_uc010puc.1_Missense_Mutation_p.D250Y|ESRRG_uc001hla.1_Missense_Mutation_p.D250Y|ESRRG_uc001hlb.1_Missense_Mutation_p.D250Y|ESRRG_uc010pud.1_Missense_Mutation_p.D81Y|ESRRG_uc001hlc.1_Missense_Mutation_p.D250Y|ESRRG_uc001hld.1_Missense_Mutation_p.D250Y|ESRRG_uc001hkx.1_Missense_Mutation_p.D285Y|ESRRG_uc009xdo.1_Missense_Mutation_p.D250Y|ESRRG_uc001hle.1_Missense_Mutation_p.D250Y	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	273					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	AACTCTCGGTCGGCCAAGTCA	0.458000													17	85					5.3912e-06	3.21171e-05	1	0
ADARB2	105	broad.mit.edu	37	10	1405267	1405267	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr10:1405267G>A	uc009xhq.2	-	3	1407	c.1033C>T	c.(1033-1035)CCC>TCC	p.P345S		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	345					mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GCGTGGCCGGGCATCTGGATG	0.761000													5	12					0	0	0	0
TTC18	118491	broad.mit.edu	37	10	75104930	75104930	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr10:75104930G>T	uc009xrc.2	-	6	623	c.502C>A	c.(502-504)CTA>ATA	p.L168I	TTC18_uc001jty.2_Missense_Mutation_p.L168I|TTC18_uc009xrd.1_5'UTR	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	168							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ACCTTCAGTAGATTGCCCCCT	0.468000													32	123					5.91797e-21	3.68271e-20	1	0
MYOZ1	58529	broad.mit.edu	37	10	75397509	75397509	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr10:75397509C>T	uc001jur.2	-	3	610	c.245G>A	c.(244-246)AGC>AAC	p.S82N		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	82					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CACCATTGAGCTGTCAGAGAA	0.483000													25	108					0	0	0	0
CNNM1	26507	broad.mit.edu	37	10	101120712	101120712	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr10:101120712C>T	uc001kpp.3	+	3	2127	c.1838C>T	c.(1837-1839)ACA>ATA	p.T613I	CNNM1_uc009xwe.2_Missense_Mutation_p.T613I|CNNM1_uc010qpi.1_Missense_Mutation_p.T613I|CNNM1_uc009xwf.2_Missense_Mutation_p.T613I|CNNM1_uc009xwg.2_Missense_Mutation_p.T13I	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	613					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		CTGCTAGCCACACACCGCTTC	0.383000													16	57					0	0	0	0
GBF1	8729	broad.mit.edu	37	10	104122290	104122290	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr10:104122290T>C	uc001kux.1	+	15	1982	c.1742T>C	c.(1741-1743)CTA>CCA	p.L581P	GBF1_uc001kuy.1_Missense_Mutation_p.L581P|GBF1_uc001kuz.1_Missense_Mutation_p.L582P	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	581					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CTTGATGCCCTATTGACAGTG	0.488000													3	148					0	0	0	0
OR52E2	119678	broad.mit.edu	37	11	5080740	5080740	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:5080740C>T	uc010qyw.1	-	1	118	c.118G>A	c.(118-120)GCA>ACA	p.A40T		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCTATGAGTGCGATCATGTAC	0.512000													13	52					0	0	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111302	7111302	+	Silent	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:7111302T>C	uc001mfc.2	+	1	1138	c.951T>C	c.(949-951)GAT>GAC	p.D317D		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	317	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ACTCACCCGATGCCTACAGCG	0.687000													7	27					0	0	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159705	18159705	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:18159705G>C	uc001mnu.2	+	3	1317	c.956G>C	c.(955-957)AGA>ACA	p.R319T		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	319	Cytoplasmic (Potential).			R -> K (in Ref. 2; AAL86878).		integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TCGGGAAGCAGATTGGAGCAG	0.542000													4	56					0	0	0	0
SLC1A2	6506	broad.mit.edu	37	11	35308409	35308409	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:35308409G>A	uc001mwd.2	-	8	1773	c.1181C>T	c.(1180-1182)GCA>GTA	p.A394V	SLC1A2_uc001mwe.2_Missense_Mutation_p.A385V|SLC1A2_uc010rev.1_Missense_Mutation_p.A394V	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	394					D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	GTTAATGGTTGCTCCAACAGG	0.468000													24	190					0	0	0	0
OR8J1	219477	broad.mit.edu	37	11	56128260	56128260	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:56128260G>C	uc010rjh.1	+	1	538	c.538G>C	c.(538-540)GAT>CAT	p.D180H		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTTTTACTGTGATAATGTTCC	0.343000													21	62					0	0	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431506	56431506	+	Silent	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:56431506G>C	uc010rjm.1	+	1	345	c.345G>C	c.(343-345)CTG>CTC	p.L115L		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTATGTCCTGGCAGCCATGG	0.498000													31	213					0	0	0	0
INTS4	92105	broad.mit.edu	37	11	77614629	77614629	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr11:77614629A>G	uc001oys.2	-	17	2082	c.2054T>C	c.(2053-2055)TTG>TCG	p.L685S	C11orf67_uc001oyp.2_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	685					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CTTCAAATACAAAGGGGCAGC	0.478000													3	53					0	0	0	0
KCNA6	3742	broad.mit.edu	37	12	4919817	4919817	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:4919817C>T	uc001qng.2	+	1	1476	c.610C>T	c.(610-612)CGA>TGA	p.R204*		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	204						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGTAGATGGTCGAGGTGGAAA	0.542000										HNSCC(72;0.22)			11	60					0	0	0	0
KCNA1	3736	broad.mit.edu	37	12	5020755	5020755	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:5020755C>T	uc001qnh.2	+	2	1316	c.211C>T	c.(211-213)CGC>TGC	p.R71C		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	71					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GAAACGCATGCGCTACTTCGA	0.632000													27	105					0	0	0	0
USP5	8078	broad.mit.edu	37	12	6970649	6970649	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:6970649A>G	uc001qri.3	+	13	1600	c.1541A>G	c.(1540-1542)GAG>GGG	p.E514G	USP5_uc001qrh.3_Missense_Mutation_p.E514G	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	514					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						CAAGCCGAAGAGGAGAAGATG	0.597000													20	94					0	0	0	0
OR8S1	341568	broad.mit.edu	37	12	48921776	48921776	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:48921776G>A	uc010slu.1	+	2	970	c.970G>A	c.(970-972)GAA>AAA	p.E324K		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	324	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGCCTTCACCGAAGGCCGCAG	0.647000													18	27					0	0	0	0
USP15	9958	broad.mit.edu	37	12	62749159	62749159	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:62749159A>G	uc001src.1	+	8	827	c.818A>G	c.(817-819)AAC>AGC	p.N273S	USP15_uc001srb.1_Missense_Mutation_p.N244S	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	273					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		GCTTATAAGAACTATGATTAT	0.348000													7	31					0	0	0	0
EPYC	1833	broad.mit.edu	37	12	91366624	91366624	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:91366624G>C	uc001tbk.2	-	4	567	c.474C>G	c.(472-474)ATC>ATG	p.I158M		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	158	LRR 1.				female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						CATTTTTGTTGATCTTTTTAA	0.388000													6	110					0	0	0	0
TRPV4	59341	broad.mit.edu	37	12	110246181	110246181	+	Missense_Mutation	SNP	C	T	T	rs139300843		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:110246181C>T	uc001tpj.1	-	2	574	c.479G>A	c.(478-480)CGG>CAG	p.R160Q	TRPV4_uc001tpg.1_Missense_Mutation_p.R126Q|TRPV4_uc001tph.1_Missense_Mutation_p.R160Q|TRPV4_uc001tpi.1_Missense_Mutation_p.R160Q|TRPV4_uc001tpk.1_Missense_Mutation_p.R160Q|TRPV4_uc001tpl.1_Missense_Mutation_p.R160Q	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	160	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGTGGAGCCCCGGGACACGAT	0.612000													13	36					0	0	0	0
RPH3A	22895	broad.mit.edu	37	12	113307581	113307581	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr12:113307581A>G	uc010syl.1	+	9	990	c.628A>G	c.(628-630)AGG>GGG	p.R210G	RPH3A_uc001ttz.2_Missense_Mutation_p.R210G|RPH3A_uc001tty.2_Missense_Mutation_p.R206G|RPH3A_uc009zwe.1_Missense_Mutation_p.R206G|RPH3A_uc010sym.1_Missense_Mutation_p.R161G|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	210	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		TGAAGATAGGAGGGGCCCGGG	0.463000													3	139					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71444809	71444809	+	Silent	SNP	T	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr14:71444809T>A	uc001xmo.2	+	6	2201	c.1755T>A	c.(1753-1755)GGT>GGA	p.G585G	PCNX_uc001xmn.3_Silent_p.G585G|PCNX_uc010are.1_Silent_p.G585G	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	585						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GCTTTCGAGGTGTTTCTGGTA	0.483000													15	99					0	0	0	0
DCAF4	26094	broad.mit.edu	37	14	73422322	73422322	+	Missense_Mutation	SNP	G	A	A	rs141315052	byFrequency	TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr14:73422322G>A	uc001xng.2	+	12	1317	c.1097G>A	c.(1096-1098)CGC>CAC	p.R366H	DCAF4_uc001xnj.2_Missense_Mutation_p.R360H|DCAF4_uc010ttr.1_Missense_Mutation_p.R345H|DCAF4_uc001xnh.2_Missense_Mutation_p.R266H|DCAF4_uc010tts.1_Missense_Mutation_p.R306H|DCAF4_uc010ttt.1_Missense_Mutation_p.R152H|DCAF4_uc001xni.2_Missense_Mutation_p.R196H|DCAF4_uc001xnk.2_Missense_Mutation_p.R366H	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	366						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AAGGCCACCCGCCTGTTTCAT	0.517000													42	238					0	0	0	0
TMEM63C	57156	broad.mit.edu	37	14	77722968	77722968	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr14:77722968G>C	uc001xtf.2	+	24	2532	c.2320G>C	c.(2320-2322)GAG>CAG	p.E774Q	TMEM63C_uc010asq.1_Missense_Mutation_p.E774Q	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	774						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CCAGCCGGAAGAGGGAGAAGA	0.607000													60	131					0	0	0	0
BTBD7	55727	broad.mit.edu	37	14	93723663	93723663	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr14:93723663T>G	uc001ybo.2	-	6	1812	c.1486A>C	c.(1486-1488)AAA>CAA	p.K496Q	BTBD7_uc010aur.2_Missense_Mutation_p.K21Q|BTBD7_uc010two.1_Missense_Mutation_p.K316Q|BTBD7_uc001ybp.2_Missense_Mutation_p.K145Q|BTBD7_uc001ybq.3_Missense_Mutation_p.K411Q	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	496										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		ACACCTCTTTTGTTCACACTA	0.408000													8	83					0	0	0	0
DICER1	23405	broad.mit.edu	37	14	95571506	95571506	+	Silent	SNP	T	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr14:95571506T>A	uc001ydw.2	-	21	3353	c.3171A>T	c.(3169-3171)ATA>ATT	p.I1057I	DICER1_uc010avh.1_5'UTR|DICER1_uc001ydv.2_Silent_p.I1047I|DICER1_uc001ydx.2_Silent_p.I1057I|DICER1_uc001ydy.1_5'Flank	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1057					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		GGCGATAAAGTATGCTGGGGA	0.488000			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				28	169					0	0	0	0
MYEF2	50804	broad.mit.edu	37	15	48446066	48446066	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr15:48446066C>A	uc001zwi.3	-	10	1134	c.1010G>T	c.(1009-1011)GGA>GTA	p.G337V	MYEF2_uc001zwh.3_5'Flank|MYEF2_uc001zwj.3_Missense_Mutation_p.G337V|MYEF2_uc001zwl.2_Missense_Mutation_p.G177V	NM_016132	NP_057216	Q9P2K5	MYEF2_HUMAN	myelin expression factor 2	337	Gly-rich.				transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding|nucleotide binding|RNA binding			lung(2)|ovary(1)	3		all_lung(180;0.00217)		all cancers(107;3.73e-10)|GBM - Glioblastoma multiforme(94;7.81e-07)		CGGACCAAGTCCCATCCCAAT	0.388000													8	23					0.000274275	0.00154894	1	0
ABCC6P1	653190	broad.mit.edu	37	16	18602585	18602585	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr16:18602585C>T	uc002dfg.2	+	8	983	c.783C>T	c.(781-783)CTC>CTT	p.L261L	ABCC6P1_uc010vam.1_Silent_p.L204L	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						CCCTCAGCCTCGTCATCAGTG	0.587000													28	119					0	0	0	0
LAT	27040	broad.mit.edu	37	16	28997738	28997738	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr16:28997738C>T	uc002dsd.2	+	5	633	c.281C>T	c.(280-282)ACG>ATG	p.T94M	uc010vct.1_Intron|LAT_uc010vdj.1_Missense_Mutation_p.T130M|LAT_uc002dsb.2_Missense_Mutation_p.T94M|LAT_uc002dsc.2_Missense_Mutation_p.T93M|LAT_uc010vdk.1_Missense_Mutation_p.T94M|LAT_uc010vdl.1_Missense_Mutation_p.T93M	NM_014387	NP_055202	O43561	LAT_HUMAN	linker for activation of T cells isoform a	94	Cytoplasmic (Potential).				calcium-mediated signaling|integrin-mediated signaling pathway|mast cell degranulation|platelet activation|Ras protein signal transduction|regulation of T cell activation|T cell receptor signaling pathway	immunological synapse|integral to membrane|intracellular|membrane raft	SH3/SH2 adaptor activity				0		Hepatocellular(780;0.244)				TCCCACCGGACGCCATCTTCC	0.627000													22	89					0	0	0	0
CDH1	999	broad.mit.edu	37	16	68853324	68853324	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr16:68853324C>A	uc002ewg.1	+	11	1831	c.1707C>A	c.(1705-1707)GAC>GAA	p.D569E	CDH1_uc010vlj.1_Intron|CDH1_uc010cfg.1_Missense_Mutation_p.D508E	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	569	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding			breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		TAGCTACAGACAATGGTAAGG	0.522000			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				11	32					5.50884e-06	3.24225e-05	1	0
ADAD2	161931	broad.mit.edu	37	16	84229512	84229512	+	Missense_Mutation	SNP	G	C	C	rs142081193	byFrequency	TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr16:84229512G>C	uc002fhr.2	+	7	1258	c.1144G>C	c.(1144-1146)GTG>CTG	p.V382L	ADAD2_uc002fhq.2_Missense_Mutation_p.V464L|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	382	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						TGTGTGCTACGTGGCGCCCTC	0.716000													5	32					0	0	0	0
GAS8	2622	broad.mit.edu	37	16	90103725	90103725	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr16:90103725A>C	uc002fqi.1	+	7	964	c.842A>C	c.(841-843)GAC>GCC	p.D281A	GAS8_uc010vps.1_Missense_Mutation_p.D256A|GAS8_uc002fqh.2_Missense_Mutation_p.D198A|GAS8_uc010vpt.1_3'UTR|GAS8_uc010vpu.1_3'UTR|GAS8_uc010vpv.1_Missense_Mutation_p.D252A|GAS8_uc010cjc.1_Missense_Mutation_p.D198A|GAS8_uc010vpw.1_Missense_Mutation_p.D198A|GAS8_uc002fqj.1_Missense_Mutation_p.D89A	NM_001481	NP_001472	O95995	GAS8_HUMAN	growth arrest-specific 8	281	Potential.				negative regulation of cell proliferation|sperm motility	cilium|Golgi apparatus|microtubule|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.029)		CGCCTGGCAGACCCTCTCCAG	0.582000													14	31					0	0	0	0
PIK3R5	23533	broad.mit.edu	37	17	8793324	8793324	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr17:8793324C>T	uc002glt.2	-	8	844	c.777G>A	c.(775-777)GCG>GCA	p.A259A	PIK3R5_uc010vuz.1_Silent_p.A259A|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Intron|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	259				AKTLAELEDIFTETAEAQELASGIGDAAEARRWLRTKLQAV GEKAGFPGVLDTAKPGKLHTIPIPVARCYTYSWSQDS -> TLQNQGSSIPSPSLSPGATPTAGARTALTSCRKSCSRNRSC SSQGSWEMMKRRKRRRRRWRRTWKLMGTVPREIPCSP (in Ref. 6; AAW63122).	platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TTTCTCCCACCGCCTGCAGCT	0.577000													20	46					0	0	0	0
MYO9B	4650	broad.mit.edu	37	19	17322582	17322582	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:17322582A>T	uc010eak.2	+	39	6209	c.6057A>T	c.(6055-6057)GAA>GAT	p.E2019D	MYO9B_uc002nfi.2_Missense_Mutation_p.E2019D|MYO9B_uc002nfm.1_Missense_Mutation_p.E179D	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	2019	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GGGCCTCGGAAGGTCAGTATT	0.677000													11	50					0	0	0	0
ZNF675	171392	broad.mit.edu	37	19	23844924	23844924	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:23844924T>G	uc002nri.2	-	3	400	c.218A>C	c.(217-219)GAA>GCA	p.E73A		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	73	KRAB.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ACCTGGGGGTTCATTCACCAT	0.418000													28	98					0	0	0	0
TMEM147	10430	broad.mit.edu	37	19	36037696	36037696	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:36037696G>A	uc002oaj.1	+	4	427	c.330G>A	c.(328-330)GAG>GAA	p.E110E	uc010eec.1_5'Flank|uc002oag.2_5'Flank|TMEM147_uc002oai.1_Silent_p.E61E|TMEM147_uc002oak.1_Missense_Mutation_p.S20N	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	110	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CCACTGCTGAGCTTATTATGT	0.602000													7	73					0	0	0	0
APLP1	333	broad.mit.edu	37	19	36365411	36365411	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:36365411C>A	uc002oce.2	+	9	1200	c.1062C>A	c.(1060-1062)TTC>TTA	p.F354L	APLP1_uc010xsz.1_Missense_Mutation_p.F315L|APLP1_uc002ocf.2_Missense_Mutation_p.F354L|APLP1_uc002ocg.2_Missense_Mutation_p.F257L|APLP1_uc010xta.1_Missense_Mutation_p.F348L	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	354	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCAGCACTTCCAGTCCATTC	0.617000													52	129					3.50607e-19	2.16799e-18	1	0
LTBP4	8425	broad.mit.edu	37	19	41129882	41129882	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:41129882G>A	uc002ooh.1	+	30	3928	c.3928G>A	c.(3928-3930)GGC>AGC	p.G1310S	LTBP4_uc002oog.1_Missense_Mutation_p.G1273S|LTBP4_uc002ooi.1_Missense_Mutation_p.G1243S|LTBP4_uc002ooj.1_Missense_Mutation_p.G183S|LTBP4_uc002ook.1_Missense_Mutation_p.G444S|LTBP4_uc002ool.1_Missense_Mutation_p.G322S|LTBP4_uc010xvp.1_Missense_Mutation_p.G70S	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1310	EGF-like 14; calcium-binding (Potential).				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGTGAGGGCGGCCGCTGTGT	0.602000													9	32					0	0	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570690	47570690	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:47570690G>A	uc002pga.3	-	15	2873	c.2835C>T	c.(2833-2835)CCC>CCT	p.P945P	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	945							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GAGGGTGCCCGGGGAGTGGGT	0.677000													37	185					0	0	0	0
ZNF677	342926	broad.mit.edu	37	19	53740463	53740463	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr19:53740463T>G	uc002qbf.1	-	5	1702	c.1517A>C	c.(1516-1518)AAG>ACG	p.K506T	ZNF677_uc002qbg.1_Missense_Mutation_p.K506T	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	506	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		ATGGATTTTCTTATGCTGAGT	0.388000													5	74					0	0	0	0
TPO	7173	broad.mit.edu	37	2	1459959	1459959	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:1459959G>A	uc002qww.2	+	7	815	c.724G>A	c.(724-726)GCG>ACG	p.A242T	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.A242T|TPO_uc002qwr.2_Missense_Mutation_p.A242T|TPO_uc002qwx.2_Missense_Mutation_p.A242T|TPO_uc010yio.1_Missense_Mutation_p.A242T|TPO_uc010yip.1_Missense_Mutation_p.A242T	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	242	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity	p.A242A(1)		ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCACGACATCGCGTTCACACC	0.498000													7	58					0	0	0	0
PXDN	7837	broad.mit.edu	37	2	1648500	1648500	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:1648500G>A	uc002qxa.2	-	18	3697	c.3633C>T	c.(3631-3633)ATC>ATT	p.I1211I		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1211					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GAAACAGGTCGATGTTGAGTG	0.498000													10	32					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530510	80530510	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:80530510C>T	uc002sok.1	-	2	705	c.435G>A	c.(433-435)TCG>TCA	p.S145S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	145	LRR 3.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GCTTGTTGTACGAGAGGTCCA	0.632000										HNSCC(69;0.2)			13	90					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90458636	90458636	+	RNA	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:90458636A>G	uc010fhm.2	+	31		c.4255A>G								Parts of antibodies, mostly variable regions.																		AAGATTTTGCAACTTATTACT	0.512000													28	840					0	0	0	0
ANKRD36	375248	broad.mit.edu	37	2	97869931	97869931	+	Missense_Mutation	SNP	A	T	T	rs76309140		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:97869931A>T	uc010yva.1	+	50	3236	c.2992A>T	c.(2992-2994)ACA>TCA	p.T998S	ANKRD36_uc002sxp.3_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	998											0						CATTCAGGCTACAAGTGATGA	0.289000													5	37					0	0	0	0
EIF5B	9669	broad.mit.edu	37	2	99980764	99980764	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:99980764A>C	uc002tab.2	+	6	1352	c.1168A>C	c.(1168-1170)AAA>CAA	p.K390Q		NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	390					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						aagagaaaggaaaaagcaaaa	0.274000													11	104					0	0	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290462	132290462	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:132290462A>G	uc002tta.2	+	6	954	c.902A>G	c.(901-903)GAA>GGA	p.E301G	CCDC74A_uc002ttb.2_Missense_Mutation_p.E235G	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	301										skin(1)	1						TCCCTCCTGGAAGGGAGCCAG	0.692000													13	56					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141260621	141260621	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:141260621A>G	uc002tvj.1	-	54	9545	c.8573T>C	c.(8572-8574)CTT>CCT	p.L2858P		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2858	Extracellular (Potential).|LDL-receptor class A 19.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTATTTAGAAGACACCGCCC	0.388000										TSP Lung(27;0.18)			19	71					0	0	0	0
UPP2	151531	broad.mit.edu	37	2	158991382	158991382	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:158991382C>T	uc002tzp.2	+	7	1128	c.934C>T	c.(934-936)CGG>TGG	p.R312W	UPP2_uc002tzo.2_Missense_Mutation_p.R369W	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	312					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						CATCAGACGGCGGCTTGGACT	0.493000													8	90					0	0	0	0
B3GALT1	8708	broad.mit.edu	37	2	168725997	168725997	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:168725997C>A	uc002udz.1	+	2	799	c.448C>A	c.(448-450)CAT>AAT	p.H150N		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	150	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						TGACTCCTACCATAACCTTAC	0.428000													9	51					0.000274275	0.00154894	1	0
TTN	7273	broad.mit.edu	37	2	179620992	179620992	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:179620992G>C	uc010zfh.1	-	44	10922	c.10698C>G	c.(10696-10698)GAC>GAG	p.D3566E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3580							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCTCCACAGTCATTGTGTA	0.388000													32	111					0	0	0	0
SH3BP4	23677	broad.mit.edu	37	2	235950011	235950011	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:235950011T>A	uc002vvp.2	+	4	991	c.598T>A	c.(598-600)TCC>ACC	p.S200T	SH3BP4_uc010fym.2_Missense_Mutation_p.S200T|SH3BP4_uc002vvq.2_Missense_Mutation_p.S200T	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	200					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		CGCAGGTACATCCTCCTTCAC	0.537000													31	88					0	0	0	0
ANO7	50636	broad.mit.edu	37	2	242162677	242162677	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:242162677G>A	uc002wax.2	+	22	2663	c.2560G>A	c.(2560-2562)GTC>ATC	p.V854I		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	854	Helical; (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CCTGGCCTTCGTCATTGTGTT	0.567000													44	134					0	0	0	0
C20orf12	55184	broad.mit.edu	37	20	18371073	18371073	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr20:18371073C>T	uc010zsa.1	-	18	2106	c.1897G>A	c.(1897-1899)GGA>AGA	p.G633R	C20orf12_uc010zrz.1_Missense_Mutation_p.G152R|C20orf12_uc002wqp.3_Missense_Mutation_p.G324R|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.G500R|C20orf12_uc002wqq.3_Missense_Mutation_p.G614R	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	441	ANK 1.					intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				CCCGTGGGTCCGACTTCCTTC	0.488000													16	130					0	0	0	0
PTPRT	11122	broad.mit.edu	37	20	40710552	40710552	+	Silent	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr20:40710552A>G	uc002xkg.2	-	30	4426	c.4242T>C	c.(4240-4242)CGT>CGC	p.R1414R	PTPRT_uc010ggj.2_Silent_p.R1433R|PTPRT_uc010ggi.2_Silent_p.R617R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1414	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ATTTGTTGTTACGCAGTGTTT	0.502000													27	103					0	0	0	0
TUBB1	81027	broad.mit.edu	37	20	57598597	57598597	+	Missense_Mutation	SNP	G	A	A	rs147465283		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr20:57598597G>A	uc002yak.2	+	3	488	c.219G>A	c.(217-219)ATG>ATA	p.M73I		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	73					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	CTGGGACGATGGACAGCATTC	0.463000													30	106					0	0	0	0
C21orf99	149992	broad.mit.edu	37	21	14439185	14439185	+	RNA	SNP	C	A	A	rs112098339		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr21:14439185C>A	uc002yja.3	+	10		c.2703C>A				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TGACTTTAAACCAAGAAGAAG	0.269000													5	25					0.000602214	0.0033814	1	0
SERPIND1	3053	broad.mit.edu	37	22	21134259	21134259	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134259C>T	uc002ztb.1	+	2	726	c.659C>T	c.(658-660)TCA>TTA	p.S220L	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.S248L	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	220					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	ACACTGCGGTCAGTCAATGAC	0.433000													90	321					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134279	21134279	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134279C>T	uc002ztb.1	+	2	746	c.679C>T	c.(679-681)CAG>TAG	p.Q227*	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Nonsense_Mutation_p.Q255*	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	227					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	CCTTTATATCCAGAAGCAGTT	0.438000													135	319					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134359	21134359	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134359C>T	uc002ztb.1	+	2	826	c.759C>T	c.(757-759)TTC>TTT	p.F253F	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.F281F	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	253					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TAGCTGACTTCTCAGACCCTG	0.433000													389	575					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134379	21134379	+	Nonsense_Mutation	SNP	C	G	G	rs76882693		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134379C>G	uc002ztb.1	+	2	846	c.779C>G	c.(778-780)TCA>TGA	p.S260*	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Nonsense_Mutation_p.S288*	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	260					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	GCCTTCATATCAAAAACCAAC	0.438000													404	531					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134470	21134470	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134470C>T	uc002ztb.1	+	2	937	c.870C>T	c.(868-870)CTC>CTT	p.L290L	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.L318L	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	290					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TGATGATTCTCAACTGCATCT	0.418000													381	542					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134479	21134479	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:21134479C>T	uc002ztb.1	+	2	946	c.879C>T	c.(877-879)ATC>ATT	p.I293I	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.I321I	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	293					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TCAACTGCATCTACTTCAAAG	0.423000													370	542					0	0	0	0
SUSD2	56241	broad.mit.edu	37	22	24582117	24582117	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:24582117G>A	uc002zzn.1	+	9	1517	c.1473G>A	c.(1471-1473)ACG>ACA	p.T491T		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	491	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AGCCCGGGACGATGTCCAACG	0.662000													4	21					0	0	0	0
XRCC6	2547	broad.mit.edu	37	22	42032124	42032124	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:42032124A>G	uc003bao.1	+	4	273	c.203A>G	c.(202-204)CAA>CGA	p.Q68R	XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Missense_Mutation_p.Q18R|XRCC6_uc003baq.1_Missense_Mutation_p.Q68R|XRCC6_uc003bar.1_Missense_Mutation_p.Q68R|XRCC6_uc003bas.1_Missense_Mutation_p.Q18R	NM_001469	NP_001460	P12956	XRCC6_HUMAN	ATP-dependent DNA helicase II, 70 kDa subunit	68					DNA ligation|double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|provirus integration|telomere maintenance|transcription, DNA-dependent	DNA-dependent protein kinase-DNA ligase 4 complex|Ku70:Ku80 complex|membrane fraction|nuclear telomere cap complex|transcription factor complex	5'-deoxyribose-5-phosphate lyase activity|ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|transcription regulatory region DNA binding			skin(2)|ovary(1)|lung(1)|kidney(1)	5						CAGTGTATCCAAAGTGTGTAC	0.338000								Direct_reversal_of_damage|NHEJ					7	34					0	0	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50664276	50664276	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:50664276C>T	uc003bkb.1	-	10	2442	c.1930G>A	c.(1930-1932)GTT>ATT	p.V644I	TUBGCP6_uc010har.1_Missense_Mutation_p.V644I|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	644					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ATGCGCCCAACGTAGACGGCA	0.607000													5	36					0	0	0	0
TRANK1	9881	broad.mit.edu	37	3	36897578	36897578	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:36897578A>G	uc003cgj.2	-	3	2155	c.1853T>C	c.(1852-1854)CTT>CCT	p.L618P		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1168					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGACTTGGAAAGCTCAATGAA	0.483000													37	115					0	0	0	0
MST1	4485	broad.mit.edu	37	3	49721591	49721591	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:49721591G>A	uc003cxg.2	-	18	2120	c.2048C>T	c.(2047-2049)ACC>ATC	p.T683I		NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	669	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GCAGTTGTGGGTAAAGCAGGC	0.562000													8	36					0	0	0	0
EPHA3	2042	broad.mit.edu	37	3	89521703	89521703	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:89521703A>T	uc003dqy.2	+	16	3005	c.2780A>T	c.(2779-2781)CAC>CTC	p.H927L	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	927	Cytoplasmic (Potential).|SAM.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TGGACAGCACACTGCAAGGAA	0.428000										TSP Lung(6;0.00050)			16	149					0	0	0	0
BOC	91653	broad.mit.edu	37	3	112991529	112991529	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:112991529C>G	uc003dzx.2	+	7	1561	c.940C>G	c.(940-942)CTC>GTC	p.L314V	BOC_uc003dzy.2_Missense_Mutation_p.L314V|BOC_uc003dzz.2_Missense_Mutation_p.L314V|BOC_uc003eab.2_Missense_Mutation_p.L15V	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	314	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			AGCGGTCATCCTCTACAATGT	0.582000													7	41					0	0	0	0
C3orf15	89876	broad.mit.edu	37	3	119459395	119459395	+	Splice_Site	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:119459395G>T	uc003ede.3	+	13	1611	c.1534_splice	c.e13-1	p.M512_splice	C3orf15_uc010hqy.1_Splice_Site_p.M512_splice|C3orf15_uc010hqz.2_Splice_Site_p.M450_splice|C3orf15_uc011bjd.1_Splice_Site_p.M386_splice|C3orf15_uc011bje.1_Splice_Site_p.M492_splice|C3orf15_uc010hra.1_Splice_Site_p.M273_splice	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha							mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		ATTTGATACAGATGTTTGAAG	0.468000													11	75					9.31168e-06	5.44761e-05	1	0
GOLGB1	2804	broad.mit.edu	37	3	121409852	121409852	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:121409852C>T	uc003eei.3	-	14	8470	c.8344G>A	c.(8344-8346)GAT>AAT	p.D2782N	GOLGB1_uc010hrc.2_Missense_Mutation_p.D2787N|GOLGB1_uc003eej.3_Missense_Mutation_p.D2748N	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2782	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		AGAAGAGCATCTCTCTCTCTG	0.418000													7	76					0	0	0	0
C3orf37	56941	broad.mit.edu	37	3	129009622	129009622	+	Missense_Mutation	SNP	A	G	G	rs142370950		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:129009622A>G	uc003elt.2	+	4	516	c.428A>G	c.(427-429)TAT>TGT	p.Y143C	C3orf37_uc003elu.2_Intron|C3orf37_uc003elv.2_Missense_Mutation_p.Y143C|C3orf37_uc003elw.2_Missense_Mutation_p.Y143C	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	143										ovary(1)	1						TACTTCATCTATTTTCCTCAA	0.413000													11	73					0	0	0	0
CEP63	80254	broad.mit.edu	37	3	134278043	134278043	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:134278043A>C	uc003eqo.1	+	15	2174	c.1725A>C	c.(1723-1725)AAA>AAC	p.K575N	CEP63_uc003eql.1_Intron|CEP63_uc003eqm.2_Intron|CEP63_uc003eqn.1_Intron	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	575					cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						AGCACTACAAAACAGATCTTC	0.443000													53	168					0	0	0	0
ATR	545	broad.mit.edu	37	3	142180856	142180856	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:142180856T>A	uc003eux.3	-	42	7240	c.7118A>T	c.(7117-7119)GAA>GTA	p.E2373V	ATR_uc003euy.1_Missense_Mutation_p.E259V	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2373	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						AATCCCACATTCATCATTTAG	0.313000								Other_conserved_DNA_damage_response_genes					47	189					0	0	0	0
LRRC15	131578	broad.mit.edu	37	3	194080176	194080176	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:194080176T>C	uc003ftu.2	-	2	1683	c.1597A>G	c.(1597-1599)ACC>GCC	p.T533A	LRRC15_uc003ftt.2_Missense_Mutation_p.T539A	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	533	Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		TGGGCCTGGGTCATGCCCCAA	0.587000													5	113					0	0	0	0
MFI2	4241	broad.mit.edu	37	3	196753556	196753556	+	Silent	SNP	C	T	T	rs138189044		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:196753556C>T	uc003fxk.3	-	3	392	c.279G>A	c.(277-279)CCG>CCA	p.P93P	MFI2_uc003fxl.3_Silent_p.P93P|MFI2_uc011bua.1_Silent_p.P93P	NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	93	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CGCCCACCACCGGCTTCAGGC	0.617000													9	124					0	0	0	0
LOC220729	220729	broad.mit.edu	37	3	197351027	197351027	+	RNA	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr3:197351027G>A	uc011bug.1	-	2		c.144C>T			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_RNA					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						CTTCAACAGTGAAGTGAACAC	0.453000													14	44					0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:996204A>C	uc003gby.2	+	8	1208	c.1120A>C	c.(1120-1122)ACC>CCC	p.T374P	IDUA_uc003gbz.2_RNA|IDUA_uc003gca.2_Missense_Mutation_p.T396P	NM_000203	NP_000194	P35475	IDUA_HUMAN	alpha-L-iduronidase precursor	374					disaccharide metabolic process	lysosome	cation binding|L-iduronidase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)		Laronidase(DB00090)	GGTCAACAACACCCGCCCGCC	0.711000													4	5					0	0	0	0
C4orf23	152992	broad.mit.edu	37	4	8472843	8472843	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:8472843C>T	uc003glg.1	+	10	1461	c.1273C>T	c.(1273-1275)CTG>TTG	p.L425L	C4orf23_uc003glh.1_Silent_p.L262L|C4orf23_uc003gli.1_5'Flank	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	654					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						AGCCAACGAGCTGGACACGGA	0.557000													24	212					0	0	0	0
BOD1L	259282	broad.mit.edu	37	4	13603427	13603427	+	Silent	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:13603427T>C	uc003gmz.1	-	10	5214	c.5097A>G	c.(5095-5097)GCA>GCG	p.A1699A	BOD1L_uc010idr.1_Silent_p.A1036A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1699							DNA binding			ovary(5)|breast(1)	6						TTATAGATCCTGCTCTTATCT	0.418000													38	388					0	0	0	0
RFC1	5981	broad.mit.edu	37	4	39308288	39308288	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:39308288C>A	uc003gty.1	-	14	2056	c.1922G>T	c.(1921-1923)GGC>GTC	p.G641V	RFC1_uc003gtx.1_Missense_Mutation_p.G640V	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	641				G -> N (in Ref. 2, 3 and 4).	DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						AAAACTAGAGCCATCATCTTT	0.473000													5	47					3.59834e-05	0.00020926	1	0
UGT2B4	7363	broad.mit.edu	37	4	70346487	70346487	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:70346487G>A	uc003hek.3	-	6	1499	c.1452C>T	c.(1450-1452)ACC>ACT	p.T484T	UGT2B4_uc011cap.1_Silent_p.T348T|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	484					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ACTGGAACCAGGTGAGGTCGT	0.498000													35	169					0	0	0	0
C4orf17	84103	broad.mit.edu	37	4	100451030	100451030	+	Missense_Mutation	SNP	C	T	T	rs145411536	byFrequency	TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:100451030C>T	uc003huw.2	+	5	784	c.461C>T	c.(460-462)TCC>TTC	p.S154F	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	154											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		ACTCCTGGCTCCTGTTCTTCA	0.378000													15	41					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114257135	114257135	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:114257135G>A	uc003ibe.3	+	30	3613	c.3513G>A	c.(3511-3513)CTG>CTA	p.L1171L	ANK2_uc003ibd.3_Silent_p.L1162L|ANK2_uc003ibf.3_Silent_p.L1171L|ANK2_uc011cgc.1_Silent_p.L347L|ANK2_uc003ibg.3_Silent_p.L166L|ANK2_uc003ibc.2_Silent_p.L1147L|ANK2_uc011cgb.1_Silent_p.L1186L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1138					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAGGTGTACTGAGCAGCACAG	0.567000													11	90					0	0	0	0
PCDH18	54510	broad.mit.edu	37	4	138451748	138451748	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:138451748G>T	uc003ihe.3	-	1	1882	c.1495C>A	c.(1495-1497)CAA>AAA	p.Q499K	PCDH18_uc003ihf.3_Missense_Mutation_p.Q492K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.Q279K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	499	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TATGTCACTTGCCCATTTTCT	0.408000													17	135					1.02788e-11	6.23753e-11	1	0
TRIO	7204	broad.mit.edu	37	5	14485179	14485179	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:14485179T>G	uc003jff.2	+	47	6665	c.6659T>G	c.(6658-6660)GTG>GGG	p.V2220G	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.V1869G	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2220	PH 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TTTTTTAAGGTGAGTTGCCTT	0.239000													9	59					0	0	0	0
CDH10	1008	broad.mit.edu	37	5	24505329	24505329	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:24505329C>T	uc003jgr.1	-	8	1617	c.1285G>A	c.(1285-1287)GAC>AAC	p.D429N	CDH10_uc011cnu.1_Intron	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	429	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AAGATTCTGTCAAGGTCAGTA	0.368000										HNSCC(23;0.051)			4	44					0	0	0	0
AMACR	23600	broad.mit.edu	37	5	33998863	33998863	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:33998863G>C	uc003jig.2	-	4	704	c.622C>G	c.(622-624)CGA>GGA	p.R208G	AMACR_uc003jih.2_Missense_Mutation_p.S154W|AMACR_uc003jii.2_Missense_Mutation_p.R193G|AMACR_uc003jij.2_Missense_Mutation_p.R208G|AMACR_uc003jil.1_Missense_Mutation_p.R208G|AMACR_uc003jik.1_Missense_Mutation_p.S154W	NM_014324	NP_055139	Q9UHK6	AMACR_HUMAN	alpha-methylacyl-CoA racemase isoform 1	208					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	mitochondrion|peroxisomal matrix	alpha-methylacyl-CoA racemase activity				0						TTCTGTCCTCGAGGTGCTTCC	0.433000													6	120					0	0	0	0
MRPS30	10884	broad.mit.edu	37	5	44809264	44809264	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:44809264A>T	uc003joh.2	+	1	238	c.200A>T	c.(199-201)CAG>CTG	p.Q67L	MRPS30_uc003joi.1_5'Flank	NM_016640	NP_057724	Q9NP92	RT30_HUMAN	mitochondrial ribosomal protein S30	67					apoptosis|translation	mitochondrion|ribosome	structural constituent of ribosome				0	Lung NSC(6;8.08e-07)					GAGCGCTGGCAGGCGACGGTG	0.637000													12	34					0	0	0	0
ACTBL2	345651	broad.mit.edu	37	5	56777772	56777772	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:56777772G>A	uc003jrm.2	-	1	865	c.763C>T	c.(763-765)CGC>TGC	p.R255C		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	255						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		CATCGGAAGCGTTCATTCCCA	0.532000													9	51					0	0	0	0
HTR1A	3350	broad.mit.edu	37	5	63256301	63256301	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:63256301T>C	uc011cqt.1	-	1	1246	c.1246A>G	c.(1246-1248)AAG>GAG	p.K416E		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	416	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	AACTTACACTTAATGATCTTC	0.498000													31	247					0	0	0	0
LYSMD3	116068	broad.mit.edu	37	5	89821073	89821073	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:89821073G>A	uc003kjr.2	-	2	182	c.34C>T	c.(34-36)CTT>TTT	p.L12F	LYSMD3_uc010jaz.1_Missense_Mutation_p.L12F|LYSMD3_uc003kjs.1_Missense_Mutation_p.L12F	NM_198273	NP_938014	Q7Z3D4	LYSM3_HUMAN	LysM, putative peptidoglycan-binding, domain	12	Extracellular (Potential).				cell wall macromolecule catabolic process	integral to membrane					0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-31)|Epithelial(54;5.22e-26)|all cancers(79;2.42e-22)		ACTCCTGGAAGAGGAAAACTA	0.403000													4	48					0	0	0	0
GIN1	54826	broad.mit.edu	37	5	102442428	102442428	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:102442428T>G	uc003koa.1	-	3	407	c.325A>C	c.(325-327)AAA>CAA	p.K109Q	GIN1_uc003kob.1_Intron|GIN1_uc003koc.1_Missense_Mutation_p.K109Q	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	109					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		ACCCACTGTTTGACATCATTG	0.353000													4	27					0	0	0	0
PJA2	9867	broad.mit.edu	37	5	108714181	108714181	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:108714181T>C	uc003kos.3	-	4	1227	c.1007A>G	c.(1006-1008)CAT>CGT	p.H336R		NM_014819	NP_055634	O43164	PJA2_HUMAN	praja 2, RING-H2 motif containing	336					long-term memory|regulation of protein kinase A signaling cascade	cell junction|endoplasmic reticulum membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	ligase activity|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(142;4.4e-06)|all_epithelial(76;8.17e-08)|Prostate(80;0.00676)|Lung NSC(167;0.0436)|Ovarian(225;0.0443)|all_lung(232;0.053)|Colorectal(57;0.0946)|Breast(839;0.151)		OV - Ovarian serous cystadenocarcinoma(64;3.46e-10)|Epithelial(69;6.02e-09)|COAD - Colon adenocarcinoma(37;0.224)		TTTCGCCTCATGCCTATTAAA	0.408000													49	208					0	0	0	0
KCNN2	3781	broad.mit.edu	37	5	113740539	113740539	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:113740539C>T	uc003kqo.2	+	3	1444	c.987C>T	c.(985-987)GTC>GTT	p.V329V		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	329						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CATGGACTGTCCGAGCTTGTG	0.348000													26	174					0	0	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263296	140263296	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:140263296C>T	uc003lif.2	+	1	1443	c.1443C>T	c.(1441-1443)GAC>GAT	p.D481D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.D481D|PCDHA13_uc003lid.2_Silent_p.D481D	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	481	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTCAGGACGCGGACGCAC	0.662000													34	137					0	0	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263844	140263844	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:140263844C>T	uc003lif.2	+	1	1991	c.1991C>T	c.(1990-1992)ACG>ATG	p.T664M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.T664M|PCDHA13_uc003lid.2_Missense_Mutation_p.T664M	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	664	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACGGCAACGGTGCTGTTG	0.687000													26	111					0	0	0	0
RBM27	54439	broad.mit.edu	37	5	145609363	145609363	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:145609363A>G	uc003lnz.3	+	5	645	c.479A>G	c.(478-480)TAT>TGT	p.Y160C	RBM27_uc003lny.2_Missense_Mutation_p.Y160C	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	160	Arg-rich.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGTGAGAAGTATGACTGGAGA	0.413000													71	104					0	0	0	0
EBF1	1879	broad.mit.edu	37	5	158140094	158140094	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:158140094T>A	uc010jip.2	-	13	1555	c.1253A>T	c.(1252-1254)CAC>CTC	p.H418L	EBF1_uc011ddw.1_Missense_Mutation_p.H286L|EBF1_uc011ddx.1_Missense_Mutation_p.H419L|EBF1_uc003lxl.3_Missense_Mutation_p.H387L	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	418					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGTTGGTTGTGGTTGCGGGG	0.562000			T	HMGA2	lipoma								24	45					0	0	0	0
GABRA1	2554	broad.mit.edu	37	5	161324318	161324318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr5:161324318C>T	uc010jiw.2	+	11	1729	c.1261C>T	c.(1261-1263)CGA>TGA	p.R421*	GABRA1_uc010jix.2_Nonsense_Mutation_p.R421*|GABRA1_uc010jiy.2_Nonsense_Mutation_p.R421*|GABRA1_uc003lyx.3_Nonsense_Mutation_p.R421*|GABRA1_uc010jiz.2_Nonsense_Mutation_p.R421*|GABRA1_uc010jja.2_Nonsense_Mutation_p.R421*|GABRA1_uc010jjb.2_Nonsense_Mutation_p.R421*	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	421	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CAAAATTGACCGACTGTCAAG	0.443000													48	172					0	0	0	0
HIST1H4E	8367	broad.mit.edu	37	6	26205156	26205156	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:26205156G>A	uc003ngy.2	+	1	284	c.284G>A	c.(283-285)GGA>GAA	p.G95E		NM_003545	NP_003536	P62805	H4_HUMAN	histone cluster 1, H4e	95					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1		all_hematologic(11;0.196)				AAGAGACAGGGACGCACTCTT	0.527000													16	60					0	0	0	0
HLA-A	3105	broad.mit.edu	37	6	29911172	29911172	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:29911172G>A	uc003nol.2	+	3	471	c.471G>A	c.(469-471)TGG>TGA	p.W157*	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_RNA|HLA-A_uc010jrq.2_Nonsense_Mutation_p.W36*|HLA-A_uc003nok.2_Nonsense_Mutation_p.W36*|HLA-A_uc003non.2_Nonsense_Mutation_p.W157*|HLA-A_uc003noo.2_Nonsense_Mutation_p.W157*|HLA-A_uc010jrr.2_Nonsense_Mutation_p.W157*|HLA-A_uc003nom.2_Nonsense_Mutation_p.W36*|HLA-A_uc010klp.2_Nonsense_Mutation_p.W129*|HLA-A_uc011dmc.1_Nonsense_Mutation_p.W36*|HLA-A_uc011dmd.1_Nonsense_Mutation_p.W36*	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	157	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGCGCTCTTGGACCGCGGCGG	0.672000									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			9	32					0	0	0	0
IP6K3	117283	broad.mit.edu	37	6	33703227	33703227	+	Silent	SNP	G	A	A	rs150212654		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:33703227G>A	uc010jvf.2	-	3	563	c.27C>T	c.(25-27)GCC>GCT	p.A9A	IP6K3_uc003ofb.2_Silent_p.A9A	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	9					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						TCATGTCCCCGGCGTCTGCGC	0.617000													6	42					0	0	0	0
DOPEY1	23033	broad.mit.edu	37	6	83835435	83835435	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:83835435G>A	uc003pjs.1	+	15	1962	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K	DOPEY1_uc011dyy.1_Missense_Mutation_p.E559K|DOPEY1_uc010kbl.1_Missense_Mutation_p.E559K	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	568					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TTCAGTCAAAGAGTGGGAAGA	0.368000													9	58					0	0	0	0
C6orf186	728464	broad.mit.edu	37	6	110636640	110636640	+	Silent	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:110636640A>G	uc010kdu.1	-	3	462	c.462T>C	c.(460-462)TCT>TCC	p.S154S	C6orf186_uc003pub.2_Intron	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	154						extracellular region					0						GTGTAGGACTAGAGTCAGTAG	0.433000													13	85					0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111697876	111697876	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:111697876T>C	uc003puy.3	-	13	2005	c.1682A>G	c.(1681-1683)CAC>CGC	p.H561R	REV3L_uc003pux.3_Missense_Mutation_p.H483R|REV3L_uc003puz.3_Missense_Mutation_p.H483R	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	561					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		AGCATCTTTGTGAAAGATGGA	0.393000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					8	110					0	0	0	0
KATNA1	11104	broad.mit.edu	37	6	149944272	149944272	+	Silent	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:149944272T>C	uc003qmr.1	-	3	513	c.468A>G	c.(466-468)GAA>GAG	p.E156E	KATNA1_uc003qms.2_Silent_p.E156E|KATNA1_uc003qmt.2_Silent_p.E156E|KATNA1_uc011eed.1_Silent_p.E156E	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	156	Interaction with microtubule.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		GTTCTTTCTTTTCACGACAAC	0.343000													8	55					0	0	0	0
MAP3K4	4216	broad.mit.edu	37	6	161530868	161530868	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:161530868A>G	uc003qtn.2	+	23	4460	c.4318A>G	c.(4318-4320)ATT>GTT	p.I1440V	MAP3K4_uc010kkc.1_Missense_Mutation_p.I1436V|MAP3K4_uc003qto.2_Missense_Mutation_p.I1390V|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.I893V|MAP3K4_uc003qtp.2_Missense_Mutation_p.I376V|MAP3K4_uc003qtq.2_Missense_Mutation_p.I129V	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1440	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GGAACATGTGATTAGGCTGTA	0.488000													25	88					0	0	0	0
C6orf70	55780	broad.mit.edu	37	6	170176742	170176742	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:170176742G>T	uc003qxg.1	+	16	1745	c.1712G>T	c.(1711-1713)CGG>CTG	p.R571L	C6orf70_uc011ehb.1_Missense_Mutation_p.R445L|C6orf70_uc003qxh.1_Intron|C6orf70_uc010kky.1_Intron|C6orf70_uc003qxi.1_Missense_Mutation_p.R219L	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	571						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		TCTCGCCAGCGGCAGAACTAC	0.597000													11	47					2.80697e-09	1.69285e-08	1	0
NOD1	10392	broad.mit.edu	37	7	30486644	30486644	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:30486644C>T	uc003tav.2	-	8	2831	c.2308G>A	c.(2308-2310)GAT>AAT	p.D770N		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	770	LRR 4.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						GCTCCGACATCGGTGATCTGG	0.448000													30	147					0	0	0	0
ABCA13	154664	broad.mit.edu	37	7	48314127	48314127	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:48314127C>T	uc003toq.2	+	17	4889	c.4864C>T	c.(4864-4866)CCT>TCT	p.P1622S	ABCA13_uc010kyr.2_Missense_Mutation_p.P1125S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1622					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AATAATTTCACCTGAAATAAT	0.378000													26	218					0	0	0	0
EGFR	1956	broad.mit.edu	37	7	55242489	55242489	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:55242489G>A	uc003tqk.2	+	19	2505	c.2259G>A	c.(2257-2259)CCG>CCA	p.P753P	EGFR_uc010kzg.1_Silent_p.P708P|EGFR_uc011kco.1_Silent_p.P700P	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	753	Cytoplasmic (Potential).|Protein kinase.		Missing (found in a lung cancer sample).		activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.L747_P753>S(166)|p.L747_P753del(21)|p.L747_P753>Q(19)|p.S752_I759del(15)|p.T751_I759>N(8)|p.E746_P753>VS(6)|p.P753S(4)|p.T751_I759>S(3)|p.A750_E758>P(3)|p.A750_K757del(2)|p.A750_E758del(2)|p.E746_P753del(2)|p.T751_I759>NKA(2)|p.E749_E758>QP(2)|p.T751_E758del(2)|p.L747_K754>ST(1)|p.T751_E758>A(1)|p.E746_P753>VQ(1)|p.T751_I759>REA(1)|p.L747_A755del(1)|p.P753_I759del(1)|p.P753F(1)|p.L747_A755>SKS(1)|p.L747_K754>N(1)|p.A750_K754del(1)|p.L747_K754del(1)|p.L747_K754>GC(1)|p.L747_N756>SKDD(1)|p.E749_P753>Q(1)|p.L747_P753>CG(1)|p.S752_V769del(1)|p.P753P(1)|p.R748_P753del(1)|p.E746_P753>LS(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CAACATCTCCGAAAGCCAACA	0.493000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			7	70					0	0	0	0
CALN1	83698	broad.mit.edu	37	7	71252883	71252883	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:71252883A>C	uc003twa.3	-	6	1064	c.537T>G	c.(535-537)CAT>CAG	p.H179Q	CALN1_uc003twb.3_Missense_Mutation_p.H221Q|CALN1_uc003twc.3_Missense_Mutation_p.H179Q	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	179	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				GCTTCTGGGAATGCACTGGTG	0.512000													20	42					0	0	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94750101	94750101	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:94750101G>A	uc003unp.2	+	4	1888	c.1606G>A	c.(1606-1608)GTC>ATC	p.V536I	PPP1R9A_uc010lfj.2_Missense_Mutation_p.V536I|PPP1R9A_uc011kif.1_Missense_Mutation_p.V536I|PPP1R9A_uc003unq.2_Missense_Mutation_p.V536I|PPP1R9A_uc011kig.1_Missense_Mutation_p.V536I	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	536	PDZ.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GGGAATATTCGTCAAGACAGT	0.393000										HNSCC(28;0.073)			35	98					0	0	0	0
SLC12A9	56996	broad.mit.edu	37	7	100463759	100463759	+	Silent	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:100463759C>A	uc003uwp.2	+	14	2419	c.2277C>A	c.(2275-2277)CCC>CCA	p.P759P	SLC12A9_uc011kki.1_Silent_p.P290P|SLC12A9_uc003uwr.2_Silent_p.P495P|SLC12A9_uc003uws.2_Silent_p.P290P|SLC12A9_uc003uwt.2_Silent_p.P495P|SLC12A9_uc003uwv.2_Silent_p.P290P|TRIP6_uc010lhk.1_5'Flank|TRIP6_uc003uww.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	759	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GCATGGTGCCCGCTTGGCATA	0.706000													5	120					0.00116845	0.0064862	1	0
RELN	5649	broad.mit.edu	37	7	103183184	103183184	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:103183184T>C	uc003vca.2	-	43	6825	c.6665A>G	c.(6664-6666)CAT>CGT	p.H2222R	RELN_uc010liz.2_Missense_Mutation_p.H2222R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2222					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTACCTAGCATGTGATAAATC	0.378000													8	58					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103270583	103270583	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:103270583C>A	uc003vca.2	-	20	2666	c.2506G>T	c.(2506-2508)GGA>TGA	p.G836*	RELN_uc010liz.2_Nonsense_Mutation_p.G836*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	836					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AACTGAATTCCAAACTGCTTT	0.343000													7	72					0.000157383	0.000899202	1	0
DNAJB9	4189	broad.mit.edu	37	7	108213733	108213733	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:108213733G>A	uc003vfn.2	+	3	810	c.608G>A	c.(607-609)TGC>TAC	p.C203Y		NM_012328	NP_036460	Q9UBS3	DNJB9_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 9	203					ER-associated protein catabolic process|protein folding	endoplasmic reticulum|nucleolus	heat shock protein binding|misfolded protein binding|unfolded protein binding				0						AGCAAGCACTGCAGGACTGTC	0.373000													18	60					0	0	0	0
TBXAS1	6916	broad.mit.edu	37	7	139575421	139575421	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:139575421A>G	uc011kqv.1	+	3	388	c.224A>G	c.(223-225)TAT>TGT	p.Y75C	TBXAS1_uc003vvh.2_Missense_Mutation_p.Y75C|TBXAS1_uc010lne.2_Missense_Mutation_p.Y7C|TBXAS1_uc011kqu.1_Intron|TBXAS1_uc003vvi.2_Missense_Mutation_p.Y75C|TBXAS1_uc003vvj.2_Missense_Mutation_p.Y75C|TBXAS1_uc011kqw.1_Silent_p.V45V|TBXAS1_uc011kqx.1_Missense_Mutation_p.Y75C	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	74	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					AGAAAGCTGTATGGACCTCTG	0.338000													3	52					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48794645	48794645	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:48794645A>G	uc003xqi.2	-	38	4847	c.4790T>C	c.(4789-4791)TTG>TCG	p.L1597S	PRKDC_uc003xqj.2_Missense_Mutation_p.L1597S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1597					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CATGCCGTTCAAAACGGCACT	0.393000								NHEJ					56	110					0	0	0	0
RNF19A	25897	broad.mit.edu	37	8	101273978	101273978	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:101273978T>C	uc003yjj.1	-	9	1791	c.1474A>G	c.(1474-1476)ACA>GCA	p.T492A	RNF19A_uc003yjk.1_Missense_Mutation_p.T492A	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	492					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			GCTACTGATGTTGTGTCTAAA	0.403000													110	72					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110476615	110476615	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:110476615A>G	uc003yne.2	+	49	7658	c.7554A>G	c.(7552-7554)ATA>ATG	p.I2518M		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2518	PbH1 1.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGAATATTATATATGATATTA	0.363000										HNSCC(38;0.096)			23	27					0	0	0	0
KCNQ3	3786	broad.mit.edu	37	8	133142023	133142023	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:133142023A>C	uc003ytj.2	-	15	2330	c.2105T>G	c.(2104-2106)GTG>GGG	p.V702G	KCNQ3_uc010mdt.2_Missense_Mutation_p.V690G	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	702					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GTCAATGGTCACCTGGTGGAA	0.532000													8	148					0	0	0	0
TG	7038	broad.mit.edu	37	8	134030138	134030138	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:134030138C>T	uc003ytw.2	+	38	6719	c.6678C>T	c.(6676-6678)GAC>GAT	p.D2226D	TG_uc010mdw.2_Silent_p.D985D|TG_uc011ljb.1_Silent_p.D595D|TG_uc011ljc.1_Silent_p.D359D	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2226					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGCAAGTGGACCAGTTCCTTG	0.617000													79	104					0	0	0	0
GPR20	2843	broad.mit.edu	37	8	142367504	142367504	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr8:142367504C>T	uc003ywf.2	-	2	609	c.520G>A	c.(520-522)GTG>ATG	p.V174M		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	174	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GCCAGCCACACGAAGGCGCAC	0.711000													8	8					0	0	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88207485	88207485	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr9:88207485G>A	uc011ltd.1	-	18	2591	c.2558C>T	c.(2557-2559)TCA>TTA	p.S853L	AGTPBP1_uc004aod.3_Missense_Mutation_p.S479L|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Missense_Mutation_p.S813L|AGTPBP1_uc011lte.1_Missense_Mutation_p.S865L	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	853					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						CTGTAAAGTTGAATACGTATA	0.274000													15	63					0	0	0	0
Unknown	0	broad.mit.edu	37	9	98775457	98775457	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr9:98775457A>G	uc010msa.1	+	4	2444	c.1568A>G	c.(1567-1569)AAC>AGC	p.N523S	uc011lun.1_Intron					RecName: Full=Uncharacterized protein C9orf102;																		ACAGATGAAAACGCAACCAAT	0.398000													31	75					0	0	0	0
ALG2	85365	broad.mit.edu	37	9	101980621	101980621	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr9:101980621C>T	uc004azf.2	-	2	916	c.846G>A	c.(844-846)CAG>CAA	p.Q282Q	ALG2_uc004azg.2_Silent_p.Q189Q	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	282					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				TCTTCAATTCCTGATAATGTT	0.483000													32	73					0	0	0	0
DENND1A	57706	broad.mit.edu	37	9	126414316	126414316	+	Silent	SNP	G	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr9:126414316G>A	uc004bnz.1	-	9	827	c.594C>T	c.(592-594)CTC>CTT	p.L198L	DENND1A_uc011lzl.1_Silent_p.L15L|DENND1A_uc004bny.1_Silent_p.L15L|DENND1A_uc011lzm.1_Silent_p.L166L|DENND1A_uc004boa.1_Silent_p.L198L|DENND1A_uc004bob.1_Silent_p.L168L|DENND1A_uc004boc.2_Silent_p.L166L	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	198	DENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						TGCAAATGATGAGTATCCGGC	0.388000													9	35					0	0	0	0
FUBP3	8939	broad.mit.edu	37	9	133506175	133506175	+	Silent	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr9:133506175C>T	uc004bzr.1	+	13	1386	c.1278C>T	c.(1276-1278)GGC>GGT	p.G426G	FUBP3_uc004bzs.1_Silent_p.G339G	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	426					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		AGAAAGTTGGCGTACGTACAG	0.567000													6	19					0	0	0	0
CRLF2	64109	broad.mit.edu	37	X	1325403	1325403	+	RNA	SNP	C	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrX:1325403C>A	uc004cpm.1	-	3		c.272G>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AATGTCGTCTCGCTGCTCTGC	0.507000			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								5	143					0.00116845	0.0064862	1	0
ARSF	416	broad.mit.edu	37	X	3030221	3030221	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrX:3030221C>T	uc004cre.1	+	11	1618	c.1397C>T	c.(1396-1398)TCA>TTA	p.S466L	ARSF_uc004crf.1_Missense_Mutation_p.S466L	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	466						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ccAGGTGGGTCAGTTTGGAAG	0.284000													25	28					0	0	0	0
TLR8	51311	broad.mit.edu	37	X	12937993	12937993	+	Silent	SNP	A	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrX:12937993A>T	uc004cve.2	+	2	902	c.834A>T	c.(832-834)ATA>ATT	p.I278I	TLR8_uc004cvd.2_Silent_p.I296I	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	278	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						CAATTAATATAGATCGTTTTG	0.408000													12	47					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37026544	37026544	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrX:37026544T>C	uc004ddl.1	+	1	75	c.61T>C	c.(61-63)TAC>CAC	p.Y21H		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	21										ovary(3)	3						CACGCCCTGGTACTGTGACAA	0.657000													12	13					0	0	0	0
ARHGEF9	23229	broad.mit.edu	37	X	62917122	62917122	+	Silent	SNP	G	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrX:62917122G>T	uc004dvl.2	-	4	1283	c.444C>A	c.(442-444)ATC>ATA	p.I148I	ARHGEF9_uc004dvj.1_Silent_p.I37I|ARHGEF9_uc004dvk.1_Silent_p.I10I|ARHGEF9_uc011mos.1_Silent_p.I127I|ARHGEF9_uc004dvm.1_Silent_p.I127I|ARHGEF9_uc011mot.1_Silent_p.I95I|ARHGEF9_uc004dvn.2_Silent_p.I155I	NM_015185	NP_056000	O43307	ARHG9_HUMAN	Cdc42 guanine exchange factor 9	148	DH.				apoptosis|induction of apoptosis by extracellular signals|ion transmembrane transport|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(5)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	8						TGTTCCCAAAGATTACCTTCA	0.468000													9	18					3.86212e-05	0.000223272	1	0
ZMYND12	84217	broad.mit.edu	37	1	42905661	42905664	+	Frame_Shift_Del	DEL	ATAG	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:42905661_42905664delATAG	uc001chj.2	-	4	727_730	c.457_460delCTAT	c.(457-462)CTATTCfs	p.L153fs	ZMYND12_uc010ojt.1_Frame_Shift_Del_p.L43fs	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	153_154						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGGCTTGGAATAGATATTCTTCA	0.426													---	---	---							
TNN	63923	broad.mit.edu	37	1	175053061	175053072	+	Splice_Site	DEL	TGACATCACTGG	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr1:175053061_175053072delTGACATCACTGG	uc001gkl.1	+	5	1347	c.1234_splice	c.e5+1	p.G412_splice	TNN_uc010pmx.1_Splice_Site_p.G412_splice	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor						cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGAGCCGATATGACATCACTGGTAAGAGCCAT	0.542													---	---	---							
Unknown	0	broad.mit.edu	37	13	25562703	25562704	+	IGR	INS	-	T	T	rs2497592	by1000genomes	TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr13:25562703_25562704insT								TPTE2P1 (20096 upstream) : PABPC3 (107572 downstream)																							AAAAAGTTTCGTTTTTTTAATT	0.233													---	---	---							
TP53	7157	broad.mit.edu	37	17	7578232	7578232	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr17:7578232delA	uc002gim.2	-	6	811	c.617delT	c.(616-618)TTGfs	p.L206fs	TP53_uc002gig.1_Frame_Shift_Del_p.L206fs|TP53_uc002gih.2_Frame_Shift_Del_p.L206fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.L74fs|TP53_uc010cng.1_Frame_Shift_Del_p.L74fs|TP53_uc002gii.1_Frame_Shift_Del_p.L74fs|TP53_uc010cnh.1_Frame_Shift_Del_p.L206fs|TP53_uc010cni.1_Frame_Shift_Del_p.L206fs|TP53_uc002gij.2_Frame_Shift_Del_p.L206fs|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Frame_Shift_Del_p.L113fs|TP53_uc002gio.2_Frame_Shift_Del_p.L74fs|TP53_uc010vug.1_Frame_Shift_Del_p.L167fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	206	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		L -> F (in a sporadic cancer; somatic mutation).|L -> M (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.L206*(5)|p.L206fs*41(4)|p.K164_P219del(1)|p.L206F(1)|p.?fs(1)|p.L206L(1)|p.E204fs*39(1)|p.E204_N210delEYLDDRN(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TCTGTCATCCAAATACTCCAC	0.547		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			---	---	---							
OSBPL1A	114876	broad.mit.edu	37	18	21745096	21745097	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr18:21745096_21745097insT	uc002kve.2	-	27	2856_2857	c.2682_2683insA	c.(2680-2685)AAACGAfs	p.K894fs	OSBPL1A_uc002kvd.2_Frame_Shift_Ins_p.K381fs|OSBPL1A_uc010xbc.1_Frame_Shift_Ins_p.K512fs	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	894_895	Potential.				cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TCCTCAAGTCGTTTTTTTTCTT	0.460													---	---	---							
CCDC108	255101	broad.mit.edu	37	2	219895483	219895485	+	In_Frame_Del	DEL	CTT	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr2:219895483_219895485delCTT	uc002vjl.1	-	9	1171_1173	c.1087_1089delAAG	c.(1087-1089)AAGdel	p.K363del	CCDC108_uc010fwa.1_5'Flank|CCDC108_uc010zkp.1_In_Frame_Del_p.K352del|CCDC108_uc010zkq.1_In_Frame_Del_p.K298del	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	363						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGTACAACAGCTTCTGGAAGCCC	0.640													---	---	---							
Unknown	0	broad.mit.edu	37	20	41859347	41859347	+	IGR	DEL	A	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr20:41859347delA								PTPRT (40790 upstream) : SFRS6 (227157 downstream)																							taaaaataataaaaaaaaaGC	0.239													---	---	---							
Unknown	0	broad.mit.edu	37	21	9865569	9865570	+	IGR	INS	-	A	A	rs77497487	by1000genomes	TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr21:9865569_9865570insA								None (None upstream) : None (None downstream)																							CTGCTGAGTTTAAATCTTCCTT	0.490													---	---	---							
SLC25A17	10478	broad.mit.edu	37	22	41215416	41215416	+	5'Flank	DEL	C	-	-	rs111880788		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr22:41215416delC	uc003azc.2	-						SLC25A17_uc010gyg.2_5'Flank|SLC25A17_uc011aou.1_5'Flank|SLC25A17_uc003azd.2_5'Flank|SLC25A17_uc011aov.1_5'Flank	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;						fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						GGCGGGAAAGCGGGGGGGGGG	0.716											OREG0026586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
Unknown	0	broad.mit.edu	37	4	4147283	4147283	+	IGR	DEL	G	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:4147283delG								LOC348926 (190135 upstream) : OTOP1 (43247 downstream)																							CACTGGGCATGGGGCCCCCAA	0.617													---	---	---							
Unknown	0	broad.mit.edu	37	4	69749804	69749805	+	IGR	INS	-	T	T			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr4:69749804_69749805insT								UGT2B10 (52065 upstream) : UGT2A3 (44372 downstream)																							CACTGCACCTATTAATAATGTC	0.386													---	---	---							
FTSJD2	23070	broad.mit.edu	37	6	37426517	37426527	+	Frame_Shift_Del	DEL	AAGGGCCCTAA	-	-			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr6:37426517_37426527delAAGGGCCCTAA	uc003ons.2	+	9	1160_1170	c.907_917delAAGGGCCCTAA	c.(907-918)AAGGGCCCTAATfs	p.K303fs	FTSJD2_uc010jwu.2_Frame_Shift_Del_p.K247fs	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	303_306					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AATGACTTTGAAGGGCCCTAATGACTTCAAG	0.512													---	---	---							
TMEM168	64418	broad.mit.edu	37	7	112423785	112423786	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chr7:112423785_112423786insA	uc003vgn.2	-	2	1487_1488	c.1095_1096insT	c.(1093-1098)CTTGCAfs	p.L365fs	TMEM168_uc010lju.2_Frame_Shift_Ins_p.L365fs|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	365_366	Helical; (Potential).					integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						ATCGCTGTTGCAAGAAGACTAA	0.411													---	---	---							
Unknown	0	broad.mit.edu	37	Y	28582961	28582962	+	IGR	INS	-	AT	AT	rs4008413		TCGA-CV-6937-01A-11D-2012-08	TCGA-CV-6937-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c78a20e-150f-4c12-8abe-b941f90e730f	9d1e96e0-810f-4f72-a622-c95907643627	g.chrY:28582961_28582962insAT								None (None upstream) : None (None downstream)																							AAGTATAAAACAAAAACCTAAA	0.322													---	---	---							
