Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PRDM16	63976	broad.mit.edu	36	1	3318574	3318574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3318574	3318574	PRDM16	1	C	C	T	27
HEYL	26508	broad.mit.edu	36	1	39877855	39877855	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	39877855	39877855	HEYL	1	G	G	A	39
COL11A1	1301	broad.mit.edu	36	1	103152498	103152498	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	103152498	103152498	COL11A1	1	C	C	T	25
COL11A1	1301	broad.mit.edu	36	1	103263665	103263665	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	103263665	103263665	COL11A1	1	C	C	T	24
C1orf88	128344	broad.mit.edu	36	1	111692773	111692773	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111692773	111692773	C1orf88	1	A	A	C	3
WNT2B	7482	broad.mit.edu	36	1	112861398	112861398	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112861398	112861398	WNT2B	1	G	G	T	42
TAF3	83860	broad.mit.edu	36	10	8047174	8047174	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	8047174	8047174	TAF3	10	C	C	T	17
SEPHS1	22929	broad.mit.edu	36	10	13401294	13401294	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13401294	13401294	SEPHS1	10	A	A	T	16
C10orf140	387640	broad.mit.edu	36	10	21845211	21845211	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21845211	21845211	C10orf140	10	G	G	C	37
ZRANB1	54764	broad.mit.edu	36	10	126663340	126663340	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	126663340	126663340	ZRANB1	10	A	A	G	4
MOB2	81532	broad.mit.edu	36	11	1448161	1448161	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1448161	1448161	MOB2	11	C	C	T	27
ART1	417	broad.mit.edu	36	11	3637449	3637449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3637449	3637449	ART1	11	G	G	A	42
OR51E2	81285	broad.mit.edu	36	11	4659803	4659803	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4659803	4659803	OR51E2	11	T	T	C	60
TRIM5	85363	broad.mit.edu	36	11	5657570	5657570	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	5657570	5657570	TRIM5	11	G	G	T	44
ADM	133	broad.mit.edu	36	11	10284120	10284120	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10284120	10284120	ADM	11	C	C	A	21
TMEM86A	144110	broad.mit.edu	36	11	18679776	18679776	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18679776	18679776	TMEM86A	11	G	G	T	44
OR5R1	219479	broad.mit.edu	36	11	55941589	55941589	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55941589	55941589	OR5R1	11	C	C	A	24
TBC1D10C	374403	broad.mit.edu	36	11	66929688	66929688	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66929688	66929688	TBC1D10C	11	G	G	C	42
TECTA	7007	broad.mit.edu	36	11	120528838	120528838	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120528838	120528838	TECTA	11	G	G	A	40
VWA5A	4013	broad.mit.edu	36	11	123494936	123494936	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123494936	123494936	VWA5A	11	C	C	G	30
CHD4	1108	broad.mit.edu	36	12	6562294	6562294	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6562294	6562294	CHD4	12	C	C	A	19
SLCO1B3	28234	broad.mit.edu	36	12	20923791	20923791	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	20923791	20923791	SLCO1B3	12	C	C	T	27
SPRYD4	283377	broad.mit.edu	36	12	55149488	55149488	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55149488	55149488	SPRYD4	12	C	C	A	28
NACA	4666	broad.mit.edu	36	12	55401441	55401441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55401441	55401441	NACA	12	G	G	T	35
STARD13	90627	broad.mit.edu	36	13	32601981	32601981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32601981	32601981	STARD13	13	G	G	A	33
FREM2	341640	broad.mit.edu	36	13	38160931	38160931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38160931	38160931	FREM2	13	G	G	A	44
DLEU7	220107	broad.mit.edu	36	13	50315471	50315473	+	Missense_Mutation	TNP	GGG	GGG	TAT	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	TNP	50315471	50315473	DLEU7	13	GGG	GGG	TAT	39
SNX6	58533	broad.mit.edu	36	14	34120520	34120520	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	34120520	34120520	SNX6	14	T	T	G	56
ZBTB25	7597	broad.mit.edu	36	14	64024495	64024495	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64024495	64024495	ZBTB25	14	T	T	G	60
DYNC1H1	1778	broad.mit.edu	36	14	101531342	101531342	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	101531342	101531342	DYNC1H1	14	T	T	C	51
CATSPER2	117155	broad.mit.edu	36	15	41727460	41727460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41727460	41727460	CATSPER2	15	T	T	A	51
IGDCC3	9543	broad.mit.edu	36	15	63411349	63411349	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	63411349	63411349	IGDCC3	15	C	C	T	26
DPP8	54878	broad.mit.edu	36	15	63586648	63586648	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	63586648	63586648	DPP8	15	A	A	G	1
SYNM	23336	broad.mit.edu	36	15	97489440	97489440	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	97489440	97489440	SYNM	15	G	G	C	41
ELMO3	79767	broad.mit.edu	36	16	65793434	65793434	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	65793434	65793434	ELMO3	16	G	G	T	47
FUK	197258	broad.mit.edu	36	16	69070777	69070777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69070777	69070777	FUK	16	G	G	C	35
ZCCHC14	23174	broad.mit.edu	36	16	86011726	86011726	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86011726	86011726	ZCCHC14	16	T	T	C	58
TP53	7157	broad.mit.edu	36	17	7518902	7518902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7518902	7518902	TP53	17	C	C	T	24
ODF4	146852	broad.mit.edu	36	17	8184294	8184294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8184294	8184294	ODF4	17	C	C	T	22
CARD14	79092	broad.mit.edu	36	17	75786558	75786558	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	75786558	75786558	CARD14	17	T	T	G	57
NARF	26502	broad.mit.edu	36	17	78032319	78032319	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	78032319	78032319	NARF	17	G	G	T	41
CCDC94	55702	broad.mit.edu	36	19	4202129	4202129	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4202129	4202129	CCDC94	19	C	C	T	17
PSG4	5672	broad.mit.edu	36	19	48393988	48393988	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	48393988	48393988	PSG4	19	C	C	G	19
RTN2	6253	broad.mit.edu	36	19	50689411	50689411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50689411	50689411	RTN2	19	G	G	C	39
ZNF649	65251	broad.mit.edu	36	19	57085739	57085739	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57085739	57085739	ZNF649	19	C	C	G	18
MYO7B	4648	broad.mit.edu	36	2	128097353	128097353	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128097353	128097353	MYO7B	2	A	A	T	6
ARHGEF4	50649	broad.mit.edu	36	2	131519516	131519516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131519516	131519516	ARHGEF4	2	C	C	T	31
MYO3B	140469	broad.mit.edu	36	2	170952036	170952036	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	170952036	170952036	MYO3B	2	G	G	T	41
GPR155	151556	broad.mit.edu	36	2	175039537	175039537	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	175039537	175039537	GPR155	2	G	G	C	36
TTN	7273	broad.mit.edu	36	2	179313133	179313133	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	179313133	179313133	TTN	2	C	C	A	29
CCDC141	285025	broad.mit.edu	36	2	179441034	179441034	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	179441034	179441034	CCDC141	2	G	G	T	35
WDR75	84128	broad.mit.edu	36	2	190047719	190047719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	190047719	190047719	WDR75	2	C	C	G	32
SLC40A1	30061	broad.mit.edu	36	2	190138503	190138503	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	190138503	190138503	SLC40A1	2	C	C	G	32
ABCA12	26154	broad.mit.edu	36	2	215515967	215515967	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	215515967	215515967	ABCA12	2	G	G	C	33
C2orf57	165100	broad.mit.edu	36	2	232166123	232166123	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	232166123	232166123	C2orf57	2	G	G	T	36
SAG	6295	broad.mit.edu	36	2	233901966	233901966	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	233901966	233901966	SAG	2	C	C	A	26
RBM44	375316	broad.mit.edu	36	2	238402700	238402700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	238402700	238402700	RBM44	2	T	T	C	60
TGM2	7052	broad.mit.edu	36	20	36217890	36217890	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36217890	36217890	TGM2	20	T	T	G	55
BAGE4	85317	broad.mit.edu	36	21	10120600	10120600	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10120600	10120600	BAGE4	21	G	G	A	39
ADAMTS1	9510	broad.mit.edu	36	21	27138592	27138592	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27138592	27138592	ADAMTS1	21	G	G	C	35
TXNRD2	10587	broad.mit.edu	36	22	18286508	18286508	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18286508	18286508	TXNRD2	22	G	G	A	38
ZNRF3	84133	broad.mit.edu	36	22	27776883	27776883	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27776883	27776883	ZNRF3	22	C	C	A	24
CSF2RB	1439	broad.mit.edu	36	22	35662613	35662613	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	35662613	35662613	CSF2RB	22	G	G	A	47
EIF3L	51386	broad.mit.edu	36	22	36596276	36596276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36596276	36596276	EIF3L	22	C	C	A	17
MOV10L1	54456	broad.mit.edu	36	22	48872654	48872654	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48872654	48872654	MOV10L1	22	G	G	T	45
RFTN1	23180	broad.mit.edu	36	3	16333610	16333610	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16333610	16333610	RFTN1	3	C	C	A	30
DHX30	22907	broad.mit.edu	36	3	47857576	47857577	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	47857576	47857577	DHX30	3	AG	AG	CA	11
HYAL3	8372	broad.mit.edu	36	3	50307756	50307756	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50307756	50307756	HYAL3	3	G	G	T	46
DCBLD2	131566	broad.mit.edu	36	3	100014013	100014013	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100014013	100014013	DCBLD2	3	A	A	G	4
NIT2	56954	broad.mit.edu	36	3	101554014	101554014	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101554014	101554014	NIT2	3	C	C	T	17
NFKBIZ	64332	broad.mit.edu	36	3	103057327	103057327	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	103057327	103057327	NFKBIZ	3	G	G	A	33
ARHGAP31	57514	broad.mit.edu	36	3	120616387	120616387	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120616387	120616387	ARHGAP31	3	G	G	A	34
LOC389151	389151	broad.mit.edu	36	3	140221999	140221999	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140221999	140221999	LOC389151	3	C	C	G	23
MAN2B2	23324	broad.mit.edu	36	4	6649768	6649768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6649768	6649768	MAN2B2	4	A	A	G	14
SPCS3	60559	broad.mit.edu	36	4	177478319	177478319	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	177478319	177478319	SPCS3	4	A	A	T	1
EGR1	1958	broad.mit.edu	36	5	137831487	137831487	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	137831487	137831487	EGR1	5	T	T	G	50
PCDHA9	9752	broad.mit.edu	36	5	140209912	140209912	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140209912	140209912	PCDHA9	5	A	A	T	10
GCM2	9247	broad.mit.edu	36	6	10982436	10982436	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10982436	10982436	GCM2	6	C	C	T	23
HFE	3077	broad.mit.edu	36	6	26199585	26199585	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	26199585	26199585	HFE	6	C	C	A	20
GNL1	2794	broad.mit.edu	36	6	30622910	30622910	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30622910	30622910	GNL1	6	G	G	A	43
C6orf138	442213	broad.mit.edu	36	6	48084503	48084503	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48084503	48084503	C6orf138	6	G	G	C	35
TCF21	6943	broad.mit.edu	36	6	134252467	134252467	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134252467	134252467	TCF21	6	A	A	C	7
FOXK1	221937	broad.mit.edu	36	7	4767323	4767323	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4767323	4767323	FOXK1	7	C	C	G	19
MOGAT3	346606	broad.mit.edu	36	7	100630758	100630758	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100630758	100630758	MOGAT3	7	A	A	T	9
FAM131B	9715	broad.mit.edu	36	7	142766149	142766149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	142766149	142766149	FAM131B	7	C	C	T	22
USP17L2	377630	broad.mit.edu	36	8	12032685	12032685	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12032685	12032685	USP17L2	8	C	C	T	31
WRN	7486	broad.mit.edu	36	8	31044217	31044217	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31044217	31044217	WRN	8	C	C	G	20
ADAM18	8749	broad.mit.edu	36	8	39622094	39622094	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	39622094	39622094	ADAM18	8	T	T	C	51
TMEM70	54968	broad.mit.edu	36	8	75051189	75051189	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75051189	75051189	TMEM70	8	C	C	A	30
ANKRD20A2	441430	broad.mit.edu	36	9	42358515	42358515	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42358515	42358515	ANKRD20A2	9	G	G	T	33
RABGAP1	23637	broad.mit.edu	36	9	124786734	124786734	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	124786734	124786734	RABGAP1	9	C	C	G	32
ADAMTS13	11093	broad.mit.edu	36	9	135309450	135309450	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135309450	135309450	ADAMTS13	9	A	A	T	7
BMX	660	broad.mit.edu	36	X	15458069	15458069	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15458069	15458069	BMX	23	A	A	C	1
FAM48B1	100130302	broad.mit.edu	36	X	24292685	24292685	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24292685	24292685	FAM48B1	23	T	T	C	55
POLA1	5422	broad.mit.edu	36	X	24655819	24655819	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	24655819	24655819	POLA1	23	G	G	C	33
PAK3	5063	broad.mit.edu	36	X	110277693	110277693	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	110277693	110277693	PAK3	23	C	C	T	17
GPR50	9248	broad.mit.edu	36	X	150099212	150099212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	150099212	150099212	GPR50	23	G	G	T	47
DMKN	93099	broad.mit.edu	36	19	40694202	40694252	+	In_Frame_Del	DEL	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	-	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	40694202	40694252	DMKN	19	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	-	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	20
TMEM22	80723	broad.mit.edu	36	3	138056192	138056206	+	In_Frame_Del	DEL	CTTTCTTTGGAACCA	-	CTTTCTTTGGAACCA	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	138056192	138056206	TMEM22	3	CTTTCTTTGGAACCA	-	CTTTCTTTGGAACCA	28
GPR20	2843	broad.mit.edu	36	8	142436438	142436439	+	Frame_Shift_Del	DEL	GG	-	GG	novel	Unknown	TCGA-25-2042-01	TCGA-25-2042-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	142436438	142436439	GPR20	8	GG	-	GG	35
