Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TMCO2	127391	broad.mit.edu	36	1	40489833	40489833	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40489833	40489833	TMCO2	1	G	G	C	35
RPS8	6202	broad.mit.edu	36	1	45016024	45016024	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45016024	45016024	RPS8	1	G	G	T	47
OSBPL9	114883	broad.mit.edu	36	1	51952316	51952316	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51952316	51952316	OSBPL9	1	C	C	A	32
EPS8L3	79574	broad.mit.edu	36	1	110103833	110103833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110103833	110103833	EPS8L3	1	A	A	G	4
OLFML2B	25903	broad.mit.edu	36	1	160236674	160236675	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	160236674	160236675	OLFML2B	1	CC	CC	AA	26
SLC26A9	115019	broad.mit.edu	36	1	204171506	204171506	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	204171506	204171506	SLC26A9	1	A	A	T	8
HLX	3142	broad.mit.edu	36	1	219119876	219119876	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	219119876	219119876	HLX	1	G	G	T	39
LRRC18	474354	broad.mit.edu	36	10	49792137	49792137	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49792137	49792137	LRRC18	10	T	T	A	52
BMPR1A	657	broad.mit.edu	36	10	88641943	88641943	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88641943	88641943	BMPR1A	10	G	G	A	45
OR5J2	282775	broad.mit.edu	36	11	55701170	55701170	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55701170	55701170	OR5J2	11	C	C	G	24
STIP1	10963	broad.mit.edu	36	11	63718643	63718643	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	63718643	63718643	STIP1	11	C	C	T	19
ACTN3	89	broad.mit.edu	36	11	66087148	66087148	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66087148	66087148	ACTN3	11	C	C	A	23
SLC36A4	120103	broad.mit.edu	36	11	92540844	92540844	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92540844	92540844	SLC36A4	11	C	C	G	29
CD163L1	283316	broad.mit.edu	36	12	7413464	7413464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7413464	7413464	CD163L1	12	G	G	A	34
CNTN1	1272	broad.mit.edu	36	12	39694366	39694366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39694366	39694366	CNTN1	12	C	C	T	27
VDR	7421	broad.mit.edu	36	12	46537578	46537578	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46537578	46537578	VDR	12	G	G	C	35
PAH	5053	broad.mit.edu	36	12	101770838	101770838	+	Nonsense_Mutation	SNP	G	G	A	rs5030846	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	101770838	101770838	PAH	12	G	G	A	39
CRY1	1407	broad.mit.edu	36	12	105917967	105917967	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	105917967	105917967	CRY1	12	T	T	C	58
OR4K15	81127	broad.mit.edu	36	14	19513894	19513894	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19513894	19513894	OR4K15	14	T	T	A	62
PROX2	283571	broad.mit.edu	36	14	74399290	74399290	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	74399290	74399290	PROX2	14	A	A	T	5
TTBK2	146057	broad.mit.edu	36	15	40831560	40831560	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	40831560	40831560	TTBK2	15	C	C	T	21
ISL2	64843	broad.mit.edu	36	15	74417365	74417365	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	74417365	74417365	ISL2	15	T	T	C	59
NTRK3	4916	broad.mit.edu	36	15	86277384	86277384	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86277384	86277384	NTRK3	15	A	A	T	4
OR2C1	4993	broad.mit.edu	36	16	3346250	3346250	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3346250	3346250	OR2C1	16	C	C	T	32
JPH3	57338	broad.mit.edu	36	16	86235798	86235798	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86235798	86235798	JPH3	16	G	G	T	34
STAT3	6774	broad.mit.edu	36	17	37752228	37752228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37752228	37752228	STAT3	17	G	G	C	42
FZD2	2535	broad.mit.edu	36	17	39991386	39991386	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	39991386	39991386	FZD2	17	A	A	G	15
MGAT5B	146664	broad.mit.edu	36	17	72389851	72389851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72389851	72389851	MGAT5B	17	G	G	A	39
SUPT5H	6829	broad.mit.edu	36	19	44635845	44635845	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	44635845	44635845	SUPT5H	19	G	G	T	33
CEACAM1	634	broad.mit.edu	36	19	47717295	47717295	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47717295	47717295	CEACAM1	19	A	A	C	7
SYMPK	8189	broad.mit.edu	36	19	51030228	51030228	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51030228	51030228	SYMPK	19	C	C	T	28
ZNF415	55786	broad.mit.edu	36	19	58311415	58311415	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58311415	58311415	ZNF415	19	A	A	C	8
PRKCE	5581	broad.mit.edu	36	2	46082066	46082066	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46082066	46082066	PRKCE	2	C	C	T	18
VWA3B	200403	broad.mit.edu	36	2	98286608	98286608	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	98286608	98286608	VWA3B	2	T	T	A	54
TTN	7273	broad.mit.edu	36	2	179107331	179107331	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179107331	179107331	TTN	2	C	C	G	32
DIDO1	11083	broad.mit.edu	36	20	60983697	60983697	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60983697	60983697	DIDO1	20	G	G	A	40
NPBWR2	2832	broad.mit.edu	36	20	62208521	62208521	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	62208521	62208521	NPBWR2	20	G	G	T	35
SLC26A6	65010	broad.mit.edu	36	3	48645960	48645960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48645960	48645960	SLC26A6	3	G	G	T	38
C3orf22	152065	broad.mit.edu	36	3	127753558	127753558	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	127753558	127753558	C3orf22	3	C	C	A	18
ACAD11	84129	broad.mit.edu	36	3	133846346	133846346	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	133846346	133846346	ACAD11	3	A	A	G	9
KY	339855	broad.mit.edu	36	3	135822366	135822366	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	135822366	135822366	KY	3	G	G	A	40
KCNAB1	7881	broad.mit.edu	36	3	157714893	157714893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	157714893	157714893	KCNAB1	3	G	G	A	48
ANKRD17	26057	broad.mit.edu	36	4	74238557	74238557	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74238557	74238557	ANKRD17	4	C	C	T	17
GALNTL6	442117	broad.mit.edu	36	4	173967244	173967244	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	173967244	173967244	GALNTL6	4	C	C	A	29
BTN3A1	11119	broad.mit.edu	36	6	26514145	26514145	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26514145	26514145	BTN3A1	6	C	C	T	26
BAT2	7916	broad.mit.edu	36	6	31703919	31703919	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31703919	31703919	BAT2	6	G	G	T	47
SYNGAP1	8831	broad.mit.edu	36	6	33507998	33507998	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33507998	33507998	SYNGAP1	6	C	C	T	30
PKHD1	5314	broad.mit.edu	36	6	51809160	51809160	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	51809160	51809160	PKHD1	6	C	C	A	18
BEND3	57673	broad.mit.edu	36	6	107526493	107526493	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	107526493	107526493	BEND3	6	C	C	G	25
PNLDC1	154197	broad.mit.edu	36	6	160160303	160160303	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	160160303	160160303	PNLDC1	6	G	G	C	43
HIP1	3092	broad.mit.edu	36	7	75021418	75021418	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	75021418	75021418	HIP1	7	G	G	C	43
FAM180A	389558	broad.mit.edu	36	7	135069408	135069408	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135069408	135069408	FAM180A	7	G	G	C	48
TNKS	8658	broad.mit.edu	36	8	9647523	9647523	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9647523	9647523	TNKS	8	C	C	T	31
LGI3	203190	broad.mit.edu	36	8	22061981	22061981	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22061981	22061981	LGI3	8	G	G	T	36
ANK1	286	broad.mit.edu	36	8	41699886	41699886	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41699886	41699886	ANK1	8	G	G	T	44
CHD7	55636	broad.mit.edu	36	8	61940738	61940738	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61940738	61940738	CHD7	8	T	T	C	58
SLCO5A1	81796	broad.mit.edu	36	8	70747889	70747889	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70747889	70747889	SLCO5A1	8	C	C	G	32
ADAMTSL1	92949	broad.mit.edu	36	9	18896802	18896802	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18896802	18896802	ADAMTSL1	9	G	G	T	48
HAUS6	54801	broad.mit.edu	36	9	19053008	19053008	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19053008	19053008	HAUS6	9	C	C	T	32
NOL6	65083	broad.mit.edu	36	9	33456615	33456615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33456615	33456615	NOL6	9	C	C	T	29
CCIN	881	broad.mit.edu	36	9	36160503	36160503	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36160503	36160503	CCIN	9	C	C	A	18
HIATL1	84641	broad.mit.edu	36	9	96247096	96247096	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	96247096	96247096	HIATL1	9	C	C	T	29
USP26	83844	broad.mit.edu	36	X	131987996	131987996	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01	TCGA-59-2354-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131987996	131987996	USP26	23	G	G	C	33
