Esophageal carcinoma (ESCA) Samples Report
Overview
Introduction

The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, lists those samples that are removed, and gives all available annotations from the DCC's Annotation Manager.

Summary

There were 0 redactions, 0 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  This table provides a breakdown of sample counts on a per sample type and, if applicable, per subtype basis. Each count is a link to a table containing a list of the samples that comprise that count and details pertaining to each individual sample (e.g. platform, sequencing center, etc.). Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.

Sample Type BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
TP 126 39 81 32 93 0 0 0 72 0 0
NB 59 24 58 22 0 0 0 0 0 0 0
NT 26 13 25 12 14 0 0 0 9 0 0
Totals 126 39 81 32 93 0 0 0 72 0 0
ESCA Primary Solid Tumor BCR Data

Table S1. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IC-A6RF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3I8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3QL Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3Y9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YC Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4P3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4QT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A50L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A51D Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A5B8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A5S3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A625 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A6QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A7DP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A8O2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6F8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FD Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-KH-A6WC Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43C Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43E Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43H Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43I Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43J Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43M Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OI Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OM Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4ON Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88S Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88T Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88V Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A88Z Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A891 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A893 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A8NJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A8NQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A8NU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L7-A56G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L7-A6VZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49K Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49M Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49N Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49O Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49P Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49S Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49V Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49X Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4MQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4MR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A7HV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A7HW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A7HX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A7HY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A7HZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A8HZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A8I0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A8I1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-M9-A5M8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-Q9-A6FU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-Q9-A6FW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6DN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6DQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6L6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6XG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6XQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6Y0 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6Y2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-RE-A7BO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-S8-A6BV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-S8-A6BW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-V5-A7RB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-V5-A7RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8ER Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EY Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-VR-A8EZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-XP-A8T6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-XP-A8T7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-XP-A8T8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-Z6-A8JD Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
ESCA Primary Solid Tumor Clinical Data

Table S2. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3Y9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A3YA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A3YB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A4P3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A4QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A50L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A51D Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A5B8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A625 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A7DP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A43J Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OM Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4ON Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A891 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L7-A6VZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49O Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49S Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49V Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4MQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-Q9-A6FU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-S8-A6BV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
ESCA Primary Solid Tumor CN Data

Table S3. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IC-A6RF-01A-13D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RF-01A-13D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RF-01A-13D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RF-01A-13D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RF-01A-13D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3I8-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3I8-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3I8-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3I8-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3I8-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3QL-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3QL-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3QL-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3QL-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3QL-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3Y9-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3Y9-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3Y9-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3Y9-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3Y9-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3YA-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3YA-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3YA-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3YA-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3YA-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3YB-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3YB-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3YB-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3YB-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3YB-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3YC-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3YC-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3YC-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3YC-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3YC-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4P3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4P3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4P3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4P3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4P3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4QS-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4QS-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4QS-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4QS-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4QS-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4QT-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4QT-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4QT-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4QT-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4QT-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A50L-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A50L-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A50L-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A50L-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A50L-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A51D-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A51D-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A51D-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A51D-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A51D-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A5B8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A5B8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A5B8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A5B8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A5B8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A5S3-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A5S3-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A5S3-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A5S3-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A5S3-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A625-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A625-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A625-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A625-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A625-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A7DP-01A-31D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A7DP-01A-31D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A7DP-01A-31D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A7DP-01A-31D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A7DP-01A-31D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FD-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FD-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FD-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FD-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FD-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FE-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FH-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FH-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FH-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FH-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FH-01A-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43C-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43C-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43C-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43C-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43C-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43E-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43E-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43E-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43E-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43E-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43H-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43H-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43H-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43H-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43H-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43I-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43I-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43I-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43I-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43I-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43J-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43J-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43J-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43J-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43J-01A-12D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43M-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43M-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43M-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43M-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43M-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OE-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OE-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OE-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OE-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OE-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OF-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OF-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OF-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OF-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OF-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OG-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OG-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OG-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OG-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OG-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OH-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OH-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OH-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OH-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OH-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OI-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OI-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OI-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OI-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OI-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OJ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OJ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OJ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OJ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OJ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OM-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OM-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OM-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OM-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OM-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4ON-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4ON-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4ON-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4ON-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4ON-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OO-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OO-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OO-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OO-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OO-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OP-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OP-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OP-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OP-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OP-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OQ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OQ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OQ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OQ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OQ-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OR-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OR-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OR-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OR-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OR-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OS-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OS-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OS-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OS-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OS-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OT-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OT-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OT-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OT-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OT-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OU-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OU-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OU-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OU-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OU-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OW-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OW-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OW-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OW-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OW-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OX-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OX-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OX-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OX-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OX-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L7-A56G-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L7-A56G-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L7-A56G-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L7-A56G-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L7-A56G-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49K-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49K-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49K-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49K-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49K-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49L-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49L-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49L-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49L-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49L-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49M-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49M-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49M-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49M-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49M-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49N-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49N-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49N-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49N-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49N-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49O-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49O-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49O-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49O-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49O-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49P-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49P-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49P-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49P-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49P-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49R-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49R-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49R-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49R-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49R-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49S-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49S-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49S-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49S-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49S-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49U-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49U-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49U-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49U-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49U-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49V-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49V-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49V-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49V-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49V-01A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49W-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49W-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49W-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49W-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49W-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49X-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49X-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49X-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49X-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49X-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49Y-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49Y-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49Y-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49Y-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49Y-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A1-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A1-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A1-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A1-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A1-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A2-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A2-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A2-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A2-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A2-01A-31D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A3-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A4-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A4-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A4-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A4-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A4-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A5-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A5-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A5-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A5-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A5-01A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A6-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A6-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A6-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A6-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A6-01A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A8-01A-32D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A8-01A-32D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A8-01A-32D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A8-01A-32D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A8-01A-32D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A9-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A9-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A9-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A9-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A9-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4MQ-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4MQ-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4MQ-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4MQ-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4MQ-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4MR-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4MR-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4MR-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4MR-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4MR-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U5-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U5-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U5-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U5-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U5-01A-21D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U6-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U6-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U6-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U6-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U6-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U7-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U7-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U7-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U7-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U7-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-M9-A5M8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-M9-A5M8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-M9-A5M8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-M9-A5M8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-M9-A5M8-01A-11D-A28A-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-Q9-A6FU-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-Q9-A6FU-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-Q9-A6FU-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-Q9-A6FU-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-Q9-A6FU-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-Q9-A6FW-01A-31D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-Q9-A6FW-01A-31D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-Q9-A6FW-01A-31D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-Q9-A6FW-01A-31D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-Q9-A6FW-01A-31D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6DN-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6DN-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6DN-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6DN-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6DN-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6DQ-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6DQ-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6DQ-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6DQ-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6DQ-01B-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6KZ-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6KZ-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6KZ-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6KZ-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6KZ-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6L4-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6L4-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6L4-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6L4-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6L4-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6L6-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6L6-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6L6-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6L6-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6L6-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6XG-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6XG-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6XG-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6XG-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6XG-01B-11D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-S8-A6BV-01A-21D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-S8-A6BV-01A-21D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-S8-A6BV-01A-21D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-S8-A6BV-01A-21D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-S8-A6BV-01A-21D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-S8-A6BW-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-S8-A6BW-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-S8-A6BW-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-S8-A6BW-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-S8-A6BW-01A-11D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
ESCA Primary Solid Tumor LowP Data

Table S4. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3I8-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3QL-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3Y9-01A-12D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YA-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YB-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YC-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A51D-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43C-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43E-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43H-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43I-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43J-01A-12D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43M-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OE-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OF-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OG-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OH-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OP-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L7-A56G-01A-21D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49K-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49L-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49M-01A-21D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49N-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49O-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49P-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49R-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49S-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49U-01A-31D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49V-01A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A2-01A-31D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A3-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A4-01A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
ESCA Primary Solid Tumor Methylation Data

Table S5. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IC-A6RF-01A-13D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3I8-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3QL-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3Y9-01A-12D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3YA-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3YB-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3YC-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A4P3-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A4QS-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A4QT-01A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A50L-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A51D-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A5B8-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A5S3-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A625-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A6QS-01A-12D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A7DP-01A-31D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6F8-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FA-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FB-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FD-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FE-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FG-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-JY-A6FH-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-KH-A6WC-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43C-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43E-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43H-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43I-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43J-01A-12D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43M-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OE-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OF-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OG-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OH-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OI-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OJ-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OM-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4ON-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OO-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OP-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OQ-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OR-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OS-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OT-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OU-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OW-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OX-01A-21D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L7-A56G-01A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L7-A6VZ-01A-12D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49K-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49L-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49M-01A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49N-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49O-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49P-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49R-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49S-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49U-01A-31D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49V-01A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49W-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49X-01A-31D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A49Y-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A1-01A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A2-01A-31D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A3-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A4-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A5-01A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A6-01A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A8-01A-32D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4A9-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4MQ-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A4MR-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A5U5-01A-21D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A5U6-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A5U7-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-LN-A7HX-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-M9-A5M8-01A-11D-A28C-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-Q9-A6FU-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-Q9-A6FW-01A-31D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6DN-01B-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6DQ-01B-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6KZ-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6L4-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6L6-01B-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6XG-01B-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6XQ-01B-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6Y0-01B-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-R6-A6Y2-01B-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-RE-A7BO-01A-11D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-S8-A6BV-01A-21D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-S8-A6BW-01A-11D-A31V-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
ESCA Primary Solid Tumor miRSeq Data

Table S6. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3I8-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3I8-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A3QL-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3QL-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A3Y9-01A-12R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3Y9-01A-12R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A3YA-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3YA-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A3YB-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3YB-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A3YC-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3YC-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A4P3-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A4P3-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A4QS-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A4QS-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A4QT-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A4QT-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A50L-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A50L-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A51D-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A51D-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A5B8-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A5B8-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A5S3-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A5S3-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-IG-A625-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A625-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43C-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43C-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43E-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43E-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43H-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43H-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43I-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43I-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43J-01A-12R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43J-01A-12R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43M-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43M-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OE-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OE-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OF-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OF-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OG-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OG-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OH-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OH-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OI-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OI-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OJ-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OJ-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OM-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OM-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4ON-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4ON-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OO-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OO-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OP-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OP-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OQ-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OQ-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OR-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OR-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OS-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OS-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OT-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OT-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OU-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OU-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OW-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OW-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OX-01A-21R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OX-01A-21R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L7-A56G-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L7-A56G-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49K-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49K-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49L-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49L-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49M-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49M-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49N-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49N-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49O-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49O-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49P-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49P-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49R-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49R-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49S-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49S-01A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49U-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49U-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49W-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49W-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49X-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49X-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A49Y-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A49Y-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A1-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A1-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A2-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A2-01A-31R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A3-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A3-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A4-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A4-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A5-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A5-01A-21R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A6-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A6-01A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A8-01A-32R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A8-01A-32R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4A9-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4A9-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4MQ-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4MQ-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A4MR-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A4MR-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A5U5-01A-21R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A5U5-01A-21R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A5U6-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A5U6-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-LN-A5U7-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-LN-A5U7-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-M9-A5M8-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-M9-A5M8-01A-11R-A28K-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-Q9-A6FU-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-Q9-A6FU-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-Q9-A6FW-01A-31R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-Q9-A6FW-01A-31R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-R6-A6DN-01B-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-R6-A6DN-01B-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-R6-A6DQ-01B-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-R6-A6DQ-01B-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-R6-A6KZ-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-R6-A6KZ-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-R6-A6L4-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-R6-A6L4-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-S8-A6BV-01A-21R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-S8-A6BV-01A-21R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-S8-A6BW-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-S8-A6BW-01A-11R-A31Q-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
ESCA Blood Derived Normal BCR Data

Table S7. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IC-A6RF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3I8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3QL Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3Y9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3YC Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4P3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A4QT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A50L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A51D Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A5B8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A5S3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A625 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A7DP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FD Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-JY-A6FH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43E Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L7-A56G Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49K Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49M Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49N Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49O Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49P Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49R Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49S Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49V Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49W Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49X Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A49Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4A9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4MQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A4MR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-LN-A5U7 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-M9-A5M8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-Q9-A6FU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-Q9-A6FW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6DN Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6DQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6KZ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6L4 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6L6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-R6-A6XG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-S8-A6BV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-S8-A6BW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
ESCA Blood Derived Normal Clinical Data

Table S8. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3Y9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A3YA Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A3YB Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A4P3 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A4QS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A50L Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A51D Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A5B8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A625 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-IG-A7DP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49O Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49S Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49U Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49V Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A49Y Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A1 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A2 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A5 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A6 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4A9 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-LN-A4MQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-Q9-A6FU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-S8-A6BV Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
ESCA Blood Derived Normal CN Data

Table S9. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IC-A6RF-10A-21D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RF-10A-21D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RF-10A-21D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RF-10A-21D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RF-10A-21D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3I8-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3I8-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3I8-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3I8-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3I8-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3QL-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3QL-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3QL-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3QL-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3QL-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3Y9-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3Y9-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3Y9-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3Y9-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3Y9-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3YA-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3YA-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3YA-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3YA-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3YA-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3YB-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3YB-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3YB-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3YB-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3YB-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4P3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4P3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4P3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4P3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4P3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4QS-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4QS-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4QS-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4QS-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4QS-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A4QT-10A-02D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A4QT-10A-02D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A4QT-10A-02D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A4QT-10A-02D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A4QT-10A-02D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A50L-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A50L-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A50L-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A50L-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A50L-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A51D-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A51D-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A51D-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A51D-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A51D-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A5B8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A5B8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A5B8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A5B8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A5B8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A5S3-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A5S3-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A5S3-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A5S3-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A5S3-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A625-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A625-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A625-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A625-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A625-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A7DP-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A7DP-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A7DP-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A7DP-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A7DP-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FD-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FD-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FD-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FD-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FD-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FE-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-JY-A6FH-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-JY-A6FH-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-JY-A6FH-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-JY-A6FH-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-JY-A6FH-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43E-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43E-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43E-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43E-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43E-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L7-A56G-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L7-A56G-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L7-A56G-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L7-A56G-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L7-A56G-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49K-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49K-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49K-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49K-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49K-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49L-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49L-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49L-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49L-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49L-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49M-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49M-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49M-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49M-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49M-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49N-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49N-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49N-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49N-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49N-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49O-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49O-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49O-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49O-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49O-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49P-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49P-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49P-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49P-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49P-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49R-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49R-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49R-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49R-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49R-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49S-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49S-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49S-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49S-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49S-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49U-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49U-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49U-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49U-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49U-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49V-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49V-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49V-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49V-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49V-10A-01D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49W-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49W-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49W-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49W-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49W-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49X-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49X-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49X-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49X-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49X-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A49Y-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A49Y-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A49Y-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A49Y-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A49Y-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A1-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A1-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A1-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A1-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A1-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A2-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A2-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A2-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A2-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A2-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A3-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A4-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A4-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A4-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A4-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A4-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A5-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A5-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A5-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A5-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A5-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A6-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A6-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A6-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A6-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A6-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A8-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A8-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A8-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A8-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A8-10A-01D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4A9-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4A9-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4A9-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4A9-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4A9-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4MQ-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4MQ-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4MQ-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4MQ-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4MQ-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A4MR-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A4MR-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A4MR-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A4MR-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A4MR-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U5-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U5-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U5-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U5-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U5-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U6-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U6-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U6-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U6-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U6-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-LN-A5U7-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-LN-A5U7-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-LN-A5U7-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-LN-A5U7-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-LN-A5U7-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-M9-A5M8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-M9-A5M8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-M9-A5M8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-M9-A5M8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-M9-A5M8-10A-01D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-Q9-A6FU-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-Q9-A6FU-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-Q9-A6FU-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-Q9-A6FU-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-Q9-A6FU-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-Q9-A6FW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-Q9-A6FW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-Q9-A6FW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-Q9-A6FW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-Q9-A6FW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6DN-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6DN-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6DN-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6DN-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6DN-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6DQ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6DQ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6DQ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6DQ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6DQ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6KZ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6KZ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6KZ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6KZ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6KZ-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6L4-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6L4-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6L4-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6L4-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6L4-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6L6-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6L6-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6L6-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6L6-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6L6-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-R6-A6XG-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-R6-A6XG-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-R6-A6XG-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-R6-A6XG-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-R6-A6XG-10A-01D-A33G-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-S8-A6BV-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-S8-A6BV-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-S8-A6BV-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-S8-A6BV-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-S8-A6BV-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-S8-A6BW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-S8-A6BW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-S8-A6BW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-S8-A6BW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-S8-A6BW-10A-01D-A31T-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
ESCA Blood Derived Normal LowP Data

Table S10. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3I8-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3QL-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3Y9-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YA-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YB-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A3YC-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-IG-A51D-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43E-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L7-A56G-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49K-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49L-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49M-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49N-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49O-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49P-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49R-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49S-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49U-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A49V-10A-01D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A2-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A3-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-LN-A4A4-10A-01D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
ESCA Solid Tissue Normal BCR Data

Table S11. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IC-A6RF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-IG-A3I8 Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43C Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43E Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43H Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43I Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43J Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A43M Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OH Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OI Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OJ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OM Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4ON Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OP Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OT Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
TCGA-L5-A4OX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 biospecimen
ESCA Solid Tissue Normal Clinical Data

Table S12. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-L5-A43J Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OE Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OF Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OG Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OM Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4ON Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OO Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OQ Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OR Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OS Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OU Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OW Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
TCGA-L5-A4OX Biospecimen Metadata - Complete Set Nationwide Children's Hospital 1 clinical
ESCA Solid Tissue Normal CN Data

Table S13. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE-11A-12D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RE-11A-12D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RE-11A-12D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RE-11A-12D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RE-11A-12D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IC-A6RF-11A-21D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IC-A6RF-11A-21D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IC-A6RF-11A-21D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IC-A6RF-11A-21D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IC-A6RF-11A-21D-A33D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-IG-A3I8-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-IG-A3I8-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-IG-A3I8-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-IG-A3I8-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-IG-A3I8-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43C-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43C-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43C-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43C-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43C-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43E-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43E-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43E-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43E-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43E-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43H-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43H-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43H-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43H-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43H-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43I-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43I-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43I-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43I-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43I-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A43J-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A43J-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A43J-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A43J-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A43J-11A-11D-A246-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OE-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OE-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OE-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OE-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OE-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OF-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OF-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OF-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OF-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OF-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OG-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OG-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OG-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OG-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OG-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OH-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OH-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OH-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OH-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OH-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OI-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OI-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OI-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OI-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OI-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OJ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OJ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OJ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OJ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OJ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OM-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OM-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OM-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OM-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OM-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4ON-11A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4ON-11A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4ON-11A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4ON-11A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4ON-11A-21D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OO-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OO-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OO-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OO-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OO-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OP-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OP-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OP-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OP-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OP-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OQ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OQ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OQ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OQ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OQ-11A-12D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OR-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OR-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OR-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OR-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OR-11A-11D-A25X-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OS-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OS-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OS-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OS-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OS-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OT-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OT-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OT-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OT-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OT-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OU-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OU-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OU-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OU-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OU-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OW-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OW-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OW-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OW-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OW-11A-11D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
TCGA-L5-A4OX-11A-13D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 2 birdseed_genotype
TCGA-L5-A4OX-11A-13D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg18
TCGA-L5-A4OX-11A-13D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_hg19
TCGA-L5-A4OX-11A-13D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg18
TCGA-L5-A4OX-11A-13D-A28D-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute 3 segmented_scna_minus_germline_cnv_hg19
ESCA Solid Tissue Normal LowP Data

Table S14. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3I8-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43C-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43E-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43H-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43I-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43J-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A43M-11A-11D-A248-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OE-11A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OF-11A-12D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OG-11A-12D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OH-11A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
TCGA-L5-A4OP-11A-11D-A267-26 Illumina HiSeq for Copy Number Variation Harvard Medical School 3 segmentation
ESCA Solid Tissue Normal Methylation Data

Table S15. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IC-A6RE-11A-12D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IC-A6RF-11A-21D-A33F-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-IG-A3I8-11A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A43C-11A-11D-A249-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OE-11A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OF-11A-12D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OG-11A-12D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OH-11A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OI-11A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OJ-11A-12D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OM-11A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4ON-11A-21D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OP-11A-11D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-L5-A4OQ-11A-12D-A265-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
ESCA Solid Tissue Normal miRSeq Data

Table S16. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-IG-A3I8-11A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-IG-A3I8-11A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A43C-11A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A43C-11A-11R-A24L-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OF-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OF-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OG-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OG-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OJ-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OJ-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OM-11A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OM-11A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OO-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OO-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OQ-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OQ-11A-12R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-L5-A4OR-11A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-L5-A4OR-11A-11R-A261-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression

The following platforms are outdated and are not included in the counts depicted in the table above.

  • Agilent SurePrint G3 Human CGH Microarray Kit 1x1M

  • Agilent Human Genome CGH Microarray 244A

  • Agilent Human Genome CGH Custom Microarray 2x415K

  • Affymetrix Human Exon 1.0 ST Array

  • Illumina DNA Methylation OMA002 Cancer Panel I

  • Illumina DNA Methylation OMA003 Cancer Panel I

  • Illumina Human1M-Duo BeadChip

  • Illumina 550K Infinium HumanHap550 SNP Chip

The sample type short letter codes in the table above are defined in the following list.

  • TP: Primary Solid Tumor

  • TR: Recurrent Solid Tumor

  • TB: Primary Blood Derived Cancer - Peripheral Blood

  • TAP: Additional - New Primary

  • TM: Metastatic

  • TAM: Additional Metastatic

  • NB: Blood Derived Normal

  • NT: Solid Tissue Normal

Figure 1.  Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Results
FFPE Cases
Additional Annotations from the DCC's Annotations Manager
Methods & Data
Redactions and Other Annotations

Annotation data was taken from theTCGA Data Portalusing the query string:

https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?item=TCGA

Redaction information was generated by filtering for the annotationClassificationName "Redaction"

FFPE information was generated by filtering for "FFPE" in annotation note text

Additional FFPEs were garnered from clinical data

Remaining annotations were sorted into sections by annotationClassificationName

Preprocessors
mRNA Preprocessor

The mRNA preprocess median module chooses the matrix for the platform(Affymetrix HG U133, Affymetrix Exon Array and Agilent Gene Expression) with the largest number of samples.

mRNAseq Preprocessor

The mRNAseq preprocessor picks the "scaled_estimate" (RSEM) value from Illumina HiSeq/GA2 mRNAseq level_3 (v2) data set and makes the mRNAseq matrix with log2 transformed for the downstream analysis. If there are overlap samples between two different platforms, samples from illumina hiseq will be selected. The pipeline also creates the matrix with RPKM and log2 transform from HiSeq/GA2 mRNAseq level 3 (v1) data set.

miRseq Preprocessor

The miRseq preprocessor picks the "RPM" (reads per million miRNA precursor reads) from the Illumina HiSeq/GA miRseq Level_3 data set and makes the matrix with log2 transformed values.

Methylation Preprocessor

The methylation preprocessor filters methylation data for use in downstream pipelines. To learn more about this preprocessor, please visit the documentation.