stddata__2014_03_16 Samples Report
- Overview
+ Introduction
- Summary

There were 160 redactions, 2852 replicate aliquots, 23 blacklisted aliquots, and 577 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 15 90 0 80 0 79 0 80 0 90
BLCA 268 198 252 112 242 0 241 0 241 127 130
BRCA 1061 981 1041 19 1024 526 1037 0 1021 408 976
CESC 242 127 192 0 189 0 185 0 200 0 39
COAD 448 436 427 69 434 153 432 0 406 331 154
COADREAD 616 604 589 104 596 222 595 0 549 461 223
DLBC 38 21 28 0 28 0 28 0 27 0 0
ESCA 165 39 97 32 93 0 0 0 72 0 0
GBM 607 578 570 0 414 540 160 565 0 214 290
HNSC 517 408 509 108 457 0 497 0 512 212 306
KICH 113 93 66 0 66 0 66 0 66 0 66
KIRC 536 507 514 0 511 72 518 0 502 454 417
KIRP 259 164 182 0 198 16 172 0 198 0 168
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 305 463 52 403 27 463 0 438 258 289
LIHC 240 151 190 0 194 0 191 0 200 0 0
LUAD 563 466 493 120 555 32 488 0 491 237 229
LUSC 493 411 490 0 492 154 489 0 467 195 178
MESO 37 13 37 0 37 0 0 0 0 0 0
OV 592 580 576 0 584 574 296 570 453 412 316
PAAD 113 73 91 0 91 0 85 0 85 0 91
PANCAN12 6009 5415 5756 569 5601 2174 4987 1135 4937 2920 3510
PCPG 179 10 0 0 179 0 0 0 0 0 0
PRAD 427 199 331 115 336 0 297 0 326 164 261
READ 168 168 162 35 162 69 163 0 143 130 69
SARC 199 102 137 0 170 0 103 0 136 0 0
SKCM 431 341 385 119 374 0 372 0 354 205 344
STAD 373 311 352 107 373 0 274 0 323 264 221
THCA 496 484 494 98 496 0 494 0 495 222 402
UCEC 556 482 525 106 532 54 527 0 513 200 248
UCS 57 57 56 0 57 0 57 0 56 0 57
Totals 9986 7920 8947 1092 8965 2217 7893 1135 7993 4033 5538
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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