FFPE Cases
FFPE description from TCGA Tissue Sample Requirements (2013)
FFPE (formalin fixed paraffin embedded) samples are not suitable for molecular analysis because the RNA and DNA are trapped in the nucleic acid-protein cross linking from the fixation process.
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Category | Notes |
|---|---|---|---|---|---|
| TCGA-A6-2672-01B-03D-2297-01 | 622b0cb2-6c15-42f3-b3ec-eff97d63797c | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2672-01B-03D-2297-01 | 622b0cb2-6c15-42f3-b3ec-eff97d63797c | 07/27/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'. |
| TCGA-A6-2672-01B-03D-2297-01 | 622b0cb2-6c15-42f3-b3ec-eff97d63797c | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'. |
| TCGA-A6-2672-01B-03D-2297-01 | 622b0cb2-6c15-42f3-b3ec-eff97d63797c | 09/11/2012 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'. |
| TCGA-A6-2672-01B-03D-2297-01 | 622b0cb2-6c15-42f3-b3ec-eff97d63797c | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'. |
| TCGA-A6-2672-01B-03D-2298-08 | ca943508-838b-4014-b577-8be89097933e | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2672-01B-03D-2299-05 | 8faa0b30-e6e3-42aa-936b-ffd928bd1902 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2672-01B-03D-2301-10 | 1241effb-2aef-4b12-b58b-69c8f2356a71 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2672-01B-03R-2302-07 | dcc36700-cd11-4235-a1a7-960c93fd88a8 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2672-01B-03R-2303-13 | b1a09e29-79ba-47c7-9d9c-fd47b3aae647 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-2677-01B-02D-A274-01 | 4be79593-92db-49f6-810c-2f4c6fb4d1b5 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404.tangent.copynumber.data.txt'. |
| TCGA-A6-2677-01B-02D-A274-01 | 4be79593-92db-49f6-810c-2f4c6fb4d1b5 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404.tangent.copynumber.data.txt'. |
| TCGA-A6-2677-10A-01D-A274-01 | 45315948-76f1-42ac-bacd-db8b92243d09 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B04_1347460.birdseed.data.txt'. |
| TCGA-A6-2677-10A-01D-A274-01 | 45315948-76f1-42ac-bacd-db8b92243d09 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B04_1347460.birdseed.data.txt'. |
| TCGA-A6-2684-01C-08D-A274-01 | 93718e05-a820-4e46-ac80-869463460c8a | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356.tangent.copynumber.data.txt'. |
| TCGA-A6-2684-01C-08D-A274-01 | 93718e05-a820-4e46-ac80-869463460c8a | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356.tangent.copynumber.data.txt'. |
| TCGA-A6-3809-01B-04D-A274-01 | ca3428c3-9390-45df-b348-baac03d34360 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320.tangent.copynumber.data.txt'. |
| TCGA-A6-3809-01B-04D-A274-01 | ca3428c3-9390-45df-b348-baac03d34360 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320.tangent.copynumber.data.txt'. |
| TCGA-A6-3810-01B-04D-A274-01 | ae4bc42b-e969-4f86-95f0-fb38d7525c0b | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418.tangent.copynumber.data.txt'. |
| TCGA-A6-3810-01B-04D-A274-01 | ae4bc42b-e969-4f86-95f0-fb38d7525c0b | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418.tangent.copynumber.data.txt'. |
| TCGA-A6-3810-10A-01D-A274-01 | d94172d0-8424-430c-bc0f-e8cc2c2f942f | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A04_1347372.birdseed.data.txt'. |
| TCGA-A6-3810-10A-01D-A274-01 | d94172d0-8424-430c-bc0f-e8cc2c2f942f | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A04_1347372.birdseed.data.txt'. |
| TCGA-A6-5656-01B-02D-A274-01 | 6a200b55-070e-4c0e-a79f-e87af7b2fcf2 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368.tangent.copynumber.data.txt'. |
| TCGA-A6-5656-01B-02D-A274-01 | 6a200b55-070e-4c0e-a79f-e87af7b2fcf2 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368.tangent.copynumber.data.txt'. |
| TCGA-A6-5656-10A-01D-A274-01 | 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C04_1347336.birdseed.data.txt'. |
| TCGA-A6-5656-10A-01D-A274-01 | 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C04_1347336.birdseed.data.txt'. |
| TCGA-A6-5659-01B-04D-A274-01 | 96229008-8c03-499c-896f-da967b353753 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448.tangent.copynumber.data.txt'. |
| TCGA-A6-5659-01B-04D-A274-01 | 96229008-8c03-499c-896f-da967b353753 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448.tangent.copynumber.data.txt'. |
| TCGA-A6-5661-01B-05D-2297-01 | 81a4f8c8-f77b-4ae6-b720-e8e925f84405 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5661-01B-05D-2297-01 | 81a4f8c8-f77b-4ae6-b720-e8e925f84405 | 07/27/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'. |
| TCGA-A6-5661-01B-05D-2297-01 | 81a4f8c8-f77b-4ae6-b720-e8e925f84405 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'. |
| TCGA-A6-5661-01B-05D-2297-01 | 81a4f8c8-f77b-4ae6-b720-e8e925f84405 | 09/11/2012 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'. |
| TCGA-A6-5661-01B-05D-2297-01 | 81a4f8c8-f77b-4ae6-b720-e8e925f84405 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'. |
| TCGA-A6-5661-01B-05D-2298-08 | 6dd5dfe9-9743-43d1-9aac-5456f0657d7f | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5661-01B-05D-2299-05 | b90ec3c5-fb49-4b46-a24b-d7488c416805 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5661-01B-05R-2302-07 | bc8680ed-09c6-4406-90ca-af7085fefd53 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5661-01B-05R-2303-13 | 89a38f1b-31b0-42c4-bf74-62d6d25d2000 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5665-01B-03D-2297-01 | 24eaa47c-2d95-433c-90e0-17686236a9b1 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5665-01B-03D-2297-01 | 24eaa47c-2d95-433c-90e0-17686236a9b1 | 07/27/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'. |
| TCGA-A6-5665-01B-03D-2297-01 | 24eaa47c-2d95-433c-90e0-17686236a9b1 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'. |
| TCGA-A6-5665-01B-03D-2297-01 | 24eaa47c-2d95-433c-90e0-17686236a9b1 | 09/11/2012 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'. |
| TCGA-A6-5665-01B-03D-2297-01 | 24eaa47c-2d95-433c-90e0-17686236a9b1 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'. |
| TCGA-A6-5665-01B-03D-2298-08 | 1644b065-a3bb-4c56-9b52-24fcf3256b96 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5665-01B-03D-2299-05 | 249222f0-9616-4133-9af5-5ab1c1c45275 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5665-01B-03R-2302-07 | e110017a-7907-42a5-a01d-c874dad24d0f | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-5665-01B-03R-2303-13 | cbb2ddcd-6578-47ec-9799-da98176cf4e7 | 06/26/2012 | COAD | Item is noncanonical | FFPE COAD Pilot 1 |
| TCGA-A6-6650-01B-02D-A274-01 | e1deceb3-47cc-46c5-9540-77ab6cedc597 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352.tangent.copynumber.data.txt'. |
| TCGA-A6-6650-01B-02D-A274-01 | e1deceb3-47cc-46c5-9540-77ab6cedc597 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352.tangent.copynumber.data.txt'. |
| TCGA-A6-6650-10A-01D-A274-01 | d2db47d7-e9b2-4691-800f-e4e91cb720d0 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D12_1347478.birdseed.data.txt'. |
| TCGA-A6-6650-10A-01D-A274-01 | d2db47d7-e9b2-4691-800f-e4e91cb720d0 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D12_1347478.birdseed.data.txt'. |
| TCGA-A6-6780-01B-04D-A274-01 | 2d7c1a55-660a-4075-ad6e-3a3d4da1838d | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432.tangent.copynumber.data.txt'. |
| TCGA-A6-6780-01B-04D-A274-01 | 2d7c1a55-660a-4075-ad6e-3a3d4da1838d | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432.tangent.copynumber.data.txt'. |
| TCGA-A6-6780-10A-01D-A274-01 | cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D03_1347380.birdseed.data.txt'. |
| TCGA-A6-6780-10A-01D-A274-01 | cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D03_1347380.birdseed.data.txt'. |
| TCGA-A6-6781-01B-06D-A274-01 | a86be412-93b1-4891-9eae-b2efe14f659b | 09/06/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440.tangent.copynumber.data.txt'. |
| TCGA-A6-6781-01B-06D-A274-01 | a86be412-93b1-4891-9eae-b2efe14f659b | 10/10/2013 | COAD | Item flagged DNU | SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440.tangent.copynumber.data.txt'. |