Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPSE2	60495	broad.mit.edu	36	10	100985376	100985376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166246	exon1	c.G174T	p.K58N	.	.	.
GOT1	2805	broad.mit.edu	36	10	101153346	101153346	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002079	exon7	c.G829T	p.E277X	.	.	.
SLC25A28	81894	broad.mit.edu	36	10	101363628	101363628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031212	exon2	c.G335A	p.R112H	.	.	.
ENTPD7	57089	broad.mit.edu	36	10	101454272	101454272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020354	exon13	c.C1657A	p.L553I	.	.	.
CUTC	51076	broad.mit.edu	36	10	101492972	101492972	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015960	exon4	c.T266A	p.F89Y	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101553989	101553989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon10	c.C1433T	p.A478V	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101559947	101559947	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon14	c.C1882T	p.R628X	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101581443	101581443	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon22	c.C2969A	p.S990Y	.	.	.
CWF19L1	55280	broad.mit.edu	36	10	102006144	102006144	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018294	exon5	c.A369G	p.V123V	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102041077	102041077	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016112	exon12	c.A1978C	p.K660Q	.	.	.
FBXW4	6468	broad.mit.edu	36	10	103361140	103361140	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022039	exon9	c.G1137A	p.S379S	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103762622	103762622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024541	exon10	c.G728A	p.G243E	.	.	.
GBF1	8729	broad.mit.edu	36	10	104117232	104117232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199378	exon21	c.G2567A	p.R856H	.	.	.
ACTR1A	10121	broad.mit.edu	36	10	104231831	104231831	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005736	exon8	c.T842G	p.F281C	.	.	.
TRIM8	81603	broad.mit.edu	36	10	104406546	104406546	+	Silent	SNP	C	T	T	rs41300235	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030912	exon6	c.C1101T	p.C367C	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106150508	106150508	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008723	exon13	c.G1896A	p.K632K	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106972911	106972911	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014978	exon20	c.A2782C	p.N928H	.	.	.
IDI1	3422	broad.mit.edu	36	10	1079330	1079330	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004508	exon3	c.T317G	p.L106X	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114901550	114901550	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146284	exon9	c.T997C	p.Y333H	.	.	.
NRAP	4892	broad.mit.edu	36	10	115375824	115375824	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198060	exon21	c.C2216G	p.A739G	.	.	.
NRAP	4892	broad.mit.edu	36	10	115396686	115396686	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198060	exon10	c.G979A	p.E327K	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11545581	11545581	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014688	exon15	c.G1352T	p.R451I	.	.	.
NHLRC2	374354	broad.mit.edu	36	10	115653303	115653303	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198514	exon9	c.A1522C	p.N508H	.	.	.
ADRB1	153	broad.mit.edu	36	10	115794393	115794393	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000684	exon1	c.C512T	p.T171M	.	.	.
C10orf118	55088	broad.mit.edu	36	10	115885697	115885697	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018017	exon9	c.A1455C	p.E485D	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115937779	115937779	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198795	exon2	c.T199G	p.F67V	.	.	.
VWA2	340706	broad.mit.edu	36	10	116027787	116027787	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198496	exon7	c.G691A	p.A231T	.	.	.
FAM160B1	57700	broad.mit.edu	36	10	116580628	116580628	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020940	exon2	c.G73T	p.D25Y	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117051466	117051466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207303	exon17	c.G2741A	p.R914Q	.	.	.
PNLIPRP1	5407	broad.mit.edu	36	10	118349603	118349603	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006229	exon9	c.A869G	p.E290G	.	.	.
KIAA1598	57698	broad.mit.edu	36	10	118701502	118701502	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018330	exon6	c.C442T	p.R148X	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959736	118959736	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181840	exon3	c.A1091G	p.D364G	.	.	.
UPF2	26019	broad.mit.edu	36	10	12034158	12034158	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080599	exon15	c.C2947T	p.L983L	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120807723	120807723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003750	exon12	c.G1712A	p.R571H	.	.	.
RGS10	6001	broad.mit.edu	36	10	121249665	121249665	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005339	exon5	c.C496T	p.P166S	.	.	.
C10orf119	79892	broad.mit.edu	36	10	121597154	121597154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024834	exon8	c.C788T	p.S263F	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12176147	12176147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018706	exon7	c.G1229A	p.R410Q	.	.	.
HTRA1	5654	broad.mit.edu	36	10	124258164	124258164	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002775	exon6	c.C1008T	p.D336D	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124329134	124329134	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007329	exon10	c.C730T	p.R244X	.	.	.
C10orf88	80007	broad.mit.edu	36	10	124682098	124682098	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024942	exon6	c.G1173T	p.K391N	.	.	.
ACADSB	36	broad.mit.edu	36	10	124800612	124800612	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001609	exon9	c.A1048G	p.T350A	.	.	.
ACADSB	36	broad.mit.edu	36	10	124802596	124802596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001609	exon10	c.C1158T	p.I386I	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125641004	125641004	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198148	exon1	c.C162T	p.L54L	.	.	.
CHST15	51363	broad.mit.edu	36	10	125794274	125794274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon3	c.G698A	p.R233H	.	.	.
CHST15	51363	broad.mit.edu	36	10	125795501	125795501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon2	c.G218A	p.R73H	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127407938	127407938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015608	exon7	c.C814T	p.R272W	.	.	.
MMP21	118856	broad.mit.edu	36	10	127448916	127448916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147191	exon5	c.G1214T	p.R405I	.	.	.
DHX32	55760	broad.mit.edu	36	10	127559231	127559231	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018180	exon1	c.T153C	p.R51R	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127724656	127724656	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021641	exon17	c.C1962A	p.V654V	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128798575	128798575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001380	exon25	c.G2527A	p.E843K	.	.	.
MKI67	4288	broad.mit.edu	36	10	129796140	129796140	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G2874A	p.Q958Q	.	.	.
MKI67	4288	broad.mit.edu	36	10	129796291	129796291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G2723A	p.R908Q	.	.	.
MKI67	4288	broad.mit.edu	36	10	129803332	129803332	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002417	exon7	c.T1330G	p.F444V	.	.	.
GLRX3	10539	broad.mit.edu	36	10	131849114	131849114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199868	exon4	c.G341A	p.R114Q	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132786602	132786602	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon11	c.G1561T	p.E521X	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132805121	132805121	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon9	c.G1326A	p.P442P	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133799475	133799475	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105521	exon5	c.A1021C	p.N341H	.	.	.
HSPA14	51182	broad.mit.edu	36	10	14952641	14952641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016299	exon13	c.C1420T	p.R474C	.	.	.
FAM171A1	221061	broad.mit.edu	36	10	15296423	15296423	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010924	exon8	c.G1170A	p.T390T	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15766025	15766025	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003638	exon4	c.C552A	p.F184L	.	.	.
PTER	9317	broad.mit.edu	36	10	16587121	16587121	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001484	exon5	c.C795T	p.L265L	.	.	.
CUBN	8029	broad.mit.edu	36	10	17167708	17167708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon16	c.C2004A	p.F668L	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17243528	17243528	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004412	exon5	c.C349A	p.L117I	.	.	.
SLC39A12	221074	broad.mit.edu	36	10	18282275	18282275	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145195	exon2	c.T64G	p.F22V	.	.	.
NEBL	10529	broad.mit.edu	36	10	21114838	21114838	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173484	exon7	c.C655T	p.R219X	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844732	21844732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207371	exon4	c.G2026A	p.D676N	.	.	.
PTF1A	256297	broad.mit.edu	36	10	23522754	23522754	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178161	exon2	c.C900T	p.V300V	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24762059	24762059	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon4	c.A683G	p.E228G	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24872774	24872774	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon19	c.A4569G	p.P1523P	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742573	27742573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034842	exon1	c.G613A	p.E205K	.	.	.
WAC	51322	broad.mit.edu	36	10	28946643	28946643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_100486	exon12	c.G1489A	p.E497K	.	.	.
BAMBI	25805	broad.mit.edu	36	10	29011222	29011222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012342	exon3	c.G669T	p.E223D	.	.	.
SVIL	6840	broad.mit.edu	36	10	29880048	29880048	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon8	c.G311T	p.R104I	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30356638	30356638	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.C2445A	p.L815L	.	.	.
PARD3	56288	broad.mit.edu	36	10	34728316	34728316	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184787	exon7	c.G838A	p.D280N	.	.	.
GJD4	219770	broad.mit.edu	36	10	35937063	35937063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153368	exon2	c.G616A	p.A206T	.	.	.
ZNF248	57209	broad.mit.edu	36	10	38161357	38161357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021045	exon6	c.C932T	p.A311V	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42447388	42447388	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006955	exon4	c.T245G	p.F82C	.	.	.
BMS1	9790	broad.mit.edu	36	10	42612957	42612957	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon11	c.G2069A	p.R690Q	.	.	.
CSGALNACT2	55454	broad.mit.edu	36	10	42982515	42982515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018590	exon6	c.C1217T	p.A406V	.	.	.
ZNF485	220992	broad.mit.edu	36	10	43432449	43432449	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145312	exon5	c.A952C	p.R318R	.	.	.
ZNF32	7580	broad.mit.edu	36	10	43459884	43459884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006973	exon3	c.C442T	p.L148F	.	.	.
ALOX5	240	broad.mit.edu	36	10	45198104	45198104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000698	exon2	c.C318T	p.G106G	.	.	.
ALOX5	240	broad.mit.edu	36	10	45256014	45256014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000698	exon8	c.G1112A	p.R371Q	.	.	.
PPYR1	5540	broad.mit.edu	36	10	46507118	46507118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005972	exon3	c.G329A	p.G110E	.	.	.
LRRC18	474354	broad.mit.edu	36	10	49792069	49792069	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006939	exon1	c.T138G	p.I46M	.	.	.
AKR1C2	1646	broad.mit.edu	36	10	5033872	5033872	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205845	exon3	c.T86C	p.V29A	.	.	.
SGMS1	259230	broad.mit.edu	36	10	51736991	51736991	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147156	exon11	c.C1159T	p.R387X	.	.	.
A1CF	29974	broad.mit.edu	36	10	52250389	52250389	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198818	exon9	c.C796T	p.R266X	.	.	.
A1CF	29974	broad.mit.edu	36	10	52289656	52289656	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198818	exon4	c.A51C	p.E17D	.	.	.
NET1	10276	broad.mit.edu	36	10	5484322	5484322	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005863	exon3	c.C203A	p.S68X	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55261181	55261181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon29	c.G3991A	p.E1331K	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55496646	55496646	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon17	c.A1986G	p.S662S	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55747179	55747179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon7	c.G623A	p.R208Q	.	.	.
ANKRD16	54522	broad.mit.edu	36	10	5969970	5969970	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009943	exon2	c.C381T	p.G127G	.	.	.
FBXO18	84893	broad.mit.edu	36	10	6005665	6005665	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032807	exon17	c.C2551T	p.Q851X	.	.	.
BICC1	80114	broad.mit.edu	36	10	60230692	60230692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080512	exon14	c.G1895A	p.R632Q	.	.	.
PHYHIPL	84457	broad.mit.edu	36	10	60668470	60668470	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143774	exon4	c.C517T	p.R173X	.	.	.
SLC16A9	220963	broad.mit.edu	36	10	61084133	61084133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194298	exon5	c.G657T	p.K219N	.	.	.
ANK3	288	broad.mit.edu	36	10	61502033	61502033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.C8612T	p.S2871L	.	.	.
ANK3	288	broad.mit.edu	36	10	61502293	61502293	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.T8352G	p.F2784L	.	.	.
ANK3	288	broad.mit.edu	36	10	61504664	61504664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.C5981T	p.S1994L	.	.	.
TMEM26	219623	broad.mit.edu	36	10	62840308	62840308	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178505	exon6	c.C885T	p.L295L	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64644022	64644022	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004241	exon5	c.A1254C	p.K418N	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64649740	64649740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032776	exon4	c.G457A	p.D153N	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	67710279	67710279	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013266	exon13	c.C1839A	p.I613I	.	.	.
MYPN	84665	broad.mit.edu	36	10	69629312	69629312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032578	exon17	c.C3467A	p.S1156Y	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70178922	70178922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018237	exon9	c.C850T	p.R284C	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70179024	70179024	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018237	exon9	c.C952T	p.R318X	.	.	.
STOX1	219736	broad.mit.edu	36	10	70315945	70315945	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152709	exon3	c.G2387T	p.R796I	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70687141	70687141	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025130	exon14	c.T1985C	p.M662T	.	.	.
HK1	3098	broad.mit.edu	36	10	70725412	70725412	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033498	exon4	c.A45G	p.K15K	.	.	.
H2AFY2	55506	broad.mit.edu	36	10	71538831	71538831	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018649	exon8	c.T815G	p.F272C	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72183727	72183727	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080722	exon19	c.A2895G	p.R965R	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7284465	7284465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon13	c.C1470T	p.V490V	.	.	.
P4HA1	5033	broad.mit.edu	36	10	74476713	74476713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142595	exon9	c.C1053T	p.I351I	.	.	.
ECD	11319	broad.mit.edu	36	10	74567795	74567795	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135753	exon11	c.T1332G	p.S444S	.	.	.
TTC18	118491	broad.mit.edu	36	10	74707104	74707104	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145170	exon22	c.C2630A	p.S877X	.	.	.
SYNPO2L	79933	broad.mit.edu	36	10	75078613	75078613	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024875	exon2	c.A131C	p.K44T	.	.	.
C10orf11	83938	broad.mit.edu	36	10	77465774	77465774	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032024	exon2	c.C50A	p.S17X	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78317173	78317173	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161353	exon28	c.T3517C	p.S1173P	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78514412	78514412	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161353	exon12	c.G1512A	p.S504S	.	.	.
KIN	22944	broad.mit.edu	36	10	7865114	7865114	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012311	exon2	c.T145C	p.S49P	.	.	.
DYDC1	143241	broad.mit.edu	36	10	82092037	82092037	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138812	exon5	c.G310T	p.E104X	.	.	.
LARP4B	23185	broad.mit.edu	36	10	853778	853778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015155	exon14	c.G1582A	p.E528K	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86249669	86249669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018999	exon10	c.G2384A	p.R795Q	.	.	.
GRID1	2894	broad.mit.edu	36	10	87474282	87474282	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon11	c.C1665T	p.F555F	.	.	.
MMRN2	79812	broad.mit.edu	36	10	88693269	88693269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024756	exon6	c.G1252A	p.E418K	.	.	.
FAM22A	728118	broad.mit.edu	36	10	88978134	88978134	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099338	exon2	c.G517T	p.G173C	.	.	.
CH25H	9023	broad.mit.edu	36	10	90956613	90956613	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003956	exon1	c.C417A	p.F139L	.	.	.
IFIT3	3437	broad.mit.edu	36	10	91088772	91088772	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001549	exon2	c.T380G	p.F127C	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91469412	91469412	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon13	c.A1691C	p.N564T	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91523766	91523766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon33	c.G5324A	p.R1775Q	.	.	.
HTR7	3363	broad.mit.edu	36	10	92606985	92606985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon1	c.G424A	p.D142N	.	.	.
RPP30	10556	broad.mit.edu	36	10	92635567	92635567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006413	exon6	c.G361A	p.D121N	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93210235	93210235	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182765	exon3	c.G340A	p.E114K	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93605366	93605366	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025235	exon23	c.C2929T	p.R977X	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93743575	93743575	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003972	exon22	c.A3190C	p.N1064H	.	.	.
IDE	3416	broad.mit.edu	36	10	94204243	94204243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004969	exon25	c.C2998T	p.R1000C	.	.	.
IDE	3416	broad.mit.edu	36	10	94258577	94258577	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004969	exon7	c.A948G	p.T316T	.	.	.
IDE	3416	broad.mit.edu	36	10	94281624	94281624	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004969	exon4	c.C522T	p.F174F	.	.	.
KIF11	3832	broad.mit.edu	36	10	94398039	94398039	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004523	exon19	c.T2638G	p.F880V	.	.	.
MYOF	26509	broad.mit.edu	36	10	95060315	95060315	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon51	c.G5926A	p.E1976K	.	.	.
MYOF	26509	broad.mit.edu	36	10	95097478	95097478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon36	c.G4096A	p.D1366N	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95371712	95371712	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006204	exon4	c.G757T	p.E253X	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95385317	95385317	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006204	exon10	c.G1343T	p.R448I	.	.	.
CYP2C19	1557	broad.mit.edu	36	10	96592612	96592612	+	Silent	SNP	C	A	A	rs3758580	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000769	exon7	c.C990A	p.V330V	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96691641	96691641	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000771	exon2	c.T205G	p.F69V	.	.	.
CYP2C8	1558	broad.mit.edu	36	10	96787050	96787050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000770	exon9	c.G1298A	p.R433Q	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97909905	97909905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014803	exon6	c.G3836A	p.R1279Q	.	.	.
DNTT	1791	broad.mit.edu	36	10	98069103	98069103	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004088	exon3	c.G473T	p.R158I	.	.	.
DNTT	1791	broad.mit.edu	36	10	98082178	98082178	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004088	exon9	c.T1194C	p.D398D	.	.	.
DNTT	1791	broad.mit.edu	36	10	98082259	98082259	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004088	exon9	c.G1275T	p.K425N	.	.	.
DNTT	1791	broad.mit.edu	36	10	98085711	98085711	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004088	exon10	c.A1433G	p.D478G	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98699036	98699036	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032440	exon6	c.G232A	p.E78K	.	.	.
MMS19	64210	broad.mit.edu	36	10	99217309	99217309	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022362	exon14	c.C1240A	p.L414I	.	.	.
SFRP5	6425	broad.mit.edu	36	10	99517596	99517596	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003015	exon3	c.C619T	p.R207C	.	.	.
C10orf28	27291	broad.mit.edu	36	10	99958518	99958518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014472	exon4	c.G657A	p.E219E	.	.	.
FAT3	120114	broad.mit.edu	36	11	91725312	91725313	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon1	c.386_387insA	p.V129fs	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100849667	100849667	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004621	exon7	c.C1792A	p.L598I	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101276439	101276439	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178127	exon7	c.G593T	p.R198I	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101281755	101281755	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178127	exon4	c.G275T	p.R92I	.	.	.
MMP20	9313	broad.mit.edu	36	11	101953310	101953310	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004771	exon10	c.A1409G	p.D470G	.	.	.
MMP27	64066	broad.mit.edu	36	11	102070985	102070985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022122	exon7	c.C956T	p.A319V	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102596607	102596607	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon57	c.G8992A	p.E2998K	.	.	.
CASP5	838	broad.mit.edu	36	11	104379225	104379225	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136112	exon4	c.A568C	p.K190Q	.	.	.
LYVE1	10894	broad.mit.edu	36	11	10537309	10537309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006691	exon6	c.G894T	p.K298N	.	.	.
KIAA1826	84437	broad.mit.edu	36	11	105386405	105386405	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032424	exon2	c.G450A	p.P150P	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105434873	105434873	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152433	exon2	c.C162A	p.F54L	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106315601	106315601	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon4	c.A1001G	p.D334G	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106792191	106792191	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152434	exon10	c.A1571C	p.K524T	.	.	.
ALKBH8	91801	broad.mit.edu	36	11	106932759	106932759	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138775	exon3	c.G310T	p.E104X	.	.	.
ATM	472	broad.mit.edu	36	11	107708703	107708703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000051	exon53	c.G7793A	p.R2598Q	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10780515	10780515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon12	c.G1040A	p.R347K	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107887225	107887225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015065	exon6	c.G4219A	p.E1407K	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109528867	109528867	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon3	c.G787T	p.E263X	.	.	.
RDX	5962	broad.mit.edu	36	11	109609396	109609396	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002906	exon13	c.G1363T	p.D455Y	.	.	.
LAYN	143903	broad.mit.edu	36	11	110936239	110936239	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178834	exon7	c.A971C	p.D324A	.	.	.
DIXDC1	85458	broad.mit.edu	36	11	111340562	111340562	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037954	exon2	c.G140A	p.R47Q	.	.	.
ANKK1	255239	broad.mit.edu	36	11	112770925	112770925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178510	exon3	c.C545T	p.S182L	.	.	.
USP28	57646	broad.mit.edu	36	11	113177536	113177536	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020886	exon24	c.G2937T	p.M979I	.	.	.
BUD13	84811	broad.mit.edu	36	11	116138826	116138826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032725	exon4	c.G689A	p.R230Q	.	.	.
ZNF259	8882	broad.mit.edu	36	11	116161783	116161783	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003904	exon5	c.G521T	p.R174I	.	.	.
TAGLN	6876	broad.mit.edu	36	11	116578976	116578976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003186	exon2	c.G37A	p.E13K	.	.	.
RNF214	257160	broad.mit.edu	36	11	116656118	116656118	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077239	exon8	c.A1078G	p.K360E	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116856420	116856420	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon14	c.C2913T	p.F971F	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117279982	117279982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077263	exon11	c.G1426A	p.D476N	.	.	.
SCN2B	6327	broad.mit.edu	36	11	117552331	117552331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004588	exon1	c.G26A	p.R9H	.	.	.
MLL	4297	broad.mit.edu	36	11	117878978	117878978	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon27	c.T7152A	p.D2384E	.	.	.
DDX6	1656	broad.mit.edu	36	11	118131394	118131394	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004397	exon12	c.A1203C	p.Q401H	.	.	.
CXCR5	643	broad.mit.edu	36	11	118270452	118270452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032966	exon1	c.G854A	p.R285H	.	.	.
CCDC84	338657	broad.mit.edu	36	11	118388174	118388174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198489	exon7	c.G684A	p.Q228Q	.	.	.
SLC37A4	2542	broad.mit.edu	36	11	118401972	118401972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164278	exon8	c.G900A	p.S300S	.	.	.
USP47	55031	broad.mit.edu	36	11	11920808	11920808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017944	exon19	c.C2460T	p.I820I	.	.	.
POU2F3	25833	broad.mit.edu	36	11	119622394	119622394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014352	exon2	c.G55A	p.D19N	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119851375	119851375	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon32	c.T3169C	p.F1057L	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120207886	120207886	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon5	c.C627T	p.D209D	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120338440	120338440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon16	c.C2106T	p.F702F	.	.	.
SORL1	6653	broad.mit.edu	36	11	120854052	120854052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon3	c.G418A	p.D140N	.	.	.
ZNF202	7753	broad.mit.edu	36	11	123106600	123106600	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003455	exon4	c.A207G	p.E69E	.	.	.
OR6X1	390260	broad.mit.edu	36	11	123130112	123130112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005188	exon1	c.G325A	p.E109K	.	.	.
OR6X1	390260	broad.mit.edu	36	11	123130260	123130260	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005188	exon1	c.C177A	p.F59L	.	.	.
OR8D4	338662	broad.mit.edu	36	11	123282363	123282363	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005197	exon1	c.C15A	p.N5K	.	.	.
OR4D5	219875	broad.mit.edu	36	11	123315809	123315809	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001965	exon1	c.T276C	p.I92I	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123319590	123319590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005187	exon1	c.C166T	p.H56Y	.	.	.
MICALCL	84953	broad.mit.edu	36	11	12332954	12332954	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032867	exon8	c.A1877C	p.K626T	.	.	.
OR10G7	390265	broad.mit.edu	36	11	123414337	123414337	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004463	exon1	c.C582T	p.N194N	.	.	.
OR8B2	26595	broad.mit.edu	36	11	123758129	123758129	+	Silent	SNP	G	A	A	rs2320234	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005468	exon1	c.C321T	p.F107F	.	.	.
SIAE	54414	broad.mit.edu	36	11	124035853	124035853	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170601	exon3	c.G286A	p.E96K	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269107	124269107	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019055	exon9	c.C1363T	p.P455S	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269374	124269374	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019055	exon8	c.C1251T	p.C417C	.	.	.
SLC37A2	219855	broad.mit.edu	36	11	124454242	124454242	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145290	exon5	c.G339A	p.P113P	.	.	.
CDON	50937	broad.mit.edu	36	11	125369453	125369453	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon14	c.T2586G	p.F862L	.	.	.
CDON	50937	broad.mit.edu	36	11	125398527	125398527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon2	c.C55T	p.L19L	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129290082	129290082	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020228	exon18	c.C2580T	p.F860F	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129310236	129310236	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020228	exon9	c.C1127A	p.S376Y	.	.	.
APLP2	334	broad.mit.edu	36	11	129516675	129516675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001642	exon16	c.C2032T	p.R678W	.	.	.
ADAMTS8	11095	broad.mit.edu	36	11	129781132	129781132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007037	exon9	c.C2201T	p.A734V	.	.	.
ADAMTS8	11095	broad.mit.edu	36	11	129783715	129783715	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007037	exon8	c.A1953C	p.E651D	.	.	.
NTM	50863	broad.mit.edu	36	11	131685233	131685233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144058	exon5	c.G679A	p.E227K	.	.	.
ARNTL	406	broad.mit.edu	36	11	13336599	13336599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030273	exon8	c.G135T	p.M45I	.	.	.
VPS26B	112936	broad.mit.edu	36	11	133600340	133600340	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052875	exon1	c.C114T	p.F38F	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13399805	13399805	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032320	exon3	c.T258C	p.C86C	.	.	.
PTH	5741	broad.mit.edu	36	11	13470710	13470710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000315	exon3	c.C166T	p.R56C	.	.	.
RRAS2	22800	broad.mit.edu	36	11	14272652	14272652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177315	exon4	c.C118T	p.R40C	.	.	.
COPB1	1315	broad.mit.edu	36	11	14457776	14457776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016451	exon11	c.C1273T	p.R425C	.	.	.
CYP2R1	120227	broad.mit.edu	36	11	14858825	14858825	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024514	exon3	c.C433T	p.R145X	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17439778	17439778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon5	c.C750T	p.I250I	.	.	.
USH1C	10083	broad.mit.edu	36	11	17501583	17501583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153676	exon10	c.G778A	p.E260K	.	.	.
USH1C	10083	broad.mit.edu	36	11	17505378	17505378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153676	exon5	c.G464A	p.R155Q	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18593768	18593768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194285	exon3	c.G629A	p.R210Q	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912301	18912301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147199	exon1	c.C607A	p.L203I	.	.	.
E2F8	79733	broad.mit.edu	36	11	19203701	19203701	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024680	exon12	c.T2064G	p.V688V	.	.	.
NAV2	89797	broad.mit.edu	36	11	20023786	20023786	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon14	c.T3704G	p.L1235R	.	.	.
NAV2	89797	broad.mit.edu	36	11	20069042	20069042	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon27	c.T5362C	p.L1788L	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20582489	20582489	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004211	exon3	c.G622A	p.A208T	.	.	.
NELL1	4745	broad.mit.edu	36	11	21512588	21512588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006157	exon16	c.G1738A	p.G580S	.	.	.
GAS2	2620	broad.mit.edu	36	11	22704460	22704460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143830	exon4	c.G314A	p.G105D	.	.	.
MUC15	143662	broad.mit.edu	36	11	26543801	26543801	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135092	exon3	c.A262C	p.N88H	.	.	.
ANO3	63982	broad.mit.edu	36	11	26625849	26625849	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031418	exon24	c.C2446A	p.L816I	.	.	.
LGR4	55366	broad.mit.edu	36	11	27346072	27346072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018490	exon18	c.C2774T	p.A925V	.	.	.
LGR4	55366	broad.mit.edu	36	11	27354491	27354491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018490	exon13	c.C1112T	p.S371F	.	.	.
LGR4	55366	broad.mit.edu	36	11	27360354	27360354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018490	exon7	c.G715A	p.E239K	.	.	.
QSER1	79832	broad.mit.edu	36	11	32911973	32911973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076786	exon4	c.C2206A	p.L736I	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33521011	33521011	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012194	exon1	c.T435A	p.N145K	.	.	.
NAT10	55226	broad.mit.edu	36	11	34086416	34086416	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024662	exon2	c.G68T	p.R23I	.	.	.
CAT	847	broad.mit.edu	36	11	34430230	34430230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001752	exon4	c.G380A	p.R127Q	.	.	.
RAG1	5896	broad.mit.edu	36	11	36552960	36552960	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000448	exon2	c.G1530A	p.E510E	.	.	.
RAG1	5896	broad.mit.edu	36	11	36553423	36553423	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000448	exon2	c.G1993T	p.E665X	.	.	.
C11orf74	119710	broad.mit.edu	36	11	36637184	36637184	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138787	exon6	c.G538T	p.E180X	.	.	.
NUP98	4928	broad.mit.edu	36	11	3702949	3702949	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005387	exon15	c.A1858C	p.N620H	.	.	.
TTC17	55761	broad.mit.edu	36	11	43376171	43376171	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018259	exon8	c.A990G	p.Q330Q	.	.	.
OR52K2	119774	broad.mit.edu	36	11	4428000	4428000	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005172	exon1	c.C855T	p.F285F	.	.	.
ZNF408	79797	broad.mit.edu	36	11	46683909	46683909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024741	exon5	c.G2083A	p.A695T	.	.	.
MADD	8567	broad.mit.edu	36	11	47264642	47264642	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003682	exon15	c.G2634A	p.T878T	.	.	.
MYBPC3	4607	broad.mit.edu	36	11	47329493	47329493	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000256	exon2	c.C165T	p.Y55Y	.	.	.
PSMC3	5702	broad.mit.edu	36	11	47402749	47402749	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002804	exon4	c.A375C	p.K125N	.	.	.
PTPMT1	114971	broad.mit.edu	36	11	47549751	47549751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175732	exon4	c.G600T	p.K200N	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47668957	47668957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024783	exon9	c.G878A	p.R293Q	.	.	.
OR51T1	401665	broad.mit.edu	36	11	4860403	4860403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004759	exon1	c.G779A	p.R260Q	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892799	4892799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005238	exon1	c.C671T	p.A224V	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892846	4892846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005238	exon1	c.C624T	p.I208I	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4893298	4893298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005238	exon1	c.C172T	p.R58C	.	.	.
OR51A4	401666	broad.mit.edu	36	11	4924176	4924176	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005329	exon1	c.C731A	p.S244X	.	.	.
OR51L1	119682	broad.mit.edu	36	11	4977291	4977291	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004755	exon1	c.A503C	p.Y168S	.	.	.
OR4C46	119749	broad.mit.edu	36	11	51372161	51372161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004703	exon1	c.G304A	p.E102K	.	.	.
OR51M1	390059	broad.mit.edu	36	11	5367903	5367903	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004756	exon1	c.C699A	p.I233I	.	.	.
OR51Q1	390061	broad.mit.edu	36	11	5400552	5400552	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004757	exon1	c.C546T	p.L182L	.	.	.
OR4A16	81327	broad.mit.edu	36	11	54867942	54867942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005274	exon1	c.G690T	p.E230D	.	.	.
OR4P4	81300	broad.mit.edu	36	11	55162530	55162530	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004124	exon1	c.T121C	p.L41L	.	.	.
OR5D13	390142	broad.mit.edu	36	11	55298181	55298181	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001967	exon1	c.G692A	p.R231Q	.	.	.
OR10AG1	282770	broad.mit.edu	36	11	55491657	55491657	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005491	exon1	c.G859T	p.D287Y	.	.	.
OR8H2	390151	broad.mit.edu	36	11	55629668	55629668	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005200	exon1	c.A574G	p.T192A	.	.	.
OR5T3	390154	broad.mit.edu	36	11	55776619	55776619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004747	exon1	c.C368T	p.S123L	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814983	55814983	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005199	exon1	c.G132A	p.G44G	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870444	55870444	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002907	exon1	c.C354A	p.L118L	.	.	.
OR5R1	219479	broad.mit.edu	36	11	55941355	55941355	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004744	exon1	c.A930C	p.E310D	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55993749	55993749	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004742	exon1	c.G801A	p.E267E	.	.	.
OR5M11	219487	broad.mit.edu	36	11	56066922	56066922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005245	exon1	c.C388T	p.R130C	.	.	.
OR5AP2	338675	broad.mit.edu	36	11	56165582	56165582	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002925	exon1	c.A910C	p.K304Q	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5620254	5620254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003827	exon6	c.G816T	p.K272N	.	.	.
RTN4RL2	349667	broad.mit.edu	36	11	56991844	56991844	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178570	exon2	c.G218A	p.R73H	.	.	.
SERPING1	710	broad.mit.edu	36	11	57138388	57138388	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000062	exon8	c.T1261G	p.F421V	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57327746	57327746	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001331	exon8	c.G1498T	p.E500X	.	.	.
OR9I1	219954	broad.mit.edu	36	11	57642598	57642598	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005211	exon1	c.G895T	p.D299Y	.	.	.
OR9I1	219954	broad.mit.edu	36	11	57643113	57643113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005211	exon1	c.G380A	p.R127H	.	.	.
OR9Q2	219957	broad.mit.edu	36	11	57715416	57715416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005283	exon1	c.G878A	p.R293K	.	.	.
OR5B17	219965	broad.mit.edu	36	11	57882193	57882193	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005489	exon1	c.C926T	p.S309F	.	.	.
OR5B12	390191	broad.mit.edu	36	11	57963934	57963934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004733	exon1	c.C267A	p.F89L	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862469	5862469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005165	exon1	c.G371A	p.R124H	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58649355	58649355	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142703	exon3	c.G1119A	p.P373P	.	.	.
OR4D6	219983	broad.mit.edu	36	11	58981068	58981068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004708	exon1	c.C59T	p.S20F	.	.	.
OR4D11	219986	broad.mit.edu	36	11	59027784	59027784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004706	exon1	c.C160T	p.R54C	.	.	.
OR56A3	390083	broad.mit.edu	36	11	5925612	5925612	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003443	exon1	c.A460G	p.T154A	.	.	.
STX3	6809	broad.mit.edu	36	11	59312988	59312988	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178040	exon4	c.A281C	p.K94T	.	.	.
GIF	2694	broad.mit.edu	36	11	59368052	59368052	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005142	exon2	c.G132T	p.E44D	.	.	.
MS4A2	2206	broad.mit.edu	36	11	59618044	59618044	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000139	exon6	c.T569C	p.I190T	.	.	.
MS4A8B	83661	broad.mit.edu	36	11	60224917	60224917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031457	exon2	c.C8T	p.S3L	.	.	.
MS4A8B	83661	broad.mit.edu	36	11	60239084	60239084	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031457	exon6	c.G549A	p.A183A	.	.	.
ZP1	22917	broad.mit.edu	36	11	60391701	60391701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207341	exon1	c.G91A	p.D31N	.	.	.
PRPF19	27339	broad.mit.edu	36	11	60415288	60415288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014502	exon16	c.G1441A	p.V481M	.	.	.
VPS37C	55048	broad.mit.edu	36	11	60656098	60656098	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017966	exon5	c.T838C	p.S280P	.	.	.
VWCE	220001	broad.mit.edu	36	11	60788619	60788619	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152718	exon19	c.G2146T	p.E716X	.	.	.
OR52B2	255725	broad.mit.edu	36	11	6147849	6147849	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004052	exon1	c.C284A	p.A95D	.	.	.
TAF6L	10629	broad.mit.edu	36	11	62305965	62305965	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006473	exon7	c.G555A	p.T185T	.	.	.
SLC3A2	6520	broad.mit.edu	36	11	62409253	62409253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002394	exon9	c.G1150A	p.D384N	.	.	.
SLC22A8	9376	broad.mit.edu	36	11	62538859	62538859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184732	exon2	c.C148T	p.R50C	.	.	.
SLC22A9	114571	broad.mit.edu	36	11	62898074	62898074	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080866	exon4	c.T794C	p.V265A	.	.	.
RTN3	10313	broad.mit.edu	36	11	63243508	63243508	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201428	exon2	c.G901T	p.A301S	.	.	.
NRXN2	9379	broad.mit.edu	36	11	64166649	64166649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138734	exon1	c.G203A	p.S68N	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64265017	64265017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon5	c.G350A	p.S117N	.	.	.
TRIM3	10612	broad.mit.edu	36	11	6433931	6433931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006458	exon8	c.G1480A	p.A494T	.	.	.
ARFIP2	23647	broad.mit.edu	36	11	6455625	6455625	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012402	exon7	c.C769T	p.R257X	.	.	.
PCNXL3	399909	broad.mit.edu	36	11	65147565	65147565	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032223	exon12	c.C2385T	p.F795F	.	.	.
CTSW	1521	broad.mit.edu	36	11	65405455	65405455	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001335	exon3	c.G174A	p.E58E	.	.	.
CATSPER1	117144	broad.mit.edu	36	11	65550101	65550101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053054	exon1	c.G326A	p.R109H	.	.	.
BRMS1	25855	broad.mit.edu	36	11	65865049	65865049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015399	exon5	c.G403A	p.E135K	.	.	.
BBS1	582	broad.mit.edu	36	11	66038723	66038723	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024649	exon4	c.G430T	p.E144X	.	.	.
ZDHHC24	254359	broad.mit.edu	36	11	66067994	66067994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207340	exon2	c.C316T	p.R106C	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6617860	6617860	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon2	c.T1561C	p.F521L	.	.	.
ALDH3B1	221	broad.mit.edu	36	11	67546722	67546722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000694	exon8	c.G1031A	p.R344H	.	.	.
OR2AG1	144125	broad.mit.edu	36	11	6762962	6762962	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004489	exon1	c.A118G	p.I40V	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68072237	68072237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164164	exon6	c.G541A	p.D181N	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68100058	68100058	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164164	exon14	c.G1363T	p.E455X	.	.	.
OR10A5	144124	broad.mit.edu	36	11	6824374	6824374	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178168	exon1	c.T885C	p.N295N	.	.	.
OR2D2	120776	broad.mit.edu	36	11	6869673	6869673	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003700	exon1	c.T635G	p.F212C	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6899057	6899057	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004684	exon1	c.C249A	p.S83S	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6899755	6899755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004684	exon1	c.C947T	p.A316V	.	.	.
ZNF215	7762	broad.mit.edu	36	11	6919444	6919444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013250	exon4	c.G467A	p.R156Q	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69796179	69796179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003626	exon2	c.G253A	p.A85T	.	.	.
FOLR1	2348	broad.mit.edu	36	11	71580908	71580908	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016724	exon3	c.T43C	p.W15R	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73492037	73492037	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon14	c.T2367G	p.N789K	.	.	.
POLD3	10714	broad.mit.edu	36	11	74007470	74007470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006591	exon6	c.G633A	p.T211T	.	.	.
DGAT2	84649	broad.mit.edu	36	11	75189144	75189144	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032564	exon8	c.C1110T	p.F370F	.	.	.
UVRAG	7405	broad.mit.edu	36	11	75240613	75240613	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003369	exon2	c.A155G	p.N52S	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75934546	75934546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020193	exon20	c.C3331T	p.R1111C	.	.	.
PAK1	5058	broad.mit.edu	36	11	76781134	76781134	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002576	exon2	c.G80A	p.G27D	.	.	.
KCTD14	65987	broad.mit.edu	36	11	77405331	77405331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023930	exon2	c.G724A	p.E242K	.	.	.
ALG8	79053	broad.mit.edu	36	11	77502648	77502648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007027	exon7	c.C709T	p.R237C	.	.	.
OR5P2	120065	broad.mit.edu	36	11	7774213	7774213	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153444	exon1	c.A853G	p.I285V	.	.	.
NARS2	79731	broad.mit.edu	36	11	77948250	77948250	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024678	exon5	c.G577T	p.E193X	.	.	.
NARS2	79731	broad.mit.edu	36	11	77960118	77960118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024678	exon2	c.G161A	p.R54Q	.	.	.
PCF11	51585	broad.mit.edu	36	11	82556172	82556172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon7	c.G2069A	p.R690Q	.	.	.
CCDC89	220388	broad.mit.edu	36	11	85074300	85074300	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152723	exon1	c.G522A	p.A174A	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85113412	85113412	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206927	exon1	c.A1736C	p.E579A	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85113478	85113478	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206927	exon1	c.C1670A	p.S557Y	.	.	.
PICALM	8301	broad.mit.edu	36	11	85400983	85400983	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007166	exon6	c.T647G	p.I216S	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85808692	85808692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021827	exon13	c.G1496A	p.R499K	.	.	.
CTSC	1075	broad.mit.edu	36	11	87673355	87673355	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001814	exon5	c.C748T	p.R250X	.	.	.
GRM5	2915	broad.mit.edu	36	11	87940159	87940159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon8	c.G2340A	p.T780T	.	.	.
TYR	7299	broad.mit.edu	36	11	88564023	88564023	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000372	exon2	c.C825T	p.V275V	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89069463	89069463	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153696	exon13	c.G1061T	p.R354I	.	.	.
TRIM49	57093	broad.mit.edu	36	11	89177262	89177262	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020358	exon3	c.C24A	p.V8V	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89535823	89535823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005467	exon9	c.G1048A	p.G350R	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89548822	89548822	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005467	exon15	c.G1537A	p.A513T	.	.	.
NRIP3	56675	broad.mit.edu	36	11	8965695	8965695	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020645	exon3	c.C398A	p.S133Y	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9008961	9008961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020974	exon17	c.G2090A	p.R697Q	.	.	.
FAT3	120114	broad.mit.edu	36	11	91725598	91725598	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.G672T	p.K224N	.	.	.
FAT3	120114	broad.mit.edu	36	11	92170786	92170786	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon9	c.T4959G	p.A1653A	.	.	.
SLC36A4	120103	broad.mit.edu	36	11	92527028	92527028	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152313	exon10	c.C1101A	p.F367L	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93484701	93484701	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon20	c.C3473T	p.A1158V	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94172991	94172991	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130847	exon3	c.G987A	p.E329E	.	.	.
ENDOD1	23052	broad.mit.edu	36	11	94501729	94501729	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015036	exon2	c.A841C	p.K281Q	.	.	.
JRKL	8690	broad.mit.edu	36	11	95764866	95764866	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003772	exon1	c.G1405T	p.E469X	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100084502	100084502	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145913	exon12	c.A1427G	p.D476G	.	.	.
UTP20	27340	broad.mit.edu	36	12	100208134	100208134	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon7	c.T686G	p.F229C	.	.	.
UTP20	27340	broad.mit.edu	36	12	100229699	100229699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon20	c.C2303T	p.T768M	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100562587	100562587	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon12	c.C847A	p.L283I	.	.	.
CLEC12B	387837	broad.mit.edu	36	12	10056727	10056727	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129998	exon2	c.G168A	p.G56G	.	.	.
CLEC12B	387837	broad.mit.edu	36	12	10059561	10059561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129998	exon5	c.C648A	p.F216L	.	.	.
SYCP3	50511	broad.mit.edu	36	12	100652903	100652903	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177948	exon5	c.A286G	p.T96A	.	.	.
PMCH	5367	broad.mit.edu	36	12	101115573	101115573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002674	exon1	c.G106A	p.D36N	.	.	.
PAH	5053	broad.mit.edu	36	12	101830803	101830803	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000277	exon2	c.A64G	p.T22A	.	.	.
STAB2	55576	broad.mit.edu	36	12	102681435	102681435	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon68	c.G7524A	p.K2508K	.	.	.
GLT8D2	83468	broad.mit.edu	36	12	102914687	102914687	+	Missense_Mutation	SNP	C	T	T	rs7133444	byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031302	exon8	c.G556A	p.D186N	.	.	.
HCFC2	29915	broad.mit.edu	36	12	102998708	102998708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013320	exon5	c.G737A	p.S246N	.	.	.
SLC41A2	84102	broad.mit.edu	36	12	103784386	103784386	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032148	exon6	c.C1129A	p.L377I	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104058837	104058837	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015275	exon17	c.G1591A	p.E531K	.	.	.
CKAP4	10970	broad.mit.edu	36	12	105158137	105158137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006825	exon2	c.G604A	p.E202K	.	.	.
TCP11L2	255394	broad.mit.edu	36	12	105253580	105253580	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152772	exon7	c.A806C	p.E269A	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105362431	105362431	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018082	exon19	c.C2016T	p.I672I	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105372531	105372531	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018082	exon20	c.T2205G	p.A735A	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106560071	106560071	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017523	exon12	c.T1526G	p.I509S	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107150780	107150780	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon7	c.C1122T	p.F374F	.	.	.
CMKLR1	1240	broad.mit.edu	36	12	107210626	107210626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142343	exon4	c.G244A	p.A82T	.	.	.
ACACB	32	broad.mit.edu	36	12	108089116	108089116	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon2	c.G721T	p.D241Y	.	.	.
FOXN4	121643	broad.mit.edu	36	12	108207640	108207640	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213596	exon8	c.C753T	p.F251F	.	.	.
MMAB	326625	broad.mit.edu	36	12	108483273	108483273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052845	exon7	c.C539T	p.S180L	.	.	.
TAS2R10	50839	broad.mit.edu	36	12	10869781	10869781	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023921	exon1	c.C355A	p.L119I	.	.	.
TRPV4	59341	broad.mit.edu	36	12	108725269	108725269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021625	exon4	c.G622A	p.D208N	.	.	.
HVCN1	84329	broad.mit.edu	36	12	109573453	109573453	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032369	exon6	c.G595T	p.G199C	.	.	.
CUX2	23316	broad.mit.edu	36	12	110215651	110215651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015267	exon6	c.C455T	p.S152L	.	.	.
TAS2R50	259296	broad.mit.edu	36	12	11029856	11029856	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176890	exon1	c.C871T	p.L291F	.	.	.
TAS2R20	259295	broad.mit.edu	36	12	11040978	11040978	+	Missense_Mutation	SNP	C	T	T	rs10845279	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176889	exon1	c.G764A	p.R255Q	.	.	.
BRAP	8315	broad.mit.edu	36	12	110603954	110603954	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006768	exon3	c.G313T	p.D105Y	.	.	.
NAA25	80018	broad.mit.edu	36	12	111012916	111012916	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024953	exon3	c.C280T	p.R94X	.	.	.
TAS2R30	259293	broad.mit.edu	36	12	11177658	11177658	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097643	exon1	c.G453A	p.E151E	.	.	.
OAS1	4938	broad.mit.edu	36	12	111841610	111841610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016816	exon6	c.G1072A	p.D358N	.	.	.
OAS3	4940	broad.mit.edu	36	12	111884953	111884953	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006187	exon9	c.C1947A	p.F649L	.	.	.
OAS2	4939	broad.mit.edu	36	12	111909429	111909429	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032731	exon2	c.C381A	p.F127L	.	.	.
OAS2	4939	broad.mit.edu	36	12	111932615	111932615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016817	exon11	c.G2103T	p.E701D	.	.	.
RBM19	9904	broad.mit.edu	36	12	112745442	112745442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016196	exon24	c.C2853T	p.S951S	.	.	.
NOS1	4842	broad.mit.edu	36	12	116149683	116149683	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon23	c.C3552A	p.S1184S	.	.	.
KSR2	283455	broad.mit.edu	36	12	116447320	116447320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173598	exon14	c.C1852T	p.R618C	.	.	.
KSR2	283455	broad.mit.edu	36	12	116890281	116890281	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173598	exon1	c.G76T	p.E26X	.	.	.
RFC5	5985	broad.mit.edu	36	12	116941933	116941933	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181578	exon4	c.G181T	p.E61X	.	.	.
RFC5	5985	broad.mit.edu	36	12	116947068	116947068	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130112	exon7	c.T196G	p.F66V	.	.	.
TAOK3	51347	broad.mit.edu	36	12	117099410	117099410	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016281	exon16	c.T1674G	p.I558M	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118047635	118047635	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194286	exon7	c.C582A	p.S194R	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118067576	118067576	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194286	exon9	c.G779T	p.G260V	.	.	.
CIT	11113	broad.mit.edu	36	12	118745013	118745013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon9	c.C1105T	p.R369C	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119077182	119077182	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon31	c.T3676G	p.S1226A	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119090419	119090419	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon16	c.T1588G	p.F530V	.	.	.
SIRT4	23409	broad.mit.edu	36	12	119234902	119234902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012240	exon3	c.C758T	p.A253V	.	.	.
CABP1	9478	broad.mit.edu	36	12	119572857	119572857	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031205	exon1	c.C34A	p.L12I	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120455167	120455167	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032590	exon8	c.C858A	p.I286I	.	.	.
WDR66	144406	broad.mit.edu	36	12	120882973	120882973	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178003	exon14	c.C2233T	p.R745X	.	.	.
WDR66	144406	broad.mit.edu	36	12	120926009	120926009	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144668	exon22	c.C3406A	p.L1136I	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121367253	121367253	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon17	c.G3331T	p.E1111X	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121397954	121397954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002956	exon9	c.G1394A	p.R465H	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121533981	121533981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017612	exon6	c.C584T	p.S195F	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121551322	121551322	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017612	exon1	c.T19G	p.F7V	.	.	.
RSRC2	65117	broad.mit.edu	36	12	121556043	121556043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023012	exon10	c.G1289A	p.G430E	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121607964	121607964	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014708	exon17	c.G1353A	p.W451X	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121618865	121618865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014708	exon21	c.G1709A	p.R570Q	.	.	.
PITPNM2	57605	broad.mit.edu	36	12	122063114	122063114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020845	exon4	c.C414T	p.I138I	.	.	.
MPHOSPH9	10198	broad.mit.edu	36	12	122207341	122207341	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022782	exon20	c.A3062C	p.K1021T	.	.	.
GTF2H3	2967	broad.mit.edu	36	12	122710681	122710681	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001516	exon13	c.T873G	p.I291M	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122899297	122899297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon33	c.G5663A	p.R1888Q	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122915180	122915180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon39	c.G6640A	p.A2214T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122925906	122925906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon46	c.C7760T	p.S2587L	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122980196	122980196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon71	c.G12195A	p.T4065T	.	.	.
AACS	65985	broad.mit.edu	36	12	124124420	124124420	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023928	exon2	c.A179G	p.D60G	.	.	.
CREBL2	1389	broad.mit.edu	36	12	12681783	12681783	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001310	exon3	c.T226C	p.C76R	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124458	128124458	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon9	c.A3215G	p.D1072G	.	.	.
FZD10	11211	broad.mit.edu	36	12	129214792	129214792	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007197	exon1	c.A1352G	p.Y451C	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129456676	129456676	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon17	c.T2991G	p.F997L	.	.	.
GPR133	283383	broad.mit.edu	36	12	130053710	130053710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon10	c.G1054A	p.D352N	.	.	.
GPR133	283383	broad.mit.edu	36	12	130159276	130159276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon18	c.G1942A	p.A648T	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130805965	130805965	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004592	exon10	c.C1536T	p.G512G	.	.	.
EP400	57634	broad.mit.edu	36	12	131056663	131056663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon14	c.G2986A	p.D996N	.	.	.
EP400	57634	broad.mit.edu	36	12	131088477	131088477	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon32	c.T6087G	p.V2029V	.	.	.
EP400	57634	broad.mit.edu	36	12	131103702	131103702	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon42	c.C7450T	p.R2484X	.	.	.
GSG1	83445	broad.mit.edu	36	12	13131377	13131377	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153823	exon5	c.T614C	p.V205A	.	.	.
POLE	5426	broad.mit.edu	36	12	131760362	131760362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon13	c.G1231T	p.V411L	.	.	.
CHFR	55743	broad.mit.edu	36	12	131948213	131948213	+	Missense_Mutation	SNP	G	A	A	rs35206714	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018223	exon7	c.C577T	p.L193F	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132097406	132097406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019591	exon4	c.G868A	p.E290K	.	.	.
ZNF140	7699	broad.mit.edu	36	12	132192730	132192730	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003440	exon5	c.G794T	p.R265I	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14480372	14480372	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon4	c.C1711T	p.R571X	.	.	.
WBP11	51729	broad.mit.edu	36	12	14833287	14833287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016312	exon11	c.C1357T	p.P453S	.	.	.
C12orf60	144608	broad.mit.edu	36	12	14867169	14867169	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175874	exon2	c.A33G	p.R11R	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15545855	15545855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002848	exon5	c.C696T	p.I232I	.	.	.
MGST1	4257	broad.mit.edu	36	12	16401879	16401879	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145764	exon3	c.A200G	p.D67G	.	.	.
SLC6A12	6539	broad.mit.edu	36	12	174701	174701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122847	exon13	c.C1380T	p.C460C	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18382627	18382627	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004570	exon9	c.G1273A	p.E425K	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1865665	1865665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172364	exon8	c.C978T	p.F326F	.	.	.
PLCZ1	89869	broad.mit.edu	36	12	18740440	18740440	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033123	exon11	c.A1202C	p.K401T	.	.	.
PLCZ1	89869	broad.mit.edu	36	12	18767685	18767685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033123	exon4	c.G194A	p.R65Q	.	.	.
PDE3A	5139	broad.mit.edu	36	12	20694751	20694751	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000921	exon14	c.G2875T	p.E959X	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21246886	21246886	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006446	exon10	c.G1330T	p.G444X	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21261379	21261379	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006446	exon12	c.C1557A	p.A519A	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21341672	21341672	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134431	exon10	c.C1008A	p.I336I	.	.	.
PYROXD1	79912	broad.mit.edu	36	12	21511693	21511693	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024854	exon11	c.G1128A	p.W376X	.	.	.
C12orf39	80763	broad.mit.edu	36	12	21571375	21571375	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030572	exon3	c.C127A	p.L43I	.	.	.
GYS2	2998	broad.mit.edu	36	12	21584684	21584684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon14	c.G1736A	p.R579H	.	.	.
LDHB	3945	broad.mit.edu	36	12	21691165	21691165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002300	exon3	c.G182A	p.G61E	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21854080	21854080	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon35	c.A4288G	p.M1430V	.	.	.
ETNK1	55500	broad.mit.edu	36	12	22688040	22688040	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018638	exon2	c.G500T	p.R167I	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2428446	2428446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon4	c.C521T	p.A174V	.	.	.
LYRM5	144363	broad.mit.edu	36	12	25248174	25248174	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001660	exon2	c.C17A	p.S6Y	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26644200	26644200	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon29	c.T3788G	p.F1263C	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26666601	26666601	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon25	c.G3127T	p.E1043X	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26726102	26726102	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon13	c.A1381C	p.N461H	.	.	.
C12orf11	55726	broad.mit.edu	36	12	26957749	26957749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018164	exon14	c.G1713T	p.K571N	.	.	.
KDM5A	5927	broad.mit.edu	36	12	272540	272540	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon27	c.G4512A	p.K1504K	.	.	.
ARNTL2	56938	broad.mit.edu	36	12	27447710	27447710	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020183	exon14	c.G1555T	p.D519Y	.	.	.
KLHDC5	57542	broad.mit.edu	36	12	27836061	27836061	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020782	exon2	c.T1026C	p.C342C	.	.	.
CCDC91	55297	broad.mit.edu	36	12	28406643	28406643	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018318	exon6	c.A582G	p.K194K	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29489492	29489492	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon23	c.T2867C	p.V956A	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29516069	29516069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon16	c.G1789A	p.D597N	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29530485	29530485	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon8	c.C956A	p.S319Y	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29540787	29540787	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon2	c.G152T	p.R51I	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29795940	29795940	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193451	exon5	c.C864T	p.C288C	.	.	.
IPO8	10526	broad.mit.edu	36	12	30678362	30678362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006390	exon23	c.G2821A	p.A941T	.	.	.
IPO8	10526	broad.mit.edu	36	12	30728569	30728569	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006390	exon3	c.G256A	p.E86K	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30754497	30754497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002259	exon18	c.G2990A	p.R997Q	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31496343	31496343	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144973	exon5	c.C1427A	p.S476Y	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32027372	32027372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018169	exon4	c.C2216T	p.S739L	.	.	.
BICD1	636	broad.mit.edu	36	12	32371786	32371786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003398	exon5	c.C1130T	p.A377V	.	.	.
BICD1	636	broad.mit.edu	36	12	32372622	32372622	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003398	exon5	c.G1966T	p.A656S	.	.	.
BICD1	636	broad.mit.edu	36	12	32421789	32421789	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001714	exon10	c.C2889T	p.C963C	.	.	.
FGD4	121512	broad.mit.edu	36	12	32682989	32682989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139241	exon16	c.C2036T	p.A679V	.	.	.
KDM5A	5927	broad.mit.edu	36	12	363491	363491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon3	c.G333A	p.E111E	.	.	.
KIF21A	55605	broad.mit.edu	36	12	37974530	37974530	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon34	c.A4829G	p.D1610G	.	.	.
PARP11	57097	broad.mit.edu	36	12	3801354	3801354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020367	exon6	c.G494A	p.R165Q	.	.	.
PARP11	57097	broad.mit.edu	36	12	3809322	3809322	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020367	exon2	c.T142C	p.F48L	.	.	.
ABCD2	225	broad.mit.edu	36	12	38253828	38253828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon9	c.G1960A	p.A654T	.	.	.
ABCD2	225	broad.mit.edu	36	12	38299477	38299477	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon1	c.G208A	p.E70K	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38912373	38912373	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon3	c.G268T	p.E90X	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253153	40253153	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon10	c.A2305G	p.K769E	.	.	.
ZCRB1	85437	broad.mit.edu	36	12	40994007	40994007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033114	exon6	c.C382T	p.R128C	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41145230	41145230	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144882	exon7	c.T873C	p.C291C	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41146445	41146445	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144882	exon6	c.T593G	p.I198S	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42119981	42119981	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon17	c.G2449T	p.E817X	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42434958	42434958	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098615	exon2	c.G358T	p.E120X	.	.	.
IRAK4	51135	broad.mit.edu	36	12	42453020	42453020	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016123	exon5	c.A529G	p.T177A	.	.	.
IRAK4	51135	broad.mit.edu	36	12	42462511	42462511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016123	exon9	c.C1076T	p.A359V	.	.	.
NELL2	4753	broad.mit.edu	36	12	43188999	43188999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145108	exon20	c.C2436T	p.C812C	.	.	.
ANO6	196527	broad.mit.edu	36	12	43982130	43982130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025356	exon2	c.G137A	p.R46Q	.	.	.
ANO6	196527	broad.mit.edu	36	12	44109260	44109260	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025356	exon20	c.C2632A	p.L878I	.	.	.
FGF6	2251	broad.mit.edu	36	12	4424810	4424810	+	Missense_Mutation	SNP	G	A	A	rs17183529	byFrequency	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020996	exon1	c.C188T	p.A63V	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44607121	44607121	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon11	c.G2630T	p.R877I	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44611565	44611565	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon10	c.G832A	p.E278K	.	.	.
C12orf4	57102	broad.mit.edu	36	12	4513634	4513634	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020374	exon3	c.G274T	p.E92X	.	.	.
FAM113B	91523	broad.mit.edu	36	12	45915164	45915164	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138371	exon2	c.C51T	p.F17F	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46654745	46654745	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033150	exon51	c.A3847G	p.T1283A	.	.	.
SENP1	29843	broad.mit.edu	36	12	46729033	46729033	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014554	exon14	c.T1557G	p.F519L	.	.	.
SENP1	29843	broad.mit.edu	36	12	46776446	46776446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014554	exon4	c.G167A	p.R56Q	.	.	.
C12orf54	121273	broad.mit.edu	36	12	47173017	47173017	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152319	exon7	c.A214G	p.T72A	.	.	.
DDX23	9416	broad.mit.edu	36	12	47516833	47516833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004818	exon10	c.G1022A	p.R341H	.	.	.
KCNA6	3742	broad.mit.edu	36	12	4790050	4790050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002235	exon1	c.G582A	p.E194E	.	.	.
FMNL3	91010	broad.mit.edu	36	12	48330798	48330798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175736	exon17	c.G1928A	p.R643H	.	.	.
FMNL3	91010	broad.mit.edu	36	12	48331336	48331336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175736	exon16	c.G1679A	p.R560Q	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48928738	48928738	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113546	exon2	c.G64T	p.E22X	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49408673	49408673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173602	exon30	c.G3586A	p.A1196T	.	.	.
ATF1	466	broad.mit.edu	36	12	49460260	49460260	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005171	exon2	c.G65A	p.G22E	.	.	.
TMPRSS12	283471	broad.mit.edu	36	12	49523035	49523035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182559	exon1	c.C21T	p.S7S	.	.	.
SLC11A2	4891	broad.mit.edu	36	12	49675801	49675801	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174125	exon10	c.C955T	p.R319X	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50445969	50445969	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014191	exon16	c.G2792A	p.R931Q	.	.	.
ANKRD33	341405	broad.mit.edu	36	12	50570727	50570727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130015	exon5	c.C355T	p.R119W	.	.	.
KRT82	3888	broad.mit.edu	36	12	51076974	51076974	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033033	exon6	c.T1028C	p.I343T	.	.	.
KRT6A	3853	broad.mit.edu	36	12	51172783	51172783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005554	exon1	c.G457A	p.D153N	.	.	.
KRT5	3852	broad.mit.edu	36	12	51197774	51197774	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000424	exon5	c.A959G	p.D320G	.	.	.
KRT72	140807	broad.mit.edu	36	12	51281177	51281177	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146226	exon1	c.G327A	p.P109P	.	.	.
KRT2	3849	broad.mit.edu	36	12	51330490	51330490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000423	exon2	c.G700A	p.D234N	.	.	.
KRT3	3850	broad.mit.edu	36	12	51471284	51471284	+	Missense_Mutation	SNP	C	T	T	rs60410063	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057088	exon7	c.G1508A	p.R503H	.	.	.
TENC1	23371	broad.mit.edu	36	12	51732519	51732519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170754	exon3	c.G198A	p.A66A	.	.	.
IGFBP6	3489	broad.mit.edu	36	12	51780875	51780875	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002178	exon2	c.G447A	p.Q149Q	.	.	.
ITGB7	3695	broad.mit.edu	36	12	51880403	51880403	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000889	exon3	c.C92A	p.A31D	.	.	.
RARG	5916	broad.mit.edu	36	12	51895365	51895365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000966	exon5	c.G454A	p.E152K	.	.	.
SP7	121340	broad.mit.edu	36	12	52008456	52008456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152860	exon2	c.G1037A	p.R346H	.	.	.
ATF7	11016	broad.mit.edu	36	12	52197367	52197367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006856	exon12	c.G1273A	p.A425T	.	.	.
HOXC5	3222	broad.mit.edu	36	12	52714337	52714337	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018953	exon2	c.G463A	p.G155S	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53206722	53206722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184976	exon21	c.G2150A	p.R717H	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53642526	53642526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon9	c.C1423T	p.R475W	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53642882	53642882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon9	c.C1067T	p.S356F	.	.	.
OR9K2	441639	broad.mit.edu	36	12	53809973	53809973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005243	exon1	c.C154A	p.L52I	.	.	.
OR6C76	390326	broad.mit.edu	36	12	54107140	54107140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005183	exon1	c.C836T	p.A279V	.	.	.
OR6C2	341416	broad.mit.edu	36	12	54132454	54132454	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054105	exon1	c.T190G	p.F64V	.	.	.
OR6C2	341416	broad.mit.edu	36	12	54132564	54132564	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054105	exon1	c.C300A	p.F100L	.	.	.
OR6C68	403284	broad.mit.edu	36	12	54172666	54172666	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005519	exon1	c.T253G	p.L85V	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54381192	54381192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144997	exon4	c.G137A	p.R46Q	.	.	.
CD63	967	broad.mit.edu	36	12	54406271	54406271	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001780	exon6	c.A468C	p.K156N	.	.	.
RBMS2	5939	broad.mit.edu	36	12	55242548	55242548	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002898	exon2	c.A147C	p.G49G	.	.	.
LRP1	4035	broad.mit.edu	36	12	55884462	55884462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon71	c.C10954T	p.R3652W	.	.	.
ANO2	57101	broad.mit.edu	36	12	5592362	5592362	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020373	exon19	c.A1952G	p.Y651C	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56154927	56154927	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080156	exon11	c.G1097T	p.R366I	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56158641	56158641	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032496	exon3	c.C483T	p.S161S	.	.	.
DCTN2	10540	broad.mit.edu	36	12	56215877	56215877	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006400	exon3	c.A125C	p.K42T	.	.	.
ARHGEF25	115557	broad.mit.edu	36	12	56295738	56295738	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111270	exon13	c.A1332C	p.G444G	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57566921	57566921	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153377	exon9	c.A1110C	p.E370D	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58455278	58455278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004731	exon4	c.G935A	p.R312Q	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58459482	58459482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004731	exon5	c.G1192A	p.D398N	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58459629	58459629	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004731	exon5	c.G1339T	p.E447X	.	.	.
MON2	23041	broad.mit.edu	36	12	61240745	61240745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon26	c.G3617A	p.S1206N	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62348267	62348267	+	Silent	SNP	C	T	T	rs34588711	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173812	exon1	c.G174A	p.R58R	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62822534	62822534	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon22	c.C3073T	p.R1025X	.	.	.
C12orf56	115749	broad.mit.edu	36	12	63033020	63033020	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170633	exon2	c.G336T	p.L112F	.	.	.
XPOT	11260	broad.mit.edu	36	12	63101469	63101469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007235	exon9	c.C1031A	p.S344Y	.	.	.
XPOT	11260	broad.mit.edu	36	12	63105910	63105910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007235	exon15	c.C1621T	p.R541W	.	.	.
LTBR	4055	broad.mit.edu	36	12	6364530	6364530	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002342	exon3	c.G275A	p.W92X	.	.	.
NCAPD2	9918	broad.mit.edu	36	12	6489533	6489533	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014865	exon4	c.G235T	p.E79X	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65057318	65057318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178074	exon20	c.C2480T	p.A827V	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65125520	65125520	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178074	exon11	c.C1234T	p.Q412X	.	.	.
NOP2	4839	broad.mit.edu	36	12	6543370	6543370	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006170	exon6	c.C466T	p.L156L	.	.	.
CHD4	1108	broad.mit.edu	36	12	6562672	6562672	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon26	c.G4013T	p.R1338I	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6618391	6618391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032489	exon9	c.G1499A	p.R500H	.	.	.
COPS7A	50813	broad.mit.edu	36	12	6708836	6708836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164093	exon4	c.C490T	p.R164C	.	.	.
NUP107	57122	broad.mit.edu	36	12	67412782	67412782	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020401	exon23	c.C2097A	p.F699L	.	.	.
SLC35E3	55508	broad.mit.edu	36	12	67428070	67428070	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018656	exon2	c.A496G	p.T166A	.	.	.
CD4	920	broad.mit.edu	36	12	6793623	6793623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000616	exon4	c.G269A	p.G90E	.	.	.
FRS2	10818	broad.mit.edu	36	12	68254782	68254782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042555	exon10	c.A1307G	p.Y436C	.	.	.
CNOT2	4848	broad.mit.edu	36	12	69009484	69009484	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199303	exon5	c.C253T	p.P85S	.	.	.
CNOT2	4848	broad.mit.edu	36	12	69010457	69010457	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199303	exon6	c.G510A	p.S170S	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69249816	69249816	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109754	exon14	c.G3540A	p.T1180T	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69251874	69251874	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109754	exon12	c.A3103G	p.T1035A	.	.	.
PTPN6	5777	broad.mit.edu	36	12	6931432	6931432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002831	exon3	c.C157T	p.R53W	.	.	.
C1S	716	broad.mit.edu	36	12	7040082	7040082	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201442	exon3	c.G48A	p.E16E	.	.	.
TPH2	121278	broad.mit.edu	36	12	70711681	70711681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173353	exon11	c.G1412A	p.R471H	.	.	.
C1R	715	broad.mit.edu	36	12	7133857	7133857	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001733	exon3	c.C360A	p.F120L	.	.	.
CD163	9332	broad.mit.edu	36	12	7531255	7531255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon8	c.C2017T	p.P673S	.	.	.
CD163	9332	broad.mit.edu	36	12	7531414	7531414	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon8	c.C1858A	p.L620I	.	.	.
ZDHHC17	23390	broad.mit.edu	36	12	75768798	75768798	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015336	exon17	c.C1801T	p.R601X	.	.	.
E2F7	144455	broad.mit.edu	36	12	75951860	75951860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203394	exon8	c.C1217T	p.A406V	.	.	.
NAV3	89795	broad.mit.edu	36	12	76924447	76924447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon8	c.G998A	p.R333H	.	.	.
GDF3	9573	broad.mit.edu	36	12	7734542	7734542	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020634	exon2	c.T294G	p.I98M	.	.	.
CLEC4C	170482	broad.mit.edu	36	12	7774744	7774744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203503	exon5	c.C320A	p.S107Y	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80257153	80257153	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003625	exon21	c.G2485T	p.G829X	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80293816	80293816	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003625	exon10	c.A1021C	p.T341P	.	.	.
CCDC59	29080	broad.mit.edu	36	12	81271133	81271133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014167	exon4	c.G654T	p.K218N	.	.	.
RASSF9	9182	broad.mit.edu	36	12	84722853	84722853	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005447	exon2	c.G1066T	p.E356X	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84897893	84897893	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013244	exon7	c.T742C	p.Y248H	.	.	.
CLEC4D	338339	broad.mit.edu	36	12	8562067	8562067	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080387	exon3	c.A162T	p.G54G	.	.	.
AICDA	57379	broad.mit.edu	36	12	8650829	8650829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020661	exon2	c.C55T	p.R19C	.	.	.
CEP290	80184	broad.mit.edu	36	12	86968312	86968312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon53	c.G7159T	p.D2387Y	.	.	.
CEP290	80184	broad.mit.edu	36	12	86995763	86995763	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon40	c.A5428C	p.N1810H	.	.	.
CEP290	80184	broad.mit.edu	36	12	87011854	87011854	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon28	c.A3133C	p.K1045Q	.	.	.
CEP290	80184	broad.mit.edu	36	12	87024706	87024706	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon25	c.G2694A	p.R898R	.	.	.
CEP290	80184	broad.mit.edu	36	12	87036562	87036562	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon16	c.C1612A	p.L538I	.	.	.
RIMKLB	57494	broad.mit.edu	36	12	8757857	8757857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020734	exon3	c.C128T	p.A43V	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8880173	8880173	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon7	c.G699C	p.Q233H	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8895706	8895706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon19	c.C2294T	p.A765V	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8895769	8895769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon19	c.C2357T	p.A786V	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89872635	89872635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152638	exon1	c.G16A	p.D6N	.	.	.
A2M	2	broad.mit.edu	36	12	9138863	9138863	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000014	exon17	c.C2098G	p.P700A	.	.	.
PZP	5858	broad.mit.edu	36	12	9197079	9197079	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon30	c.A3902T	p.N1301I	.	.	.
PZP	5858	broad.mit.edu	36	12	9198617	9198617	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon29	c.G3636A	p.V1212V	.	.	.
PZP	5858	broad.mit.edu	36	12	9209917	9209917	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon18	c.G2256T	p.V752V	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93104326	93104326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005761	exon4	c.C1385T	p.S462L	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93165876	93165876	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005761	exon13	c.C2455T	p.R819C	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93251434	93251434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016122	exon13	c.G1532A	p.R511Q	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93321121	93321121	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016122	exon5	c.G373T	p.E125X	.	.	.
USP44	84101	broad.mit.edu	36	12	94446762	94446762	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon3	c.G1576T	p.E526X	.	.	.
CCDC38	120935	broad.mit.edu	36	12	94799448	94799448	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182496	exon11	c.C936T	p.F312F	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94870696	94870696	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152435	exon2	c.G208T	p.E70X	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94878467	94878467	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152435	exon5	c.G748A	p.G250R	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95863715	95863715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152905	exon14	c.C1768T	p.R590C	.	.	.
APAF1	317	broad.mit.edu	36	12	97595352	97595352	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon13	c.G1779A	p.T593T	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	97716845	97716845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181670	exon8	c.C1015T	p.R339W	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98724512	98724512	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152788	exon4	c.G470T	p.R157I	.	.	.
CLEC2B	9976	broad.mit.edu	36	12	9901439	9901439	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005127	exon3	c.C138T	p.C46C	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	99015321	99015321	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006947	exon6	c.C622T	p.R208X	.	.	.
SCYL2	55681	broad.mit.edu	36	12	99229077	99229077	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017988	exon5	c.C605A	p.S202X	.	.	.
ANO4	121601	broad.mit.edu	36	12	99860326	99860326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178826	exon4	c.G233A	p.R78Q	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39661119	39661119	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175038	exon15	c.1913delG	p.W638X	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43854243	43854243	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MIR196A2	406973	broad.mit.edu	36	12	52671859	52671859	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NALCN	259232	broad.mit.edu	36	13	100533173	100533173	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon33	c.C3753A	p.I1251I	.	.	.
NALCN	259232	broad.mit.edu	36	13	100593441	100593441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon17	c.C2109T	p.I703I	.	.	.
NALCN	259232	broad.mit.edu	36	13	100642286	100642286	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon14	c.C1747A	p.H583N	.	.	.
C13orf27	93081	broad.mit.edu	36	13	102217638	102217638	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138779	exon5	c.G490T	p.E164X	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102257855	102257855	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017693	exon3	c.G237A	p.A79A	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102266821	102266821	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017693	exon4	c.A521C	p.K174T	.	.	.
LIG4	3981	broad.mit.edu	36	13	107659206	107659206	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002312	exon2	c.C2412A	p.S804S	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109625047	109625047	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon38	c.A3249C	p.E1083D	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109637608	109637608	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon25	c.G1606A	p.D536N	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109643184	109643184	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon23	c.G1459T	p.E487X	.	.	.
C13orf28	122258	broad.mit.edu	36	13	112100413	112100413	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145248	exon3	c.C201T	p.S67S	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649395	18649395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006001	exon4	c.G728A	p.R243Q	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18937660	18937660	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141968	exon7	c.G224T	p.R75I	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19297175	19297175	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142684	exon8	c.G1452T	p.E484D	.	.	.
CRYL1	51084	broad.mit.edu	36	13	19876851	19876851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015974	exon7	c.G769A	p.E257K	.	.	.
XPO4	64328	broad.mit.edu	36	13	20327888	20327888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022459	exon4	c.C334T	p.R112W	.	.	.
SACS	26278	broad.mit.edu	36	13	22802719	22802719	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.C13296A	p.F4432L	.	.	.
SACS	26278	broad.mit.edu	36	13	22807780	22807780	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.A8235C	p.E2745D	.	.	.
PARP4	143	broad.mit.edu	36	13	23942090	23942090	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon16	c.A1988G	p.D663G	.	.	.
PARP4	143	broad.mit.edu	36	13	23956855	23956855	+	Missense_Mutation	SNP	G	A	A	rs61742542	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon12	c.C1384T	p.R462C	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24356559	24356559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon14	c.C3520T	p.P1174S	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24379043	24379043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon7	c.G1133A	p.R378Q	.	.	.
FAM123A	219287	broad.mit.edu	36	13	24641937	24641937	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152704	exon1	c.G1821T	p.K607N	.	.	.
MTMR6	9107	broad.mit.edu	36	13	24733929	24733929	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004685	exon6	c.T603C	p.C201C	.	.	.
NUPL1	9818	broad.mit.edu	36	13	24785024	24785024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014089	exon4	c.C290T	p.T97M	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	24941168	24941168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon2	c.G130A	p.A44T	.	.	.
GSX1	219409	broad.mit.edu	36	13	27265983	27265983	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145657	exon2	c.C693T	p.C231C	.	.	.
FLT3	2322	broad.mit.edu	36	13	27495607	27495607	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004119	exon19	c.T2298G	p.I766M	.	.	.
PAN3	255967	broad.mit.edu	36	13	27739237	27739237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175854	exon11	c.C1579T	p.R527C	.	.	.
USPL1	10208	broad.mit.edu	36	13	30103223	30103223	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005800	exon4	c.G480A	p.Q160Q	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31264097	31264097	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166058	exon14	c.C1228A	p.L410I	.	.	.
FRY	10129	broad.mit.edu	36	13	31726498	31726498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon51	c.C7383T	p.F2461F	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32148060	32148060	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon9	c.C926A	p.S309Y	.	.	.
NBEA	26960	broad.mit.edu	36	13	34628312	34628312	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon20	c.A2620C	p.K874Q	.	.	.
NBEA	26960	broad.mit.edu	36	13	35027211	35027211	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon44	c.A6894G	p.E2298E	.	.	.
ALG5	29880	broad.mit.edu	36	13	36467724	36467724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142364	exon2	c.G76A	p.V26I	.	.	.
POSTN	10631	broad.mit.edu	36	13	37052783	37052783	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135934	exon11	c.A1444C	p.N482H	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37218332	37218332	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon3	c.C639T	p.S213S	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37255251	37255251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon2	c.C220T	p.L74F	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163013	38163013	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon1	c.T3532C	p.F1178L	.	.	.
ELF1	1997	broad.mit.edu	36	13	40431125	40431125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172373	exon3	c.G100A	p.V34I	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40603852	40603852	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.C796T	p.R266C	.	.	.
NAA16	79612	broad.mit.edu	36	13	40841328	40841328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon15	c.G1856A	p.R619H	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41161620	41161620	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon34	c.A4001C	p.K1334T	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41283433	41283433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon17	c.G1991A	p.R664Q	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41775281	41775281	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016248	exon8	c.A4399C	p.K1467Q	.	.	.
ENOX1	55068	broad.mit.edu	36	13	42794530	42794530	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127615	exon11	c.C1251T	p.V417V	.	.	.
ENOX1	55068	broad.mit.edu	36	13	42833431	42833431	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127615	exon6	c.T366G	p.L122L	.	.	.
SLC25A30	253512	broad.mit.edu	36	13	44868148	44868148	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010875	exon10	c.C837A	p.F279L	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45461176	45461176	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon9	c.T1002G	p.S334S	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45816918	45816918	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025113	exon14	c.T1835C	p.V612A	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45840291	45840291	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025113	exon5	c.G713T	p.S238I	.	.	.
HTR2A	3356	broad.mit.edu	36	13	46364614	46364614	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165947	exon2	c.C273T	p.V91V	.	.	.
NUDT15	55270	broad.mit.edu	36	13	47513146	47513146	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018283	exon2	c.C248A	p.S83Y	.	.	.
RB1	5925	broad.mit.edu	36	13	47835019	47835019	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon8	c.G786A	p.R262R	.	.	.
KPNA3	3839	broad.mit.edu	36	13	49178285	49178285	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002267	exon14	c.G1159T	p.E387X	.	.	.
TRIM13	10206	broad.mit.edu	36	13	49485064	49485064	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005798	exon3	c.C987T	p.V329V	.	.	.
KCNRG	283518	broad.mit.edu	36	13	49492585	49492585	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173605	exon2	c.G813T	p.K271N	.	.	.
INTS6	26512	broad.mit.edu	36	13	50850512	50850512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012141	exon12	c.G1466A	p.R489Q	.	.	.
ATP7B	540	broad.mit.edu	36	13	51407102	51407102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000053	exon21	c.G4189A	p.A1397T	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51500542	51500542	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004127	exon4	c.G1294C	p.G432R	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51502117	51502117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021645	exon2	c.G1176A	p.E392E	.	.	.
NEK3	4752	broad.mit.edu	36	13	51626308	51626308	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146099	exon3	c.C119A	p.S40Y	.	.	.
VPS36	51028	broad.mit.edu	36	13	51895721	51895721	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016075	exon10	c.C829T	p.R277X	.	.	.
SUGT1	10910	broad.mit.edu	36	13	52130569	52130569	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130912	exon4	c.C222A	p.L74L	.	.	.
OLFM4	10562	broad.mit.edu	36	13	52514084	52514084	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006418	exon3	c.G396T	p.K132N	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105547	57105547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.G866A	p.R289H	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59463311	59463311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030932	exon6	c.G554A	p.R185Q	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59488271	59488271	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042517	exon6	c.A636C	p.E212D	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60000912	60000912	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146071	exon11	c.G1273T	p.E425X	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60001096	60001096	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146071	exon11	c.G1457A	p.R486Q	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699794	66699794	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.T780C	p.H260H	.	.	.
DIS3	22894	broad.mit.edu	36	13	72248084	72248084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128226	exon5	c.G712A	p.D238N	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74784941	74784941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014832	exon13	c.C2317T	p.R773W	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74798510	74798510	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014832	exon10	c.G1857A	p.P619P	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74809172	74809172	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014832	exon8	c.T1617G	p.I539M	.	.	.
FBXL3	26224	broad.mit.edu	36	13	76487591	76487591	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012158	exon4	c.A597C	p.T199T	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76628271	76628271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon46	c.C6838T	p.R2280C	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76678957	76678957	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon24	c.C3421T	p.R1141X	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76715969	76715969	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon16	c.G2500T	p.E834X	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85266180	85266180	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.A2465C	p.E822A	.	.	.
DCT	1638	broad.mit.edu	36	13	93893789	93893789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001922	exon7	c.G1283A	p.R428Q	.	.	.
DCT	1638	broad.mit.edu	36	13	93919133	93919133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001922	exon2	c.G463A	p.D155N	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94471845	94471845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005845	exon31	c.C3963T	p.F1321F	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94656797	94656797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105515	exon8	c.G1151A	p.R384Q	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95032560	95032560	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon22	c.G2476T	p.E826X	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95040541	95040541	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon16	c.C1779T	p.L593L	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95463657	95463657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020121	exon5	c.G565A	p.E189K	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95473375	95473375	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020121	exon4	c.T405C	p.C135C	.	.	.
HS6ST3	266722	broad.mit.edu	36	13	96283256	96283256	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153456	exon2	c.C1219A	p.L407I	.	.	.
OXGR1	27199	broad.mit.edu	36	13	96437026	96437026	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080818	exon4	c.A989C	p.K330T	.	.	.
RAP2A	5911	broad.mit.edu	36	13	96914608	96914608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021033	exon2	c.G463A	p.E155K	.	.	.
STK24	8428	broad.mit.edu	36	13	97914019	97914019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003576	exon7	c.G892A	p.E298K	.	.	.
SLC15A1	6564	broad.mit.edu	36	13	98172150	98172150	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005073	exon6	c.C374A	p.S125Y	.	.	.
GPR183	1880	broad.mit.edu	36	13	98745430	98745430	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004951	exon2	c.A971C	p.K324T	.	.	.
UBAC2	337867	broad.mit.edu	36	13	98835485	98835485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144072	exon9	c.C930T	p.V310V	.	.	.
PCCA	5095	broad.mit.edu	36	13	99753221	99753221	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178004	exon14	c.T1252C	p.S418P	.	.	.
PPP2R5C	5527	broad.mit.edu	36	14	101429176	101429176	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178587	exon7	c.C776A	p.S259Y	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101970539	101970539	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014844	exon9	c.C1632T	p.P544P	.	.	.
POTEG	404785	broad.mit.edu	36	14	18644195	18644195	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005356	exon9	c.G1252T	p.E418X	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19414448	19414448	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005501	exon1	c.T182G	p.F61C	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19415081	19415081	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005501	exon1	c.C815A	p.S272Y	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19473865	19473865	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004063	exon1	c.C200A	p.S67Y	.	.	.
OR4K17	390436	broad.mit.edu	36	14	19656146	19656146	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004715	exon1	c.C741T	p.I247I	.	.	.
OR11G2	390439	broad.mit.edu	36	14	19736111	19736111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005503	exon1	c.C777T	p.V259V	.	.	.
CCNB1IP1	57820	broad.mit.edu	36	14	19851668	19851668	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182849	exon5	c.A430G	p.T144A	.	.	.
ANG	283	broad.mit.edu	36	14	20231919	20231919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097577	exon2	c.G356A	p.R119Q	.	.	.
METT11D1	64745	broad.mit.edu	36	14	20534634	20534634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022734	exon13	c.C1189T	p.R397C	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20840538	20840538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon4	c.C542T	p.A181V	.	.	.
CHD8	57680	broad.mit.edu	36	14	20937627	20937627	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020920	exon26	c.C4058T	p.S1353L	.	.	.
TOX4	9878	broad.mit.edu	36	14	21030669	21030669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014828	exon7	c.G1054A	p.A352T	.	.	.
OXA1L	5018	broad.mit.edu	36	14	22309617	22309617	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005015	exon6	c.C957A	p.S319S	.	.	.
SLC7A7	9056	broad.mit.edu	36	14	22312718	22312718	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126106	exon11	c.G1477T	p.E493X	.	.	.
MYH6	4624	broad.mit.edu	36	14	22925408	22925408	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon33	c.G4915A	p.A1639T	.	.	.
MYH7	4625	broad.mit.edu	36	14	22969999	22969999	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon10	c.T846A	p.D282E	.	.	.
GMPR2	51292	broad.mit.edu	36	14	23777637	23777637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016576	exon9	c.C914T	p.A305V	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23857508	23857508	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198592	exon26	c.A3188G	p.N1063S	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23914731	23914731	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136022	exon8	c.G2088A	p.E696E	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29116411	29116411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon18	c.C2523A	p.D841E	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30667653	30667653	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon25	c.A4675C	p.N1559H	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32361800	32361800	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon13	c.C5030T	p.A1677V	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35287601	35287601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194301	exon10	c.C1192T	p.R398C	.	.	.
TRAPPC6B	122553	broad.mit.edu	36	14	38690736	38690736	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177452	exon4	c.G326T	p.S109I	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44502479	44502479	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015091	exon1	c.A1105G	p.T369A	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46459091	46459091	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182830	exon10	c.C1218A	p.F406L	.	.	.
C14orf104	55172	broad.mit.edu	36	14	49169819	49169819	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083908	exon1	c.A1799C	p.K600T	.	.	.
CDKL1	8814	broad.mit.edu	36	14	49868831	49868831	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004196	exon8	c.A868C	p.N290H	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50515899	50515899	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015163	exon9	c.G2026T	p.E676X	.	.	.
FERMT2	10979	broad.mit.edu	36	14	52394907	52394907	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134999	exon16	c.A2002C	p.K668Q	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54546924	54546924	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007086	exon4	c.G194T	p.G65V	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54695039	54695039	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146015	exon14	c.C1827T	p.F609F	.	.	.
TBPL2	387332	broad.mit.edu	36	14	54960705	54960705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199047	exon6	c.C976T	p.P326S	.	.	.
OTX2	5015	broad.mit.edu	36	14	56338795	56338795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021728	exon5	c.G305A	p.R102H	.	.	.
OTX2	5015	broad.mit.edu	36	14	56340706	56340706	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021728	exon4	c.C226T	p.R76X	.	.	.
MUDENG	55745	broad.mit.edu	36	14	56810844	56810844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018229	exon2	c.C204T	p.F68F	.	.	.
PSMA3	5684	broad.mit.edu	36	14	57788699	57788699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002788	exon3	c.C214T	p.R72W	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57855247	57855247	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon7	c.G420A	p.T140T	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	57994423	57994423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014749	exon11	c.C1556T	p.S519L	.	.	.
DACT1	51339	broad.mit.edu	36	14	58181852	58181852	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079520	exon4	c.A647C	p.K216T	.	.	.
DACT1	51339	broad.mit.edu	36	14	58182105	58182105	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079520	exon4	c.A900C	p.K300N	.	.	.
RTN1	6252	broad.mit.edu	36	14	59282219	59282219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021136	exon2	c.C975T	p.D325D	.	.	.
RTN1	6252	broad.mit.edu	36	14	59282801	59282801	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021136	exon2	c.T393G	p.N131K	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250057	60250057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon3	c.G2167A	p.E723K	.	.	.
SLC38A6	145389	broad.mit.edu	36	14	60566948	60566948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153811	exon6	c.G436A	p.E146K	.	.	.
PRKCH	5583	broad.mit.edu	36	14	61084239	61084239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006255	exon13	c.G1787A	p.R596H	.	.	.
SYT16	83851	broad.mit.edu	36	14	61636973	61636973	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031914	exon6	c.T1733C	p.V578A	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63589826	63589826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon48	c.G9442A	p.E3148K	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63666581	63666581	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon76	c.C14202T	p.F4734F	.	.	.
ESR2	2100	broad.mit.edu	36	14	63805366	63805366	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001437	exon4	c.T552G	p.I184M	.	.	.
RAB15	376267	broad.mit.edu	36	14	64486824	64486824	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198686	exon5	c.G517A	p.G173S	.	.	.
MPP5	64398	broad.mit.edu	36	14	66815795	66815795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022474	exon3	c.G155A	p.R52Q	.	.	.
VTI1B	10490	broad.mit.edu	36	14	67187866	67187866	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006370	exon6	c.C688T	p.R230C	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67321652	67321652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015346	exon19	c.C3400A	p.L1134I	.	.	.
SLC10A1	6554	broad.mit.edu	36	14	69312817	69312817	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003049	exon5	c.A985G	p.T329A	.	.	.
COX16	51241	broad.mit.edu	36	14	69865669	69865669	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016468	exon3	c.A179C	p.K60T	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69995178	69995178	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.C1209T	p.I403I	.	.	.
PCNX	22990	broad.mit.edu	36	14	70610140	70610140	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon27	c.C4978T	p.R1660X	.	.	.
RGS6	9628	broad.mit.edu	36	14	72054881	72054881	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004296	exon15	c.C1161A	p.I387I	.	.	.
RBM25	58517	broad.mit.edu	36	14	72656199	72656199	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021239	exon19	c.T2465G	p.F822C	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74314981	74314981	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019589	exon2	c.A952C	p.K318Q	.	.	.
PROX2	283571	broad.mit.edu	36	14	74400215	74400215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080408	exon1	c.G76A	p.E26K	.	.	.
MLH3	27030	broad.mit.edu	36	14	74583647	74583647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040108	exon2	c.G2465A	p.S822N	.	.	.
NEK9	91754	broad.mit.edu	36	14	74637479	74637479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033116	exon16	c.C1971T	p.C657C	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75714087	75714087	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017926	exon7	c.G1056T	p.K352N	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76779023	76779023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020431	exon15	c.C1212A	p.F404L	.	.	.
TMED8	283578	broad.mit.edu	36	14	76879403	76879403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213601	exon5	c.G631A	p.D211N	.	.	.
C14orf178	283579	broad.mit.edu	36	14	77305649	77305649	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174943	exon3	c.G244T	p.D82Y	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78187339	78187339	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004796	exon3	c.T19G	p.F7V	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80297700	80297700	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152446	exon16	c.T2387C	p.I796T	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80372429	80372429	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152446	exon11	c.A930G	p.E310E	.	.	.
GTF2A1	2957	broad.mit.edu	36	14	80737696	80737696	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015859	exon4	c.A397C	p.N133H	.	.	.
STON2	85439	broad.mit.edu	36	14	80814302	80814302	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033104	exon4	c.T1106G	p.F369C	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158657	85158657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013231	exon2	c.C1046T	p.A349V	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88131022	88131022	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207662	exon1	c.C199A	p.L67I	.	.	.
EML5	161436	broad.mit.edu	36	14	88262748	88262748	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon8	c.A1077C	p.L359F	.	.	.
TDP1	55775	broad.mit.edu	36	14	89520639	89520639	+	Missense_Mutation	SNP	G	A	A	rs34452707	byCluster;byFrequency;by1000genomes	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008744	exon8	c.G911A	p.R304Q	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720257	89720257	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022054	exon2	c.C384T	p.I128I	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91196057	91196057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024764	exon15	c.G1309A	p.G437S	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91541759	91541759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon11	c.G2314T	p.D772Y	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91550515	91550515	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon7	c.A983G	p.D328G	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	91978817	91978817	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153646	exon6	c.C486T	p.F162F	.	.	.
RIN3	79890	broad.mit.edu	36	14	92195355	92195355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024832	exon7	c.C2123T	p.S708L	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92799948	92799948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002860	exon4	c.C1307T	p.S436L	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92824738	92824738	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018167	exon4	c.T1231C	p.X411Q	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93153325	93153325	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon28	c.G3615A	p.P1205P	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93744645	93744645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020958	exon3	c.C283T	p.P95S	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93787880	93787880	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon16	c.T1759G	p.L587V	.	.	.
DICER1	23405	broad.mit.edu	36	14	94639585	94639585	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195573	exon20	c.T3901A	p.L1301M	.	.	.
DICER1	23405	broad.mit.edu	36	14	94647434	94647434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195573	exon13	c.G2229A	p.T743T	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95849207	95849207	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018036	exon25	c.A3790G	p.T1264A	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95852711	95852711	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018036	exon21	c.T3273C	p.G1091G	.	.	.
VRK1	7443	broad.mit.edu	36	14	96391401	96391401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003384	exon8	c.G664A	p.D222N	.	.	.
EML1	2009	broad.mit.edu	36	14	99456898	99456898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008707	exon18	c.G1897A	p.E633K	.	.	.
MIR376A1	494325	broad.mit.edu	36	14	100576885	100576885	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20393527	20393527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052903	exon6	c.G525A	p.Q175Q	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20400401	20400401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052903	exon10	c.G1007A	p.G336E	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23167670	23167670	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130839	exon6	c.A744C	p.K248N	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23577304	23577304	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon2	c.G609A	p.E203E	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25399460	25399460	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033223	exon6	c.C644A	p.S215X	.	.	.
OCA2	4948	broad.mit.edu	36	15	25790625	25790625	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000275	exon20	c.A2118G	p.E706E	.	.	.
HERC2	8924	broad.mit.edu	36	15	26198884	26198884	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon5	c.G467T	p.R156I	.	.	.
CHRFAM7A	89832	broad.mit.edu	36	15	28447012	28447012	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139320	exon9	c.C621T	p.F207F	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29081693	29081693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon27	c.G4436A	p.R1479H	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29082288	29082288	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon27	c.G3841T	p.E1281X	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29117235	29117235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon19	c.G2476A	p.A826T	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29128954	29128954	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon12	c.C1422T	p.V474V	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29142079	29142079	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon8	c.G1018T	p.E340X	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30715342	30715342	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199357	exon11	c.C1417T	p.R473X	.	.	.
FMN1	342184	broad.mit.edu	36	15	30878429	30878429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103184	exon15	c.G3329A	p.R1110Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31703418	31703418	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon20	c.G2476T	p.E826X	.	.	.
RYR3	6263	broad.mit.edu	36	15	31851535	31851535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon63	c.G8939A	p.R2980Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31923038	31923038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon92	c.G13267A	p.A4423T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31933069	31933069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon96	c.C13693A	p.L4565I	.	.	.
C15orf24	56851	broad.mit.edu	36	15	32163860	32163860	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020154	exon5	c.A696C	p.K232N	.	.	.
AQR	9716	broad.mit.edu	36	15	33023804	33023804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014691	exon6	c.C448A	p.L150I	.	.	.
RASGRP1	10125	broad.mit.edu	36	15	36578380	36578380	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005739	exon15	c.C1780T	p.R594X	.	.	.
BUB1B	701	broad.mit.edu	36	15	38300087	38300087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001211	exon23	c.C2988A	p.F996L	.	.	.
CASC5	57082	broad.mit.edu	36	15	38694853	38694853	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon9	c.T385C	p.Y129H	.	.	.
RAD51	5888	broad.mit.edu	36	15	38810629	38810629	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002875	exon10	c.C981T	p.F327F	.	.	.
EXD1	161829	broad.mit.edu	36	15	39263599	39263599	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152596	exon10	c.A1367C	p.K456T	.	.	.
MGA	23269	broad.mit.edu	36	15	39808715	39808715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon11	c.G3719A	p.R1240Q	.	.	.
MGA	23269	broad.mit.edu	36	15	39815940	39815940	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon13	c.A4186G	p.K1396E	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39894191	39894191	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014994	exon10	c.T1132G	p.S378A	.	.	.
EHD4	30844	broad.mit.edu	36	15	39989225	39989225	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139265	exon5	c.T1053G	p.I351M	.	.	.
VPS39	23339	broad.mit.edu	36	15	40241573	40241573	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015289	exon23	c.G2409T	p.K803N	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40856653	40856653	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173500	exon12	c.T1277C	p.V426A	.	.	.
TMEM62	80021	broad.mit.edu	36	15	41263937	41263937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024956	exon14	c.G1793A	p.G598D	.	.	.
TGM5	9333	broad.mit.edu	36	15	41318336	41318336	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004245	exon8	c.A1070G	p.D357G	.	.	.
TUBGCP4	27229	broad.mit.edu	36	15	41455683	41455683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014444	exon2	c.C174A	p.F58L	.	.	.
PDIA3	2923	broad.mit.edu	36	15	41845050	41845050	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005313	exon6	c.A713G	p.E238G	.	.	.
WDR76	79968	broad.mit.edu	36	15	41919142	41919142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167941	exon5	c.G464A	p.R155Q	.	.	.
SPG11	80208	broad.mit.edu	36	15	42652197	42652197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon33	c.G6319A	p.V2107I	.	.	.
C15orf43	145645	broad.mit.edu	36	15	43037906	43037906	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152448	exon3	c.T190G	p.F64V	.	.	.
SHF	90525	broad.mit.edu	36	15	43251464	43251464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138356	exon7	c.G994A	p.D332N	.	.	.
SQRDL	58472	broad.mit.edu	36	15	43770492	43770492	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021199	exon10	c.G1325A	p.R442H	.	.	.
SLC24A5	283652	broad.mit.edu	36	15	46201383	46201383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205850	exon2	c.G159A	p.E53E	.	.	.
MYEF2	50804	broad.mit.edu	36	15	46245493	46245493	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016132	exon5	c.G454T	p.E152X	.	.	.
FBN1	2200	broad.mit.edu	36	15	46490769	46490769	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon66	c.C8326T	p.R2776X	.	.	.
FBN1	2200	broad.mit.edu	36	15	46514101	46514101	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon54	c.C6598T	p.P2200S	.	.	.
FBN1	2200	broad.mit.edu	36	15	46617197	46617197	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon7	c.C639T	p.V213V	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47096380	47096380	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014701	exon9	c.C1241A	p.A414D	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47108154	47108154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014701	exon5	c.G682A	p.A228T	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	47955909	47955909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024837	exon25	c.G2885A	p.G962E	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48126933	48126933	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024837	exon4	c.G108A	p.S36S	.	.	.
SLC27A2	11001	broad.mit.edu	36	15	48262279	48262279	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159629	exon1	c.G363A	p.W121X	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48672053	48672053	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017672	exon26	c.C3671A	p.S1224X	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48689122	48689122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon19	c.G2528A	p.R843Q	.	.	.
GLDN	342035	broad.mit.edu	36	15	49483953	49483953	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181789	exon10	c.A1366G	p.T456A	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49579390	49579390	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon18	c.A3323C	p.E1108A	.	.	.
SCG3	29106	broad.mit.edu	36	15	49798924	49798924	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013243	exon12	c.T1316C	p.F439S	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50355136	50355136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018728	exon5	c.C521T	p.A174V	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50446545	50446545	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000259	exon23	c.C3135T	p.I1045I	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50455888	50455888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000259	exon19	c.C2368T	p.R790W	.	.	.
WDR72	256764	broad.mit.edu	36	15	51695111	51695111	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon15	c.T2584G	p.L862V	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52092937	52092937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon1	c.G545A	p.R182Q	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52706553	52706553	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon31	c.G6595T	p.E2199X	.	.	.
RFX7	64864	broad.mit.edu	36	15	54322626	54322626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022841	exon1	c.G150T	p.K50N	.	.	.
MNS1	55329	broad.mit.edu	36	15	54526409	54526409	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018365	exon4	c.G378T	p.K126N	.	.	.
TCF12	6938	broad.mit.edu	36	15	55331917	55331917	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207037	exon15	c.C1195T	p.R399X	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55741002	55741002	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018100	exon11	c.G1182T	p.K394N	.	.	.
LDHAL6B	92483	broad.mit.edu	36	15	57287350	57287350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033195	exon1	c.G919A	p.D307N	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60060871	60060871	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon20	c.A1999C	p.K667Q	.	.	.
TLN2	83660	broad.mit.edu	36	15	60850474	60850474	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015059	exon39	c.A5216C	p.Y1739S	.	.	.
TPM1	7168	broad.mit.edu	36	15	61140172	61140172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018007	exon5	c.C544T	p.R182W	.	.	.
USP3	9960	broad.mit.edu	36	15	61669980	61669980	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006537	exon15	c.A1465G	p.T489A	.	.	.
HERC1	8925	broad.mit.edu	36	15	61731724	61731724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon52	c.G10360A	p.V3454I	.	.	.
HERC1	8925	broad.mit.edu	36	15	61733409	61733409	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon51	c.A10252T	p.K3418X	.	.	.
PPIB	5479	broad.mit.edu	36	15	62235332	62235332	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000942	exon5	c.C594A	p.I198I	.	.	.
RBPMS2	348093	broad.mit.edu	36	15	62828384	62828384	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194272	exon5	c.G286A	p.E96K	.	.	.
CILP	8483	broad.mit.edu	36	15	63276187	63276187	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003613	exon9	c.C3490T	p.R1164C	.	.	.
DPP8	54878	broad.mit.edu	36	15	63546193	63546193	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017743	exon14	c.C1701A	p.F567L	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63749414	63749414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon26	c.G4628A	p.R1543Q	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63812181	63812181	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon8	c.C1070A	p.P357H	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64386233	64386233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143688	exon3	c.G311A	p.R104Q	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64405547	64405547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143688	exon12	c.G1992T	p.K664N	.	.	.
ZWILCH	55055	broad.mit.edu	36	15	64600036	64600036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017975	exon6	c.G575T	p.R192I	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65244384	65244384	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145103	exon2	c.G172A	p.E58K	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65264221	65264221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145103	exon7	c.G842A	p.G281D	.	.	.
IQCH	64799	broad.mit.edu	36	15	65423458	65423458	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031715	exon6	c.T512G	p.I171S	.	.	.
IQCH	64799	broad.mit.edu	36	15	65452781	65452781	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031715	exon10	c.G1328A	p.R443H	.	.	.
MAP2K5	5607	broad.mit.edu	36	15	65642696	65642696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145160	exon3	c.G206A	p.R69Q	.	.	.
NOX5	79400	broad.mit.edu	36	15	67136060	67136060	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184779	exon16	c.C2184T	p.F728F	.	.	.
GLCE	26035	broad.mit.edu	36	15	67335741	67335741	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015554	exon3	c.A542G	p.N181S	.	.	.
UACA	55075	broad.mit.edu	36	15	68748069	68748069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018003	exon16	c.G2008A	p.E670K	.	.	.
UACA	55075	broad.mit.edu	36	15	68763750	68763750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018003	exon8	c.C692T	p.A231V	.	.	.
LRRC49	54839	broad.mit.edu	36	15	69128948	69128948	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017691	exon16	c.T2004G	p.I668M	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69909691	69909691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon40	c.C6853T	p.R2285C	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69931652	69931652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon36	c.C6350T	p.A2117V	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69933900	69933900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon35	c.G6218A	p.R2073Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	70125459	70125459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon2	c.G500A	p.R167Q	.	.	.
C15orf60	283677	broad.mit.edu	36	15	71553244	71553244	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042367	exon2	c.G178T	p.E60X	.	.	.
PML	5371	broad.mit.edu	36	15	72114855	72114855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033250	exon7	c.G1856A	p.R619H	.	.	.
ISLR2	57611	broad.mit.edu	36	15	72212368	72212368	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020851	exon3	c.G220A	p.V74I	.	.	.
CSK	1445	broad.mit.edu	36	15	72880443	72880443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004383	exon9	c.G760A	p.V254M	.	.	.
CPLX3	594855	broad.mit.edu	36	15	72909559	72909559	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030005	exon3	c.T288C	p.G96G	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73486485	73486485	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145358	exon9	c.A1371G	p.K457K	.	.	.
TBC1D2B	23102	broad.mit.edu	36	15	76103669	76103669	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144572	exon6	c.G1354A	p.E452K	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77111604	77111604	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002891	exon7	c.C1068T	p.F356F	.	.	.
TMED3	23423	broad.mit.edu	36	15	77401518	77401518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007364	exon3	c.G561A	p.T187T	.	.	.
ARNT2	9915	broad.mit.edu	36	15	78632097	78632097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014862	exon10	c.C1016T	p.S339F	.	.	.
TMC3	342125	broad.mit.edu	36	15	79424238	79424238	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080532	exon13	c.C1442A	p.P481H	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81021818	81021818	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079535	exon3	c.C491A	p.A164D	.	.	.
AP3B2	8120	broad.mit.edu	36	15	81125474	81125474	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004644	exon26	c.A3141G	p.X1047W	.	.	.
FSD2	123722	broad.mit.edu	36	15	81253102	81253102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007122	exon2	c.G95A	p.R32K	.	.	.
BNC1	646	broad.mit.edu	36	15	81717837	81717837	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon5	c.A2346C	p.E782D	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82036414	82036414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003027	exon6	c.G541A	p.E181K	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82330709	82330709	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon9	c.C954A	p.I318I	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82373097	82373097	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207517	exon16	c.C1950T	p.Y650Y	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82485013	82485013	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon27	c.T4477G	p.S1493A	.	.	.
ZSCAN2	54993	broad.mit.edu	36	15	82964840	82964840	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181877	exon3	c.T410G	p.F137C	.	.	.
ZSCAN2	54993	broad.mit.edu	36	15	82966247	82966247	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181877	exon3	c.G1817T	p.R606I	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83127518	83127518	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon4	c.A608C	p.K203T	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83208871	83208871	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020778	exon12	c.A5300C	p.N1767T	.	.	.
PDE8A	5151	broad.mit.edu	36	15	83465170	83465170	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002605	exon18	c.C1873T	p.L625L	.	.	.
MRPS11	64963	broad.mit.edu	36	15	86819415	86819415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022839	exon4	c.C352T	p.R118W	.	.	.
ACAN	176	broad.mit.edu	36	15	87202985	87202986	+	Nonsense_Mutation	DNP	CC	TT	TT	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135	exon12	c.6165_6166TT	.	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87559312	87559312	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000326	exon6	c.G508T	p.E170X	.	.	.
WDR93	56964	broad.mit.edu	36	15	88082455	88082455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020212	exon16	c.C1945T	p.R649C	.	.	.
PRC1	9055	broad.mit.edu	36	15	89311392	89311392	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003981	exon15	c.C1836T	p.I612I	.	.	.
SV2B	9899	broad.mit.edu	36	15	89628403	89628403	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014848	exon12	c.G1656T	p.G552G	.	.	.
CHD2	1106	broad.mit.edu	36	15	91293221	91293221	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042572	exon13	c.G1413T	p.K471N	.	.	.
SYNM	23336	broad.mit.edu	36	15	97487144	97487144	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015286	exon4	c.A1055C	p.K352T	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98070271	98070271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005587	exon11	c.G1272A	p.P424P	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98406709	98406709	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139057	exon18	c.A2467G	p.T823A	.	.	.
ALDH1A3	220	broad.mit.edu	36	15	99251781	99251781	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000693	exon6	c.G637A	p.A213T	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99368274	99368274	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon8	c.T1086G	p.N362K	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535734	99535734	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014918	exon3	c.C1791T	p.A597A	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535892	99535892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014918	exon3	c.G1633A	p.D545N	.	.	.
PCSK6	5046	broad.mit.edu	36	15	99789776	99789776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138322	exon3	c.G453A	p.A151A	.	.	.
PPL	5493	broad.mit.edu	36	16	4874480	4874481	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002705	exon22	c.4177_4178insG	p.Q1393fs	.	.	.
CIITA	4261	broad.mit.edu	36	16	10911592	10911592	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon13	c.C2863T	p.R955W	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	10959252	10959252	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015226	exon2	c.G193T	p.D65Y	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	10970624	10970624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015226	exon4	c.C449T	p.S150L	.	.	.
MKL2	57496	broad.mit.edu	36	16	14248361	14248361	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014048	exon12	c.C1743T	p.I581I	.	.	.
MYH11	4629	broad.mit.edu	36	16	15783743	15783743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon7	c.C747A	p.F249L	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16112740	16112740	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon21	c.T2702G	p.L901R	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17136071	17136071	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022166	exon9	c.T1787G	p.F596C	.	.	.
COQ7	10229	broad.mit.edu	36	16	18994640	18994640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190983	exon4	c.C350T	p.T117M	.	.	.
TMC5	79838	broad.mit.edu	36	16	19362915	19362915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105248	exon4	c.G800T	p.R267I	.	.	.
GPR139	124274	broad.mit.edu	36	16	19951020	19951020	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002911	exon2	c.C600A	p.F200L	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20919159	20919159	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon43	c.C6309T	p.F2103F	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21055237	21055237	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon6	c.G795A	p.T265T	.	.	.
METTL9	51108	broad.mit.edu	36	16	21531577	21531577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016025	exon2	c.G276A	p.S92S	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22050028	22050028	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173615	exon18	c.T1654C	p.F552L	.	.	.
USP31	57478	broad.mit.edu	36	16	23021204	23021204	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon6	c.G1171A	p.D391N	.	.	.
SCNN1B	6338	broad.mit.edu	36	16	23298950	23298950	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000336	exon12	c.G1501T	p.E501X	.	.	.
COG7	91949	broad.mit.edu	36	16	23363900	23363900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153603	exon3	c.C405T	p.S135S	.	.	.
GGA2	23062	broad.mit.edu	36	16	23410529	23410529	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015044	exon5	c.C445T	p.R149X	.	.	.
PLK1	5347	broad.mit.edu	36	16	23599848	23599848	+	Silent	SNP	C	T	T	rs11645497	byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005030	exon3	c.C690T	p.F230F	.	.	.
ERN2	10595	broad.mit.edu	36	16	23614772	23614772	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033266	exon14	c.T1698G	p.I566M	.	.	.
ERN2	10595	broad.mit.edu	36	16	23625888	23625888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033266	exon5	c.C464T	p.T155I	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24013103	24013103	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212535	exon7	c.G805A	p.A269T	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24133596	24133596	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002738	exon17	c.C1980A	p.S660S	.	.	.
TBC1D24	57465	broad.mit.edu	36	16	2489915	2489915	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199107	exon6	c.G1285T	p.E429X	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27680347	27680347	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015202	exon19	c.C3744A	p.I1248I	.	.	.
PRSS21	10942	broad.mit.edu	36	16	2808787	2808787	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006799	exon4	c.G366A	p.S122S	.	.	.
CLN3	1201	broad.mit.edu	36	16	28402835	28402835	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042432	exon10	c.G783A	p.S261S	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28749495	28749495	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148415	exon9	c.C1093T	p.R365X	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31298461	31298461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000887	exon24	c.G2861A	p.R954K	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31333362	31333362	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon17	c.A2086G	p.T696A	.	.	.
SLC5A2	6524	broad.mit.edu	36	16	31404605	31404605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003041	exon4	c.G358A	p.A120T	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834606	31834606	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003414	exon4	c.A1535C	p.K512T	.	.	.
ZNF200	7752	broad.mit.edu	36	16	3214190	3214190	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003454	exon5	c.A891G	p.K297K	.	.	.
ZNF200	7752	broad.mit.edu	36	16	3214539	3214539	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003454	exon5	c.C542T	p.S181F	.	.	.
OR2C1	4993	broad.mit.edu	36	16	3346318	3346318	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012368	exon1	c.T377C	p.V126A	.	.	.
ZNF174	7727	broad.mit.edu	36	16	3398833	3398833	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003450	exon3	c.G1137A	p.E379E	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3768176	3768176	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon10	c.T1950G	p.Y650X	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3781994	3781994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon5	c.G1319A	p.R440Q	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3840436	3840436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon2	c.G661A	p.G221R	.	.	.
C16orf87	388272	broad.mit.edu	36	16	45394378	45394378	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001436	exon4	c.G452T	p.R151I	.	.	.
NETO2	81831	broad.mit.edu	36	16	45675119	45675119	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon9	c.T1092G	p.I364M	.	.	.
ITFG1	81533	broad.mit.edu	36	16	46042881	46042881	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030790	exon5	c.T487G	p.F163V	.	.	.
C16orf71	146562	broad.mit.edu	36	16	4726557	4726557	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139170	exon2	c.C41A	p.S14Y	.	.	.
BRD7	29117	broad.mit.edu	36	16	48911365	48911365	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013263	exon16	c.C1834T	p.R612X	.	.	.
SNX20	124460	broad.mit.edu	36	16	49265409	49265409	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182854	exon4	c.C360T	p.F120F	.	.	.
SALL1	6299	broad.mit.edu	36	16	49733300	49733300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.G334A	p.D112N	.	.	.
CHD9	80205	broad.mit.edu	36	16	51865666	51865666	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon24	c.G4918T	p.E1640X	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52210606	52210606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127897	exon22	c.C3208T	p.R1070W	.	.	.
IRX3	79191	broad.mit.edu	36	16	52876633	52876633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024336	exon2	c.G661A	p.D221N	.	.	.
MMP2	4313	broad.mit.edu	36	16	54074393	54074393	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004530	exon2	c.G225T	p.K75N	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54283363	54283363	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172504	exon5	c.C816T	p.F272F	.	.	.
BBS2	583	broad.mit.edu	36	16	55076196	55076196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031885	exon17	c.G2144A	p.R715Q	.	.	.
BBS2	583	broad.mit.edu	36	16	55097447	55097447	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031885	exon7	c.G720A	p.S240S	.	.	.
CETP	1071	broad.mit.edu	36	16	55561058	55561058	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000078	exon4	c.G403A	p.D135N	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55668259	55668259	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon40	c.C4779T	p.V1593V	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56496173	56496173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001297	exon26	c.C2600T	p.T867M	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56511817	56511817	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001297	exon19	c.C1776A	p.T592T	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57170192	57170192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon13	c.G1496A	p.R499H	.	.	.
CDH11	1009	broad.mit.edu	36	16	63596094	63596094	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon3	c.C180A	p.F60L	.	.	.
CBFB	865	broad.mit.edu	36	16	65673671	65673671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001755	exon5	c.G454A	p.E152K	.	.	.
KIAA0895L	653319	broad.mit.edu	36	16	65770892	65770892	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040715	exon4	c.G789A	p.A263A	.	.	.
RLTPR	146206	broad.mit.edu	36	16	66245798	66245798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013838	exon31	c.G3284A	p.R1095Q	.	.	.
TMCO7	79613	broad.mit.edu	36	16	67451634	67451634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024562	exon2	c.C441T	p.F147F	.	.	.
WWP2	11060	broad.mit.edu	36	16	68479478	68479478	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199423	exon9	c.G739T	p.E247X	.	.	.
COG4	25839	broad.mit.edu	36	16	69099838	69099838	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015386	exon8	c.A1033G	p.N345D	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69441989	69441989	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon74	c.G12511T	p.E4171X	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69452101	69452101	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon70	c.G11979A	p.K3993K	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69454583	69454583	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon68	c.C11472T	p.F3824F	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69466255	69466255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon63	c.C10623T	p.I3541I	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70041212	70041212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145911	exon6	c.G217A	p.D73N	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70044751	70044751	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145911	exon5	c.T38C	p.F13S	.	.	.
TAT	6898	broad.mit.edu	36	16	70167380	70167380	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000353	exon3	c.G286A	p.A96T	.	.	.
AP1G1	164	broad.mit.edu	36	16	70362586	70362586	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030007	exon5	c.A539C	p.K180T	.	.	.
HPR	3250	broad.mit.edu	36	16	70668331	70668331	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020995	exon5	c.T897C	p.S299S	.	.	.
PMFBP1	83449	broad.mit.edu	36	16	70714316	70714316	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160213	exon20	c.G2331T	p.K777N	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71386881	71386881	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon9	c.A7201C	p.T2401P	.	.	.
WDR59	79726	broad.mit.edu	36	16	73513398	73513398	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030581	exon10	c.C834T	p.F278F	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75112606	75112606	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138994	exon15	c.G2215T	p.E739X	.	.	.
CENPN	55839	broad.mit.edu	36	16	79608906	79608906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018455	exon5	c.C320T	p.S107L	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79745417	79745417	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon25	c.G4153T	p.D1385Y	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79772340	79772340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon12	c.G2035T	p.D679Y	.	.	.
CDH13	1012	broad.mit.edu	36	16	82077745	82077745	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001257	exon7	c.C944T	p.A315V	.	.	.
LRRC50	123872	broad.mit.edu	36	16	82763404	82763404	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178452	exon9	c.C1566T	p.F522F	.	.	.
ZDHHC7	55625	broad.mit.edu	36	16	83567505	83567505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017740	exon8	c.G872A	p.R291Q	.	.	.
FAM92B	339145	broad.mit.edu	36	16	83698956	83698956	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198491	exon4	c.G423T	p.M141I	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87193814	87193814	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144604	exon6	c.C1045T	p.R349X	.	.	.
ABAT	18	broad.mit.edu	36	16	8770216	8770216	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000663	exon11	c.A701G	p.H234R	.	.	.
ZNF778	197320	broad.mit.edu	36	16	87820917	87820917	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182531	exon6	c.T636C	p.L212L	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87877933	87877933	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013275	exon9	c.C2518T	p.R840W	.	.	.
SPG7	6687	broad.mit.edu	36	16	88106863	88106863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003119	exon3	c.C293T	p.T98I	.	.	.
SPIRE2	84501	broad.mit.edu	36	16	88453249	88453249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032451	exon9	c.G1448A	p.G483D	.	.	.
USP7	7874	broad.mit.edu	36	16	8904713	8904713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon16	c.C1752T	p.Y584Y	.	.	.
USP7	7874	broad.mit.edu	36	16	8905900	8905900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon15	c.G1597A	p.D533N	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9939643	9939643	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon3	c.C681A	p.I227I	.	.	.
DOK4	55715	broad.mit.edu	36	16	56065150	56065150	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FXR2	9513	broad.mit.edu	36	17	7436846	7436847	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004860	exon14	c.1620_1621insC	p.P540fs	.	.	.
MYH13	8735	broad.mit.edu	36	17	10155197	10155197	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon33	c.A4604C	p.K1535T	.	.	.
MYH13	8735	broad.mit.edu	36	17	10156736	10156736	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon31	c.C4245T	p.C1415C	.	.	.
MYH13	8735	broad.mit.edu	36	17	10163186	10163186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon27	c.G3384A	p.A1128A	.	.	.
MYH13	8735	broad.mit.edu	36	17	10164436	10164436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon25	c.G3214A	p.D1072N	.	.	.
MYH8	4626	broad.mit.edu	36	17	10237229	10237229	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon36	c.G5190T	p.K1730N	.	.	.
MYH8	4626	broad.mit.edu	36	17	10245199	10245199	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon25	c.G3143A	p.R1048Q	.	.	.
MYH4	4622	broad.mit.edu	36	17	10297782	10297782	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017533	exon23	c.A2837C	p.K946T	.	.	.
MYH1	4619	broad.mit.edu	36	17	10340473	10340473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon34	c.G4775A	p.R1592K	.	.	.
MYH1	4619	broad.mit.edu	36	17	10341399	10341399	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon32	c.G4461T	p.K1487N	.	.	.
MYH3	4621	broad.mit.edu	36	17	10476822	10476822	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002470	exon33	c.C4652A	p.A1551D	.	.	.
MYH3	4621	broad.mit.edu	36	17	10481955	10481955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002470	exon27	c.G3752A	p.R1251Q	.	.	.
MYH3	4621	broad.mit.edu	36	17	10483667	10483667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002470	exon22	c.G2860T	p.D954Y	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11508947	11508947	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon15	c.T2668G	p.L890V	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11678854	11678854	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon49	c.C9421T	p.Q3141X	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12580289	12580289	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146312	exon6	c.C502T	p.R168X	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12590006	12590006	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146312	exon9	c.G1017A	p.T339T	 MYOCD,central_nervous_system,brain,Substitution - coding silent,0 	.	.
MYOCD	93649	broad.mit.edu	36	17	12607306	12607306	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146312	exon14	c.T2581C	p.S861P	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12834099	12834099	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014859	exon21	c.G2343A	p.S781S	.	.	.
HS3ST3B1	9953	broad.mit.edu	36	17	14189671	14189671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006041	exon2	c.G1156A	p.D386N	.	.	.
TEKT3	64518	broad.mit.edu	36	17	15175601	15175601	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031898	exon3	c.G27A	p.T9T	.	.	.
CDRT1	374286	broad.mit.edu	36	17	15463175	15463175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006382	exon1	c.C377T	p.A126V	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15560542	15560542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130842	exon6	c.G779A	p.R260Q	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15965265	15965265	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon15	c.G1678T	p.E560X	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15970228	15970228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon14	c.G1527A	p.S509S	.	.	.
MED9	55090	broad.mit.edu	36	17	17335516	17335516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018019	exon2	c.C423T	p.F141F	.	.	.
LRRC48	83450	broad.mit.edu	36	17	17848494	17848494	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031294	exon10	c.G1092A	p.A364A	.	.	.
ALDH3A2	224	broad.mit.edu	36	17	19515671	19515671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000382	exon9	c.C1253T	p.T418I	.	.	.
ALDH3A1	218	broad.mit.edu	36	17	19586490	19586490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135168	exon3	c.C440T	p.A147V	.	.	.
METT10D	79066	broad.mit.edu	36	17	2270047	2270047	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024086	exon10	c.T1656C	p.R552R	.	.	.
METT10D	79066	broad.mit.edu	36	17	2270442	2270442	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024086	exon10	c.G1261T	p.E421X	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23979560	23979560	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014680	exon24	c.A4444C	p.N1482H	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25443165	25443165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198529	exon21	c.C4088A	p.S1363Y	.	.	.
CPD	1362	broad.mit.edu	36	17	25774686	25774686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199775	exon6	c.G953A	p.G318E	.	.	.
GOSR1	9527	broad.mit.edu	36	17	25843894	25843894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007024	exon6	c.G317A	p.R106Q	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26187000	26187000	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon2	c.A1775C	p.K592T	.	.	.
ADAP2	55803	broad.mit.edu	36	17	26278023	26278023	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018404	exon3	c.T278C	p.V93A	.	.	.
C17orf97	400566	broad.mit.edu	36	17	263509	263509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013672	exon2	c.C559T	p.R187C	.	.	.
OMG	4974	broad.mit.edu	36	17	26646240	26646240	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002544	exon2	c.G1236T	p.K412N	.	.	.
OMG	4974	broad.mit.edu	36	17	26646920	26646920	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002544	exon2	c.A556G	p.T186A	.	.	.
NF1	4763	broad.mit.edu	36	17	26707618	26707618	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000267	exon51	c.T7567G	p.F2523V	.	.	.
UTP6	55813	broad.mit.edu	36	17	27224549	27224549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018428	exon16	c.G1457A	p.R486Q	.	.	.
RHBDL3	162494	broad.mit.edu	36	17	27656497	27656497	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138328	exon7	c.A806G	p.D269G	.	.	.
ACCN1	40	broad.mit.edu	36	17	28368742	28368742	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183377	exon8	c.T1515G	p.I505M	.	.	.
ACCN1	40	broad.mit.edu	36	17	29507252	29507252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001094	exon1	c.G413A	p.R138Q	.	.	.
CCL13	6357	broad.mit.edu	36	17	29707666	29707666	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005408	exon1	c.T8C	p.V3A	.	.	.
AMAC1	146861	broad.mit.edu	36	17	30545214	30545214	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152462	exon1	c.C226T	p.R76X	.	.	.
OR1A1	8383	broad.mit.edu	36	17	3066521	3066521	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014565	exon1	c.T857C	p.F286S	.	.	.
CCL23	6368	broad.mit.edu	36	17	31364373	31364373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145898	exon4	c.C340T	p.R114W	.	.	.
CCL18	6362	broad.mit.edu	36	17	31422443	31422443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002988	exon3	c.C199T	p.R67W	.	.	.
MRM1	79922	broad.mit.edu	36	17	32038800	32038800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024864	exon5	c.C898A	p.L300I	.	.	.
ACACA	31	broad.mit.edu	36	17	32619442	32619442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon39	c.G4664A	p.R1555H	.	.	.
ACACA	31	broad.mit.edu	36	17	32714343	32714343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon5	c.G548A	p.R183Q	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736015	33736015	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.G6963A	p.R2321R	.	.	.
GPR179	440435	broad.mit.edu	36	17	33738747	33738747	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.A4231G	p.K1411E	.	.	.
PCGF2	7703	broad.mit.edu	36	17	34148885	34148885	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007144	exon6	c.G278A	p.R93Q	.	.	.
MED1	5469	broad.mit.edu	36	17	34819943	34819943	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004774	exon17	c.A2057C	p.K686T	.	.	.
CDK12	51755	broad.mit.edu	36	17	34921310	34921310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016507	exon8	c.G2669A	p.R890H	.	.	.
C17orf37	84299	broad.mit.edu	36	17	35139368	35139368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032339	exon4	c.G281A	p.R94Q	.	.	.
GSDMB	55876	broad.mit.edu	36	17	35315682	35315682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042471	exon8	c.G932A	p.G311E	.	.	.
GSDMB	55876	broad.mit.edu	36	17	35322163	35322163	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042471	exon3	c.A349C	p.K117Q	.	.	.
GSDMA	284110	broad.mit.edu	36	17	35381335	35381335	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178171	exon5	c.C591T	p.I197I	.	.	.
RAPGEFL1	51195	broad.mit.edu	36	17	35594121	35594121	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016339	exon3	c.C111A	p.I37I	.	.	.
GSG2	83903	broad.mit.edu	36	17	3575303	3575303	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031965	exon1	c.A1325T	p.Y442F	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35802460	35802460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001067	exon30	c.G3867T	p.K1289N	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3598017	3598017	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002208	exon17	c.G2103A	p.V701V	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3601697	3601697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002208	exon15	c.C1889T	p.S630L	.	.	.
KRT34	3885	broad.mit.edu	36	17	36790934	36790934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021013	exon3	c.G614A	p.R205H	.	.	.
KRT31	3881	broad.mit.edu	36	17	36805311	36805311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002277	exon4	c.G679A	p.E227K	.	.	.
KRT13	3860	broad.mit.edu	36	17	36913102	36913102	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153490	exon3	c.A698C	p.N233T	.	.	.
KRT16	3868	broad.mit.edu	36	17	37021474	37021474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005557	exon2	c.C557T	p.A186V	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38097052	38097052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003632	exon15	c.G2341A	p.D781N	.	.	.
BRCA1	672	broad.mit.edu	36	17	38480041	38480041	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007294	exon14	c.C4508A	p.S1503X	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3955760	3955760	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015113	exon7	c.A1370G	p.D457G	.	.	.
DBF4B	80174	broad.mit.edu	36	17	40174277	40174277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025104	exon10	c.C761A	p.S254Y	.	.	.
CDC27	996	broad.mit.edu	36	17	42604316	42604316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114091	exon3	c.T217C	p.Y73H	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42735176	42735176	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon13	c.A2105C	p.K702T	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42807160	42807160	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152347	exon12	c.C1201A	p.H401N	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	43017869	43017869	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006310	exon6	c.T653C	p.V218A	.	.	.
LRRC46	90506	broad.mit.edu	36	17	43266800	43266800	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033413	exon3	c.C127T	p.L43F	.	.	.
B4GALNT2	124872	broad.mit.edu	36	17	44601888	44601888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153446	exon11	c.C1500A	p.F500L	.	.	.
ZNF652	22834	broad.mit.edu	36	17	44750031	44750031	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145365	exon2	c.T56C	p.V19A	.	.	.
NXPH3	11248	broad.mit.edu	36	17	45011482	45011482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007225	exon2	c.G580A	p.D194N	.	.	.
NXPH3	11248	broad.mit.edu	36	17	45011572	45011572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007225	exon2	c.G670A	p.A224T	.	.	.
MYST2	11143	broad.mit.edu	36	17	45230719	45230719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007067	exon4	c.G380A	p.R127Q	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45503228	45503228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002204	exon5	c.G686A	p.R229H	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45513723	45513723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002204	exon23	c.C2871T	p.F957F	.	.	.
ACSF2	80221	broad.mit.edu	36	17	45858633	45858633	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025149	exon1	c.C12T	p.Y4Y	.	.	.
CHAD	1101	broad.mit.edu	36	17	45900965	45900965	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001267	exon1	c.C209T	p.S70L	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256729	49256729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032559	exon1	c.G1336A	p.V446I	.	.	.
USP6	9098	broad.mit.edu	36	17	4999536	4999536	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004505	exon23	c.G2739T	p.K913N	.	.	.
USP6	9098	broad.mit.edu	36	17	5014678	5014678	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004505	exon28	c.C3698A	p.A1233D	.	.	.
ZNF594	84622	broad.mit.edu	36	17	5027836	5027836	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032530	exon2	c.G440T	p.R147I	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51585880	51585880	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153228	exon1	c.C11A	p.S4Y	.	.	.
RABEP1	9135	broad.mit.edu	36	17	5182149	5182149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083585	exon5	c.G640A	p.A214T	.	.	.
COIL	8161	broad.mit.edu	36	17	52382342	52382342	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004645	exon2	c.G1260A	p.G420G	.	.	.
MPO	4353	broad.mit.edu	36	17	53712220	53712220	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000250	exon3	c.C403T	p.R135X	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031338	54031338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon14	c.C2367T	p.G789G	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031431	54031431	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon14	c.C2274T	p.V758V	.	.	.
TMEM49	81671	broad.mit.edu	36	17	55167535	55167535	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030938	exon3	c.T131G	p.I44S	.	.	.
HEATR6	63897	broad.mit.edu	36	17	55481792	55481792	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022070	exon16	c.G2478T	p.K826N	.	.	.
USP32	84669	broad.mit.edu	36	17	55639229	55639229	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032582	exon25	c.T2972G	p.F991C	.	.	.
C17orf64	124773	broad.mit.edu	36	17	55861625	55861625	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181707	exon5	c.C550T	p.L184L	.	.	.
NACA2	342538	broad.mit.edu	36	17	57022974	57022974	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199290	exon1	c.C350T	p.S117L	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57233478	57233478	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032043	exon8	c.A1058G	p.Y353C	.	.	.
EFCAB3	146779	broad.mit.edu	36	17	57837586	57837586	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173503	exon7	c.A502C	p.K168Q	.	.	.
TLK2	11011	broad.mit.edu	36	17	58009608	58009608	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006852	exon14	c.A1227C	p.E409D	.	.	.
TANC2	26115	broad.mit.edu	36	17	58530311	58530311	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025185	exon3	c.C183T	p.Y61Y	.	.	.
TANC2	26115	broad.mit.edu	36	17	58852107	58852107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025185	exon25	c.C5032A	p.Q1678K	.	.	.
TANC2	26115	broad.mit.edu	36	17	58852987	58852987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025185	exon25	c.C5912T	p.S1971F	.	.	.
DDX42	11325	broad.mit.edu	36	17	59249189	59249189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203499	exon18	c.G2516A	p.R839H	.	.	.
FTSJ3	117246	broad.mit.edu	36	17	59252718	59252718	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017647	exon16	c.C1614T	p.I538I	.	.	.
GH2	2689	broad.mit.edu	36	17	59311773	59311773	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022557	exon4	c.C547T	p.Q183X	.	.	.
GH1	2688	broad.mit.edu	36	17	59349202	59349202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000515	exon3	c.G198A	p.Q66Q	.	.	.
ICAM2	3384	broad.mit.edu	36	17	59436417	59436417	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000873	exon2	c.C110T	p.A37V	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59952692	59952692	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138363	exon10	c.T1064C	p.F355S	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61278548	61278548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon21	c.C2230T	p.R744W	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61603596	61603596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon3	c.G111A	p.R37R	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62307263	62307263	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014404	exon3	c.C411A	p.F137L	.	.	.
PSMD12	5718	broad.mit.edu	36	17	62772434	62772434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174871	exon7	c.C737T	p.A246V	.	.	.
WIPI1	55062	broad.mit.edu	36	17	63943366	63943366	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017983	exon6	c.C611T	p.A204V	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64425785	64425785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon14	c.C1925T	p.A642V	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64551411	64551411	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon6	c.T614C	p.V205A	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64595927	64595927	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon28	c.G3674T	p.R1225I	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64598932	64598932	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080284	exon26	c.A3475G	p.M1159V	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64610664	64610664	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon21	c.A2781C	p.Q927H	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64625634	64625634	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon11	c.G1495T	p.G499C	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64648430	64648430	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon2	c.A10C	p.K4Q	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64693250	64693250	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon21	c.G2460T	p.K820N	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64701565	64701565	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon14	c.G1506T	p.K502N	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6472550	6472550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon3	c.G329T	p.R110L	.	.	.
KCNJ16	3773	broad.mit.edu	36	17	65640901	65640901	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018658	exon5	c.C1078T	p.R360X	.	.	.
KCNJ2	3759	broad.mit.edu	36	17	65683819	65683819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000891	exon2	c.C1044T	p.Y348Y	.	.	.
SOX9	6662	broad.mit.edu	36	17	67630526	67630526	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000346	exon2	c.A503G	p.D168G	.	.	.
SSTR2	6752	broad.mit.edu	36	17	68677523	68677523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001050	exon2	c.G470A	p.R157Q	.	.	.
COG1	9382	broad.mit.edu	36	17	68705129	68705129	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018714	exon4	c.C912T	p.A304A	.	.	.
COG1	9382	broad.mit.edu	36	17	68714950	68714950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018714	exon13	c.G2765A	p.R922Q	.	.	.
CD300LB	124599	broad.mit.edu	36	17	70033702	70033702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174892	exon2	c.C261T	p.C87C	.	.	.
FDXR	2232	broad.mit.edu	36	17	70372647	70372647	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024417	exon7	c.G611T	p.R204I	.	.	.
OTOP3	347741	broad.mit.edu	36	17	70457093	70457093	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178233	exon7	c.A1778G	p.Y593C	.	.	.
C17orf28	283987	broad.mit.edu	36	17	70461332	70461332	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030630	exon15	c.A1874C	p.K625T	.	.	.
GGA3	23163	broad.mit.edu	36	17	70748668	70748668	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014001	exon10	c.T913G	p.L305V	.	.	.
MIF4GD	57409	broad.mit.edu	36	17	70777799	70777799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020679	exon2	c.G73A	p.A25T	.	.	.
CLDN7	1366	broad.mit.edu	36	17	7104879	7104879	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185022	exon3	c.A373C	p.I125L	.	.	.
UNK	85451	broad.mit.edu	36	17	71320805	71320805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080419	exon6	c.C902T	p.P301L	.	.	.
ACOX1	51	broad.mit.edu	36	17	71481337	71481337	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007292	exon3	c.A394G	p.I132V	.	.	.
GPS2	2874	broad.mit.edu	36	17	7158400	7158400	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004489	exon4	c.A251G	p.H84R	.	.	.
UBE2O	63893	broad.mit.edu	36	17	71903528	71903528	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022066	exon15	c.C2819A	p.S940Y	.	.	.
RHBDF2	79651	broad.mit.edu	36	17	71987569	71987569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024599	exon4	c.C200T	p.A67V	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7340913	7340913	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000937	exon5	c.T644G	p.L215R	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73559109	73559109	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018996	exon4	c.C2371G	p.P791A	.	.	.
USP36	57602	broad.mit.edu	36	17	74311297	74311297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025090	exon16	c.G2575A	p.A859T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7604889	7604889	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon17	c.G2892T	p.E964D	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7663267	7663267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon71	c.G10831A	p.A3611T	.	.	.
BAIAP2	10458	broad.mit.edu	36	17	76646337	76646337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006340	exon3	c.C192T	p.S64S	.	.	.
TBCD	6904	broad.mit.edu	36	17	78460459	78460459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005993	exon22	c.C1993T	p.R665C	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8075507	8075507	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025099	exon15	c.A2481T	p.P827P	.	.	.
MYH10	4628	broad.mit.edu	36	17	8365164	8365164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005964	exon16	c.C2029T	p.R677C	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8667087	8667087	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010855	exon15	c.T1668G	p.I556M	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9745041	9745041	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002903	exon2	c.G483T	p.K161N	.	.	.
GAS7	8522	broad.mit.edu	36	17	9778245	9778245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003644	exon5	c.C428T	p.A143V	.	.	.
TUBB6	84617	broad.mit.edu	36	18	12315539	12315539	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032525	exon4	c.C751T	p.R251C	.	.	.
AFG3L2	10939	broad.mit.edu	36	18	12327411	12327411	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006796	exon16	c.C2104T	p.R702X	.	.	.
SPIRE1	56907	broad.mit.edu	36	18	12525482	12525482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020148	exon4	c.C722T	p.A241V	.	.	.
CEP192	55125	broad.mit.edu	36	18	13039508	13039508	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon16	c.T2718G	p.S906R	.	.	.
RNMT	8731	broad.mit.edu	36	18	13721677	13721677	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003799	exon3	c.A161G	p.D54G	.	.	.
ZNF519	162655	broad.mit.edu	36	18	14095588	14095588	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145287	exon3	c.G951A	p.E317E	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17407904	17407904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052911	exon4	c.G899A	p.R300Q	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17408097	17408097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052911	exon4	c.G706A	p.E236K	.	.	.
RBBP8	5932	broad.mit.edu	36	18	18860148	18860148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203291	exon19	c.C2641T	p.R881C	.	.	.
NPC1	4864	broad.mit.edu	36	18	19372555	19372555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000271	exon20	c.G2990A	p.R997K	.	.	.
NPC1	4864	broad.mit.edu	36	18	19388922	19388922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000271	exon9	c.G1351A	p.E451K	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19587701	19587701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198129	exon6	c.G874A	p.D292N	.	.	.
CABYR	26256	broad.mit.edu	36	18	19990335	19990335	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153768	exon3	c.T818C	p.V273A	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21060198	21060198	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.C1682A	p.S561Y	.	.	.
PSMA8	143471	broad.mit.edu	36	18	21978530	21978530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144662	exon2	c.C112T	p.R38X	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750921	22750921	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031422	exon6	c.A632C	p.K211T	.	.	.
CDH2	1000	broad.mit.edu	36	18	23839874	23839874	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon6	c.G784T	p.D262Y	.	.	.
DSC3	1825	broad.mit.edu	36	18	26863587	26863587	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001941	exon4	c.G360A	p.S120S	.	.	.
DSC1	1823	broad.mit.edu	36	18	26966614	26966614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004948	exon14	c.G2153T	p.R718I	.	.	.
DSG3	1830	broad.mit.edu	36	18	27295234	27295234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon8	c.G860A	p.R287Q	.	.	.
MCART2	147407	broad.mit.edu	36	18	27594257	27594257	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034172	exon1	c.C366T	p.G122G	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2767839	2767839	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon43	c.T5402G	p.F1801C	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2768215	2768215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon44	c.C5525T	p.A1842V	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2774559	2774559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon45	c.C5659T	p.R1887W	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28044484	28044484	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005925	exon10	c.C942T	p.F314F	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28049064	28049064	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005925	exon12	c.A1601G	p.D534G	.	.	.
KLHL14	57565	broad.mit.edu	36	18	28511202	28511202	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020805	exon8	c.C1678T	p.R560X	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29101173	29101173	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198995	exon13	c.T1263G	p.F421L	.	.	.
LPIN2	9663	broad.mit.edu	36	18	2927819	2927819	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014646	exon7	c.G1039A	p.E347K	.	.	.
ZNF397	84307	broad.mit.edu	36	18	31079304	31079304	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032347	exon4	c.C637T	p.R213X	.	.	.
ZSCAN30	100101467	broad.mit.edu	36	18	31087870	31087870	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112734	exon4	c.G1027A	p.D343N	.	.	.
GALNT1	2589	broad.mit.edu	36	18	31511663	31511663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020474	exon3	c.G425A	p.R142H	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3154279	3154279	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019856	exon10	c.C1498T	p.R500X	.	.	.
GALNT1	2589	broad.mit.edu	36	18	31543703	31543703	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020474	exon11	c.C1651T	p.R551X	.	.	.
ELP2	55250	broad.mit.edu	36	18	31994917	31994917	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon17	c.T1713C	p.F571F	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32543256	32543256	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon15	c.G1912A	p.E638K	.	.	.
DLGAP1	9229	broad.mit.edu	36	18	3571931	3571931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003809	exon5	c.C1001T	p.T334M	.	.	.
DLGAP1	9229	broad.mit.edu	36	18	3572185	3572185	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003809	exon5	c.G747A	p.T249T	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40785076	40785076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon4	c.G1773T	p.K591N	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40787088	40787088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon4	c.G3785A	p.R1262K	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41473735	41473735	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007163	exon7	c.C870T	p.V290V	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41500950	41500950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007163	exon13	c.C1610T	p.S537F	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41786511	41786511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon3	c.G1105A	p.D369N	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42522749	42522749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013305	exon4	c.G443A	p.R148H	.	.	.
PIAS2	9063	broad.mit.edu	36	18	42654986	42654986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173206	exon12	c.C1556T	p.S519L	.	.	.
KIAA0427	9811	broad.mit.edu	36	18	44637957	44637957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142397	exon12	c.C1534T	p.L512F	.	.	.
LIPG	9388	broad.mit.edu	36	18	45349888	45349888	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006033	exon4	c.C543T	p.F181F	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46827608	46827608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon2	c.G194A	p.G65E	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46829204	46829204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon3	c.G400A	p.E134K	.	.	.
DCC	1630	broad.mit.edu	36	18	49085995	49085995	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon13	c.T1961G	p.F654C	.	.	.
STARD6	147323	broad.mit.edu	36	18	50112190	50112190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139171	exon4	c.C305T	p.A102V	.	.	.
WDR7	23335	broad.mit.edu	36	18	52500929	52500929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon5	c.A367G	p.N123D	.	.	.
WDR7	23335	broad.mit.edu	36	18	52512945	52512945	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon10	c.T1064G	p.I355S	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53513761	53513761	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005603	exon9	c.G700T	p.E234X	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54141472	54141472	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015277	exon8	c.C439T	p.R147X	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54398713	54398713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052947	exon4	c.C275A	p.S92Y	.	.	.
MALT1	10892	broad.mit.edu	36	18	54565722	54565722	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173844	exon16	c.T2110C	p.L704L	.	.	.
CCBE1	147372	broad.mit.edu	36	18	55298441	55298441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133459	exon3	c.C222T	p.C74C	.	.	.
KIAA1468	57614	broad.mit.edu	36	18	58105670	58105670	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020854	exon26	c.T3360C	p.L1120L	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58713235	58713235	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194449	exon5	c.T2078C	p.L693S	.	.	.
TMEM200C	645369	broad.mit.edu	36	18	5880370	5880370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080209	exon1	c.G1693A	p.A565T	.	.	.
TMEM200C	645369	broad.mit.edu	36	18	5881883	5881883	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080209	exon1	c.C180A	p.I60I	.	.	.
SERPINB7	8710	broad.mit.edu	36	18	59614539	59614539	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003784	exon5	c.G396A	p.T132T	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59721454	59721454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon8	c.C1183A	p.L395I	.	.	.
SERPINB8	5271	broad.mit.edu	36	18	59801828	59801828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002640	exon5	c.G460A	p.D154N	.	.	.
CLUL1	27098	broad.mit.edu	36	18	608095	608095	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014410	exon2	c.A95T	p.E32V	.	.	.
CDH7	1005	broad.mit.edu	36	18	61662253	61662253	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004361	exon7	c.G1207T	p.D403Y	.	.	.
L3MBTL4	91133	broad.mit.edu	36	18	6231430	6231430	+	De_novo_Start_OutOfFrame	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173464	exon8	c.T479G	p.F160C	.	.	.
DSEL	92126	broad.mit.edu	36	18	63332447	63332447	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.C409A	p.P137T	.	.	.
CCDC102B	79839	broad.mit.edu	36	18	64655233	64655233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093729	exon4	c.G253A	p.A85T	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6932125	6932125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon63	c.G9181A	p.E3061K	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6975566	6975566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon38	c.C5456T	p.A1819V	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72768901	72768901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon25	c.C4439T	p.S1480L	.	.	.
ATP9B	374868	broad.mit.edu	36	18	75037816	75037816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198531	exon8	c.G794A	p.R265Q	.	.	.
RBFA	79863	broad.mit.edu	36	18	75906914	75906914	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	G	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171967	exon6	c.T718G	p.W240G	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8815986	8815986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon15	c.C4478T	p.S1493L	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9185623	9185623	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015208	exon3	c.G162T	p.E54D	.	.	.
RALBP1	10928	broad.mit.edu	36	18	9503254	9503254	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006788	exon2	c.211delA	p.K71fs	.	.	.
C18orf45	85019	broad.mit.edu	36	18	19205382	19205382	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ICAM5	7087	broad.mit.edu	36	19	10265455	10265455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003259	exon7	c.C1547T	p.A516V	.	.	.
POLR2E	5434	broad.mit.edu	36	19	1041978	1041978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002695	exon4	c.G358A	p.D120N	.	.	.
KEAP1	9817	broad.mit.edu	36	19	10461346	10461346	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203500	exon4	c.G1509T	p.M503I	.	.	.
ELAVL3	1995	broad.mit.edu	36	19	11430284	11430284	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001420	exon4	c.A476G	p.D159G	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778241	11778241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G473A	p.R158Q	.	.	.
ZNF763	284390	broad.mit.edu	36	19	11950548	11950548	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012753	exon4	c.C818A	p.S273Y	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12117780	12117780	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145233	exon4	c.C253T	p.R85X	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498432	12498432	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144976	exon4	c.G1490T	p.R497I	.	.	.
TNPO2	30000	broad.mit.edu	36	19	12690980	12690980	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136196	exon4	c.G188A	p.R63H	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13224807	13224807	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174080	exon30	c.C4867A	p.L1623M	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14690773	14690773	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032433	exon12	c.G1634A	p.R545H	.	.	.
EMR2	30817	broad.mit.edu	36	19	14744285	14744285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152920	exon5	c.C224T	p.S75L	.	.	.
OR7A5	26659	broad.mit.edu	36	19	14799387	14799387	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017506	exon1	c.T667G	p.S223A	.	.	.
SLC1A6	6511	broad.mit.edu	36	19	14933848	14933848	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005071	exon5	c.G901T	p.E301X	.	.	.
ILVBL	10994	broad.mit.edu	36	19	15091829	15091829	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006844	exon7	c.G780A	p.P260P	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15157322	15157322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000435	exon13	c.G2120A	p.G707D	.	.	.
AKAP8	10270	broad.mit.edu	36	19	15345055	15345055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005858	exon5	c.C468T	p.F156F	.	.	.
CYP4F3	4051	broad.mit.edu	36	19	15631163	15631163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199209	exon13	c.G1531A	p.G511R	.	.	.
EPS15L1	58513	broad.mit.edu	36	19	16375555	16375555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021235	exon15	c.G1615A	p.E539K	.	.	.
SLC35E1	79939	broad.mit.edu	36	19	16538453	16538453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024881	exon4	c.C646T	p.R216W	.	.	.
SLC27A1	376497	broad.mit.edu	36	19	17472658	17472658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198580	exon10	c.G1609A	p.V537M	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17610897	17610897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon24	c.G3076A	p.D1026N	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17617912	17617912	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon17	c.G2053A	p.A685T	.	.	.
FCHO1	23149	broad.mit.edu	36	19	17748057	17748057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161359	exon15	c.G1034A	p.G345D	.	.	.
JAK3	3718	broad.mit.edu	36	19	17804428	17804428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000215	exon19	c.C2580T	p.S860S	.	.	.
KIAA1683	80726	broad.mit.edu	36	19	18238387	18238387	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025249	exon3	c.G963T	p.E321D	.	.	.
COPE	11316	broad.mit.edu	36	19	18878872	18878872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007263	exon4	c.G340A	p.V114M	.	.	.
DDX49	54555	broad.mit.edu	36	19	18896498	18896498	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019070	exon8	c.G919A	p.V307M	.	.	.
NCAN	1463	broad.mit.edu	36	19	19190864	19190864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004386	exon3	c.G214T	p.D72Y	.	.	.
NCAN	1463	broad.mit.edu	36	19	19196156	19196156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004386	exon5	c.G692A	p.R231H	.	.	.
CILP2	148113	broad.mit.edu	36	19	19515086	19515086	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153221	exon7	c.G1007A	p.R336Q	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683283	19683283	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021030	exon4	c.C1807T	p.R603X	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683451	19683451	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021030	exon4	c.C1639T	p.R547X	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19766399	19766399	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145404	exon3	c.C1201T	p.L401F	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21267953	21267953	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021269	exon4	c.G1655T	p.R552I	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21784131	21784131	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003423	exon4	c.T548G	p.F183C	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947938	21947938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007153	exon4	c.C1738T	p.P580S	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366767	22366767	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.A1110G	p.R370R	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22638881	22638881	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020855	exon4	c.T570G	p.I190M	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732342	22732342	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080409	exon5	c.G1936T	p.E646X	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732889	22732889	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon5	c.A1389C	p.K463N	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23335672	23335672	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003430	exon4	c.G1949T	p.R650I	.	.	.
MIER2	54531	broad.mit.edu	36	19	278988	278988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017550	exon4	c.G245A	p.S82N	.	.	.
ZNF556	80032	broad.mit.edu	36	19	2828779	2828779	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024967	exon4	c.C823T	p.R275X	.	.	.
ZNF556	80032	broad.mit.edu	36	19	2829237	2829237	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024967	exon4	c.C1281T	p.C427C	.	.	.
THEG	51298	broad.mit.edu	36	19	318160	318160	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199202	exon6	c.A746C	p.K249T	.	.	.
CCNE1	898	broad.mit.edu	36	19	35004856	35004856	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057182	exon7	c.A774C	p.Q258H	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35188445	35188445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003796	exon6	c.C507T	p.F169F	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35626676	35626676	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014717	exon2	c.G367A	p.D123N	.	.	.
ZFR2	23217	broad.mit.edu	36	19	3764930	3764930	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015174	exon14	c.C2130T	p.V710V	.	.	.
WDR88	126248	broad.mit.edu	36	19	38315031	38315031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173479	exon1	c.C116T	p.A39V	.	.	.
EEF2	1938	broad.mit.edu	36	19	3929065	3929065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001961	exon12	c.C1819T	p.R607W	.	.	.
LSM14A	26065	broad.mit.edu	36	19	39404427	39404427	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114093	exon9	c.C1312T	p.R438C	.	.	.
ZBTB7A	51341	broad.mit.edu	36	19	4005020	4005020	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015898	exon2	c.A1211G	p.H404R	.	.	.
CD22	933	broad.mit.edu	36	19	40515479	40515479	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185100	exon3	c.G224T	p.R75I	.	.	.
CD22	933	broad.mit.edu	36	19	40527851	40527851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185100	exon11	c.C2190A	p.F730L	.	.	.
MLL4	9757	broad.mit.edu	36	19	40903059	40903059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon3	c.G970A	p.E324K	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40970108	40970108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052948	exon21	c.C2318T	p.S773L	.	.	.
CAPNS1	826	broad.mit.edu	36	19	41332357	41332357	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001749	exon10	c.A759C	p.Q253H	.	.	.
ZNF260	339324	broad.mit.edu	36	19	41696875	41696875	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166037	exon3	c.T1106G	p.F369C	.	.	.
ZNF461	92283	broad.mit.edu	36	19	41821925	41821925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153257	exon6	c.C1162T	p.R388W	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42002290	42002290	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206894	exon5	c.C796A	p.H266N	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42133208	42133208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198539	exon7	c.G1313A	p.R438Q	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42311637	42311637	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144689	exon5	c.G1904T	p.R635I	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335168	42335168	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G1308T	p.E436D	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42747521	42747521	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016536	exon4	c.G1649T	p.R550I	.	.	.
STAP2	55620	broad.mit.edu	36	19	4284981	4284981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013841	exon2	c.C163T	p.R55W	.	.	.
STAP2	55620	broad.mit.edu	36	19	4289660	4289660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013841	exon1	c.C91T	p.P31S	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42921324	42921324	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172691	exon5	c.A1901C	p.K634T	.	.	.
PSMD8	5714	broad.mit.edu	36	19	43557406	43557406	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002812	exon1	c.C325A	p.L109I	.	.	.
RYR1	6261	broad.mit.edu	36	19	43694609	43694609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon62	c.C9230T	p.A3077V	.	.	.
RYR1	6261	broad.mit.edu	36	19	43768594	43768594	+	Silent	SNP	C	T	T	rs2302297	byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon103	c.C14877T	p.I4959I	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44656867	44656867	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003169	exon26	c.G2805A	p.S935S	.	.	.
LGALS14	56891	broad.mit.edu	36	19	44889114	44889114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020129	exon2	c.C53T	p.S18L	.	.	.
CLC	1178	broad.mit.edu	36	19	44916804	44916804	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001828	exon3	c.G262T	p.E88X	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45100262	45100262	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon8	c.T4417C	p.S1473P	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45213491	45213491	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G2474T	p.R825I	.	.	.
AKT2	208	broad.mit.edu	36	19	45432834	45432834	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon13	c.G1324T	p.E442X	.	.	.
PLD3	23646	broad.mit.edu	36	19	45572321	45572321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031696	exon10	c.G973A	p.A325T	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45695250	45695250	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020971	exon7	c.A683G	p.D228G	.	.	.
LTBP4	8425	broad.mit.edu	36	19	45825548	45825548	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042545	exon29	c.A4464C	p.S1488S	.	.	.
NUMBL	9253	broad.mit.edu	36	19	45878778	45878778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004756	exon6	c.G424A	p.E142K	.	.	.
HNRNPUL1	11100	broad.mit.edu	36	19	46479019	46479019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144732	exon7	c.C698T	p.A233V	.	.	.
CCDC97	90324	broad.mit.edu	36	19	46517422	46517422	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052848	exon3	c.C606T	p.T202T	.	.	.
CEACAM4	1089	broad.mit.edu	36	19	46819946	46819946	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001817	exon3	c.G460A	p.A154T	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47165547	47165547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152296	exon19	c.C2568A	p.F856L	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47249869	47249869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002088	exon9	c.G1109A	p.R370K	.	.	.
ZNF574	64763	broad.mit.edu	36	19	47277120	47277120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022752	exon2	c.G2522A	p.R841H	.	.	.
LIPE	3991	broad.mit.edu	36	19	47603688	47603688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005357	exon5	c.G1752A	p.T584T	.	.	.
CEACAM1	634	broad.mit.edu	36	19	47723085	47723085	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001712	exon2	c.C372A	p.V124V	.	.	.
CEACAM8	1088	broad.mit.edu	36	19	47784927	47784927	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001816	exon4	c.T807C	p.Y269Y	.	.	.
CEACAM8	1088	broad.mit.edu	36	19	47785018	47785018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001816	exon4	c.C716T	p.A239V	.	.	.
PSG3	5671	broad.mit.edu	36	19	47925259	47925259	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021016	exon5	c.A1099G	p.T367A	.	.	.
PSG8	440533	broad.mit.edu	36	19	47950379	47950379	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130168	exon4	c.C823T	p.R275C	.	.	.
PSG4	5672	broad.mit.edu	36	19	48390506	48390506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002780	exon5	c.G1069A	p.E357K	.	.	.
PSG4	5672	broad.mit.edu	36	19	48399928	48399928	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002780	exon2	c.G380A	p.R127Q	.	.	.
PSG4	5672	broad.mit.edu	36	19	48400009	48400009	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002780	exon2	c.G299T	p.R100I	.	.	.
PSG9	5678	broad.mit.edu	36	19	48458100	48458100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002784	exon3	c.G461A	p.S154N	.	.	.
KCNN4	3783	broad.mit.edu	36	19	48976737	48976737	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002250	exon1	c.C117A	p.L39L	.	.	.
LYPD5	284348	broad.mit.edu	36	19	48995701	48995701	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182573	exon2	c.A61G	p.T21A	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043403	49043403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G810A	p.K270K	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49044197	49044197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G1604A	p.R535K	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49044449	49044449	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G1856T	p.R619I	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49162751	49162751	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013359	exon6	c.A1257C	p.Q419H	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228221	49228221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013360	exon4	c.G554A	p.S185N	.	.	.
ZNF234	10780	broad.mit.edu	36	19	49352696	49352696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006630	exon6	c.G687T	p.E229D	.	.	.
ZNF227	7770	broad.mit.edu	36	19	49424512	49424512	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182490	exon4	c.G134T	p.R45M	.	.	.
ZNF235	9310	broad.mit.edu	36	19	49483627	49483627	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004234	exon5	c.T1801C	p.C601R	.	.	.
ZNF235	9310	broad.mit.edu	36	19	49483771	49483771	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004234	exon5	c.A1657C	p.N553H	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49523594	49523594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013380	exon4	c.G2556T	p.E852D	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49584060	49584060	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152354	exon4	c.T187C	p.L63L	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49672772	49672772	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.G1766T	p.S589I	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49672955	49672955	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.A1583C	p.K528T	.	.	.
CLASRP	11129	broad.mit.edu	36	19	50265936	50265936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007056	exon21	c.G2018A	p.R673Q	.	.	.
FOSB	2354	broad.mit.edu	36	19	50666335	50666335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006732	exon3	c.G491A	p.R164Q	.	.	.
EML2	24139	broad.mit.edu	36	19	50809728	50809728	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193269	exon20	c.T2109G	p.T703T	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52115048	52115048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004491	exon1	c.G1276A	p.E426K	.	.	.
GPR77	27202	broad.mit.edu	36	19	52536026	52536026	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018485	exon2	c.G130A	p.A44T	.	.	.
SLC8A2	6543	broad.mit.edu	36	19	52652542	52652542	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015063	exon3	c.G797A	p.S266N	.	.	.
EHD2	30846	broad.mit.edu	36	19	52931545	52931545	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014601	exon5	c.G1023T	p.K341N	.	.	.
SULT2A1	6822	broad.mit.edu	36	19	53078668	53078668	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003167	exon2	c.C323A	p.S108Y	.	.	.
CARD8	22900	broad.mit.edu	36	19	53406788	53406788	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014959	exon12	c.G1455T	p.Q485H	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53474873	53474873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153608	exon3	c.C5T	p.S2F	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53609644	53609644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000836	exon5	c.G1403A	p.R468Q	.	.	.
RASIP1	54922	broad.mit.edu	36	19	53919981	53919981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017805	exon9	c.G2176A	p.A726T	.	.	.
PPFIA3	8541	broad.mit.edu	36	19	54343261	54343261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003660	exon24	c.G2945A	p.R982Q	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55147398	55147398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135163	exon8	c.C1429T	p.L477F	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55154136	55154136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135163	exon6	c.G1068T	p.E356D	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55241344	55241344	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006656	exon5	c.G1832T	p.R611I	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55857217	55857217	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon23	c.C6303T	p.F2101F	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55881318	55881318	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon20	c.C2565A	p.F855L	.	.	.
SAFB	6294	broad.mit.edu	36	19	5605190	5605190	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002967	exon12	c.C1645T	p.R549X	.	.	.
KLK4	9622	broad.mit.edu	36	19	56103447	56103447	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004917	exon4	c.G592T	p.D198Y	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56608883	56608883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171157	exon9	c.G1431A	p.K477K	.	.	.
CEACAM18	729767	broad.mit.edu	36	19	56676702	56676702	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080405	exon4	c.G827T	p.R276I	.	.	.
SIGLEC14	100049587	broad.mit.edu	36	19	56839096	56839096	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098612	exon5	c.C760T	p.R254W	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188546	57188546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198480	exon6	c.G1595A	p.R532Q	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57189749	57189749	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198480	exon6	c.A392G	p.D131G	.	.	.
ZNF534	147658	broad.mit.edu	36	19	57633136	57633136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143939	exon4	c.G650A	p.R217H	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750045	57750045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039886	exon5	c.C2064T	p.F688F	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57809127	57809127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105552	exon4	c.G503A	p.R168H	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57901532	57901532	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.T381G	p.I127M	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57961730	57961730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.G1091T	p.G364V	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57961940	57961940	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.G881T	p.R294I	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57996558	57996558	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006969	exon4	c.G352T	p.E118X	.	.	.
ZNF468	90333	broad.mit.edu	36	19	58035996	58035996	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199132	exon5	c.G1204A	p.A402T	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58145059	58145059	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031665	exon5	c.A1781C	p.K594T	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58146380	58146380	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031665	exon5	c.G460A	p.D154N	.	.	.
ZNF765	91661	broad.mit.edu	36	19	58602904	58602904	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040185	exon4	c.A284G	p.H95R	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59093108	59093108	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon10	c.G1023A	p.A341A	.	.	.
RPS9	6203	broad.mit.edu	36	19	59401983	59401983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013	exon4	c.G248A	p.R83H	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59450538	59450538	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081442	exon6	c.A1127G	p.H376R	.	.	.
LILRB2	10288	broad.mit.edu	36	19	59475958	59475958	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080978	exon3	c.C43A	p.L15M	.	.	.
RFX2	5990	broad.mit.edu	36	19	5967273	5967273	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000635	exon7	c.C607T	p.L203L	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59834873	59834873	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081639	exon4	c.T181C	p.Y61H	.	.	.
KIR2DL3	3804	broad.mit.edu	36	19	59947065	59947065	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015868	exon4	c.G381T	p.E127D	.	.	.
KIR3DL2	3812	broad.mit.edu	36	19	60057226	60057226	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006737	exon4	c.G568T	p.A190S	.	.	.
GP6	51206	broad.mit.edu	36	19	60217983	60217983	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083899	exon8	c.G1142A	p.R381Q	.	.	.
ZNF581	51545	broad.mit.edu	36	19	60848038	60848038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016535	exon2	c.G289A	p.E97K	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60936120	60936120	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176820	exon2	c.G889T	p.G297X	.	.	.
NLRP11	204801	broad.mit.edu	36	19	60988903	60988903	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon12	c.C3002A	p.S1001X	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61012715	61012715	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon5	c.A1073G	p.D358G	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061168	61061168	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.G597A	p.T199T	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61114987	61114987	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176810	exon5	c.G2008T	p.E670X	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61173874	61173874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176811	exon6	c.C2534T	p.S845L	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61207001	61207001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153447	exon2	c.C170T	p.S57L	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230586	61230586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153447	exon7	c.G1175A	p.R392H	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6134180	6134180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030924	exon10	c.G1219A	p.E407K	.	.	.
ZNF582	147948	broad.mit.edu	36	19	61587362	61587362	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144690	exon5	c.A1236G	p.V412V	.	.	.
ZNF667	63934	broad.mit.edu	36	19	61644594	61644594	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022103	exon5	c.A1582G	p.T528A	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61727702	61727702	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.A454G	p.T152A	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728616	61728616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.G1368T	p.E456D	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757022	61757022	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020828	exon8	c.T1056C	p.G352G	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61978353	61978353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146326	exon12	c.C1099A	p.L367I	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61978506	61978506	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146326	exon12	c.A946G	p.T316A	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019007	62019007	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.G2615A	p.R872Q	.	.	.
USP29	57663	broad.mit.edu	36	19	62331929	62331929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020903	exon4	c.C74T	p.A25V	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338996	62338996	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon5	c.A521C	p.K174T	.	.	.
AURKC	6795	broad.mit.edu	36	19	62438440	62438440	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003160	exon7	c.T671G	p.F224C	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62554855	62554855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020657	exon1	c.C11T	p.A4V	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62710548	62710548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198542	exon4	c.C1273T	p.R425C	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62810241	62810241	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020880	exon3	c.T1536G	p.V512V	.	.	.
ZSCAN4	201516	broad.mit.edu	36	19	62879575	62879575	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152677	exon3	c.A250G	p.I84V	.	.	.
ZNF776	284309	broad.mit.edu	36	19	62957740	62957740	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173632	exon3	c.G1430A	p.R477Q	.	.	.
ZNF552	79818	broad.mit.edu	36	19	63011588	63011588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024762	exon3	c.C856T	p.H286Y	.	.	.
ZNF418	147686	broad.mit.edu	36	19	63129781	63129781	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133460	exon4	c.G1580A	p.R527Q	.	.	.
ZNF418	147686	broad.mit.edu	36	19	63130959	63130959	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133460	exon4	c.G402T	p.E134D	.	.	.
ZNF606	80095	broad.mit.edu	36	19	63183018	63183018	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025027	exon7	c.G842T	p.R281I	.	.	.
RPS5	6193	broad.mit.edu	36	19	63597744	63597744	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009	exon5	c.C516T	p.C172C	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63637778	63637778	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003433	exon3	c.A845C	p.K282T	.	.	.
KHSRP	8570	broad.mit.edu	36	19	6367504	6367504	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003685	exon14	c.C1485T	p.I495I	.	.	.
SLC27A5	10998	broad.mit.edu	36	19	63713132	63713132	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012254	exon3	c.G951T	p.K317N	.	.	.
C3	718	broad.mit.edu	36	19	6629419	6629419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon39	c.G4678A	p.E1560K	.	.	.
VAV1	7409	broad.mit.edu	36	19	6787549	6787549	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005428	exon20	c.G1884A	p.T628T	.	.	.
INSR	3643	broad.mit.edu	36	19	7093885	7093885	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon12	c.C2484T	p.D828D	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7531590	7531590	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166111	exon31	c.C3786A	p.V1262V	.	.	.
FBN3	84467	broad.mit.edu	36	19	8058995	8058995	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032447	exon51	c.G6445A	p.E2149K	.	.	.
HNRNPM	4670	broad.mit.edu	36	19	8459661	8459661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005968	exon16	c.G2116A	p.E706K	.	.	.
ZNF699	374879	broad.mit.edu	36	19	9268378	9268378	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198535	exon5	c.T702G	p.F234L	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385570	9385570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006631	exon11	c.G1031A	p.R344Q	.	.	.
ZNF426	79088	broad.mit.edu	36	19	9500822	9500822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024106	exon8	c.G899A	p.R300Q	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9538130	9538130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008727	exon4	c.G659A	p.R220Q	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9538364	9538364	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008727	exon4	c.A425C	p.K142T	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729764	9729764	+	Missense_Mutation	SNP	C	T	T	rs60387559	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077624	exon6	c.G989A	p.R330Q	.	.	.
AGL	178	broad.mit.edu	36	1	100100561	100100561	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000645	exon2	c.G403T	p.E135X	.	.	.
CDC14A	8556	broad.mit.edu	36	1	100700809	100700809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033312	exon9	c.G622A	p.A208T	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100969620	100969620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199834	exon6	c.G1297A	p.E433K	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100976414	100976414	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199834	exon9	c.A2021C	p.K674T	.	.	.
OLFM3	118427	broad.mit.edu	36	1	102063191	102063191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058170	exon4	c.C571T	p.R191C	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10285832	10285832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183416	exon21	c.G2002A	p.D668N	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103128647	103128647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon58	c.G4304A	p.G1435E	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10638350	10638350	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079843	exon9	c.C1608T	p.S536S	.	.	.
VAV3	10451	broad.mit.edu	36	1	107947271	107947271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006113	exon23	c.G2053A	p.E685K	.	.	.
VAV3	10451	broad.mit.edu	36	1	108093169	108093169	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006113	exon15	c.T1446G	p.F482L	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108480934	108480934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013386	exon10	c.G1298A	p.R433Q	.	.	.
PRPF38B	55119	broad.mit.edu	36	1	109043626	109043626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018061	exon6	c.C1102T	p.R368C	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109596929	109596929	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001408	exon1	c.G2705A	p.R902H	.	.	.
MYBPHL	343263	broad.mit.edu	36	1	109641040	109641040	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010985	exon5	c.C618A	p.V206V	.	.	.
SYPL2	284612	broad.mit.edu	36	1	109822088	109822088	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040709	exon5	c.C582A	p.C194X	.	.	.
GPR61	83873	broad.mit.edu	36	1	109887351	109887351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031936	exon2	c.G184A	p.A62T	.	.	.
GNAT2	2780	broad.mit.edu	36	1	109950561	109950561	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005272	exon5	c.G482A	p.R161Q	.	.	.
GSTM2	2946	broad.mit.edu	36	1	110015516	110015516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000848	exon6	c.C445A	p.L149I	.	.	.
FAM40A	85369	broad.mit.edu	36	1	110395881	110395881	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033088	exon20	c.A2115C	p.K705N	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11059496	11059496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001998	exon17	c.C1976T	p.T659M	.	.	.
MTOR	2475	broad.mit.edu	36	1	11097043	11097043	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon53	c.C7219T	p.L2407L	.	.	.
MTOR	2475	broad.mit.edu	36	1	11196141	11196141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon21	c.C3187T	p.L1063F	.	.	.
CTTNBP2NL	55917	broad.mit.edu	36	1	112800563	112800563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018704	exon6	c.C926T	p.S309F	.	.	.
MAGI3	260425	broad.mit.edu	36	1	113986057	113986057	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152900	exon10	c.C1362T	p.G454G	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114284902	114284902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198268	exon2	c.G374A	p.R125Q	.	.	.
OLFML3	56944	broad.mit.edu	36	1	114324603	114324603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020190	exon2	c.G241A	p.D81N	.	.	.
OLFML3	56944	broad.mit.edu	36	1	114325820	114325820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020190	exon3	c.G1127A	p.R376H	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114969720	114969720	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198459	exon2	c.T409G	p.S137A	.	.	.
AMPD1	270	broad.mit.edu	36	1	115017319	115017319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000036	exon16	c.G2282A	p.R761H	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115069471	115069471	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130523	exon15	c.C1692A	p.F564L	.	.	.
PTCHD2	57540	broad.mit.edu	36	1	11517750	11517750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020780	exon19	c.G3631A	p.V1211M	.	.	.
SLC22A15	55356	broad.mit.edu	36	1	116371040	116371040	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018420	exon5	c.C602T	p.S201L	.	.	.
C1orf161	126868	broad.mit.edu	36	1	116472354	116472354	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152367	exon6	c.G726A	p.E242E	.	.	.
CD101	9398	broad.mit.edu	36	1	117362469	117362469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004258	exon6	c.G1781A	p.R594Q	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117500945	117500945	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024626	exon3	c.G219A	p.K73K	.	.	.
WDR3	10885	broad.mit.edu	36	1	118301281	118301281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006784	exon25	c.G2521A	p.E841K	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118317615	118317615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon44	c.C6097A	p.H2033N	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118383447	118383447	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon23	c.C3310A	p.L1104I	.	.	.
HSD3B1	3283	broad.mit.edu	36	1	119858497	119858497	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000862	exon4	c.C828T	p.F276F	.	.	.
AADACL3	126767	broad.mit.edu	36	1	12707859	12707859	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103169	exon3	c.A152G	p.D51G	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12778195	12778195	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023013	exon4	c.G888T	p.E296D	.	.	.
HNRNPCL1	343069	broad.mit.edu	36	1	12830231	12830231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013631	exon2	c.C499T	p.R167W	.	.	.
PRAMEF8	391002	broad.mit.edu	36	1	12902448	12902448	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012277	exon3	c.G1053T	p.Q351H	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13931897	13931897	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012231	exon4	c.A164C	p.K55T	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144236437	144236437	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003637	exon1	c.C15T	p.F5F	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144248799	144248799	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003637	exon20	c.C2452T	p.R818X	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144272269	144272269	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon9	c.G769T	p.D257Y	.	.	.
TARS2	80222	broad.mit.edu	36	1	148743481	148743481	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025150	exon14	c.G1664T	p.G555V	.	.	.
FAM63A	55793	broad.mit.edu	36	1	149241276	149241276	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018379	exon3	c.C442A	p.L148I	.	.	.
FLG	2312	broad.mit.edu	36	1	150552463	150552463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C1523T	p.A508V	.	.	.
FLG2	388698	broad.mit.edu	36	1	150592707	150592707	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014342	exon3	c.A4179G	p.G1393G	.	.	.
FLG2	388698	broad.mit.edu	36	1	150596324	150596324	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014342	exon3	c.C562A	p.H188N	.	.	.
LCE2A	353139	broad.mit.edu	36	1	150938154	150938154	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178428	exon2	c.C153T	p.C51C	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999054	150999054	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025231	exon2	c.C366T	p.C122C	.	.	.
LCE1F	353137	broad.mit.edu	36	1	151015648	151015648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178354	exon1	c.C177T	p.C59C	.	.	.
S100A7	6278	broad.mit.edu	36	1	151698000	151698000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002963	exon2	c.G114T	p.E38D	.	.	.
CRTC2	200186	broad.mit.edu	36	1	152193358	152193358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181715	exon4	c.G431A	p.R144Q	.	.	.
TPM3	7170	broad.mit.edu	36	1	152430369	152430369	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152263	exon2	c.A160G	p.T54A	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152809418	152809418	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000748	exon4	c.C316T	p.R106W	.	.	.
EFNA4	1945	broad.mit.edu	36	1	153308069	153308069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005227	exon4	c.C586T	p.R196C	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153579810	153579810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon24	c.C8212T	p.R2738W	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153584140	153584140	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon20	c.C7734T	p.D2578D	.	.	.
GON4L	54856	broad.mit.edu	36	1	154002841	154002841	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032292	exon21	c.T3047C	p.F1016S	.	.	.
RXFP4	339403	broad.mit.edu	36	1	154178163	154178163	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181885	exon1	c.C39A	p.F13L	.	.	.
ARHGEF2	9181	broad.mit.edu	36	1	154201750	154201750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162383	exon6	c.G548A	p.R183Q	.	.	.
SEMA4A	64218	broad.mit.edu	36	1	154413356	154413356	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022367	exon15	c.A2230G	p.T744A	.	.	.
SMG5	23381	broad.mit.edu	36	1	154514372	154514372	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015327	exon3	c.G265T	p.E89X	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154777206	154777206	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon23	c.G2657A	p.R886Q	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154800056	154800056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon7	c.G532A	p.E178K	.	.	.
C1orf92	149499	broad.mit.edu	36	1	155166072	155166072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144702	exon11	c.G1167T	p.E389D	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155183098	155183098	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198236	exon28	c.C2674T	p.R892X	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155783586	155783586	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031281	exon3	c.C78A	p.F26L	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156843158	156843158	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004478	exon1	c.C306A	p.F102L	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156874571	156874571	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon36	c.G5065T	p.D1689Y	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156893032	156893032	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon20	c.C2844T	p.L948L	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156919893	156919893	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon3	c.T282G	p.H94Q	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156991440	156991440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005184	exon1	c.C211A	p.L71I	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002306	157002306	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005185	exon1	c.A791G	p.K264R	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002590	157002590	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005185	exon1	c.T507C	p.C169C	.	.	.
OR6N2	81442	broad.mit.edu	36	1	157013809	157013809	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005278	exon1	c.A241C	p.M81L	.	.	.
MNDA	4332	broad.mit.edu	36	1	157078587	157078587	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002432	exon2	c.A20C	p.K7T	.	.	.
CADM3	57863	broad.mit.edu	36	1	157436209	157436209	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021189	exon9	c.A1099G	p.I367V	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157550232	157550232	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004467	exon1	c.A842G	p.H281R	.	.	.
OR10J1	26476	broad.mit.edu	36	1	157676686	157676686	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012351	exon1	c.A514G	p.T172A	.	.	.
CCDC19	25790	broad.mit.edu	36	1	158113046	158113046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012337	exon10	c.G1276A	p.E426K	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158373418	158373418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000702	exon20	c.G2813A	p.R938H	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158418430	158418430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144699	exon20	c.G2954A	p.R985Q	.	.	.
SLAMF1	6504	broad.mit.edu	36	1	158883327	158883327	+	Silent	SNP	G	A	A	rs2295612	byCluster;byFrequency;byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003037	exon1	c.C33T	p.F11F	.	.	.
CD48	962	broad.mit.edu	36	1	158917758	158917758	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001778	exon3	c.G510A	p.R170R	.	.	.
LY9	4063	broad.mit.edu	36	1	159064186	159064186	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002348	exon10	c.G1924T	p.D642Y	.	.	.
F11R	50848	broad.mit.edu	36	1	159235464	159235464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016946	exon9	c.G857A	p.R286Q	.	.	.
B4GALT3	8703	broad.mit.edu	36	1	159408648	159408648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199874	exon7	c.C901T	p.P301S	.	.	.
TOMM40L	84134	broad.mit.edu	36	1	159464077	159464077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032174	exon5	c.G304A	p.D102N	.	.	.
SPEN	23013	broad.mit.edu	36	1	16135058	16135058	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	C	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015001	exon11	c.A9736C	p.T3246P	.	.	.
HSPB7	27129	broad.mit.edu	36	1	16216174	16216174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014424	exon2	c.C315T	p.I105I	.	.	.
MAEL	84944	broad.mit.edu	36	1	165257619	165257619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032858	exon12	c.C1208T	p.S403F	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165330801	165330801	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080426	exon1	c.C91T	p.R31X	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166081617	166081617	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon18	c.G2356A	p.E786K	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166095675	166095675	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon13	c.G1431A	p.L477L	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166304230	166304230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198957	exon20	c.G2603A	p.R868Q	.	.	.
SLC19A2	10560	broad.mit.edu	36	1	167703987	167703987	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006996	exon5	c.G1351T	p.E451X	.	.	.
F5	2153	broad.mit.edu	36	1	167765613	167765613	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon16	c.A5276G	p.D1759G	.	.	.
F5	2153	broad.mit.edu	36	1	167772409	167772409	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon14	c.C4930A	p.L1644I	.	.	.
F5	2153	broad.mit.edu	36	1	167776694	167776694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon13	c.C4258A	p.L1420I	.	.	.
SELP	6403	broad.mit.edu	36	1	167848211	167848211	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003005	exon6	c.C829A	p.H277N	.	.	.
SELE	6401	broad.mit.edu	36	1	167966301	167966301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000450	exon5	c.C611A	p.S204Y	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168124563	168124563	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181093	exon2	c.G43T	p.E15X	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169201017	169201017	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025063	exon7	c.A477G	p.K159K	.	.	.
FMO3	2328	broad.mit.edu	36	1	169339711	169339711	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002294	exon3	c.G294T	p.K98N	.	.	.
FMO3	2328	broad.mit.edu	36	1	169349926	169349926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002294	exon7	c.C983T	p.A328V	.	.	.
FMO2	2327	broad.mit.edu	36	1	169429206	169429206	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001460	exon3	c.T241G	p.F81V	.	.	.
FMO4	2329	broad.mit.edu	36	1	169567531	169567531	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002022	exon6	c.C613T	p.R205X	.	.	.
FMO4	2329	broad.mit.edu	36	1	169570344	169570344	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002022	exon8	c.C998A	p.S333Y	.	.	.
DNM3	26052	broad.mit.edu	36	1	170489419	170489419	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015569	exon15	c.C1743T	p.I581I	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171769555	171769555	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon17	c.T1979A	p.I660K	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171837457	171837457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon2	c.G82A	p.E28K	.	.	.
TNN	63923	broad.mit.edu	36	1	173352727	173352727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon10	c.G2149A	p.D717N	.	.	.
TNN	63923	broad.mit.edu	36	1	173363796	173363796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon14	c.G3051A	p.M1017I	.	.	.
TNR	7143	broad.mit.edu	36	1	173601801	173601801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon11	c.G2150A	p.R717Q	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	175001582	175001582	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon15	c.A4309G	p.I1437V	.	.	.
ASTN1	460	broad.mit.edu	36	1	175259169	175259169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004319	exon7	c.G1432A	p.E478K	.	.	.
ASTN1	460	broad.mit.edu	36	1	175265487	175265487	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004319	exon5	c.C1026T	p.F342F	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175511993	175511993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021165	exon6	c.G812A	p.R271H	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175512045	175512045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021165	exon6	c.C864T	p.L288L	.	.	.
PADI6	353238	broad.mit.edu	36	1	17593133	17593133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207421	exon10	c.G1151A	p.R384Q	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176169372	176169372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033127	exon21	c.G2594A	p.R865Q	.	.	.
TOR1AIP1	26092	broad.mit.edu	36	1	178153307	178153307	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015602	exon10	c.C1062A	p.F354L	 TOR1AIP1,central_nervous_system,brain,Substitution - coding silent,0 	.	.
CEP350	9857	broad.mit.edu	36	1	178232513	178232513	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014810	exon6	c.C598T	p.R200X	.	.	.
CEP350	9857	broad.mit.edu	36	1	178331797	178331797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014810	exon36	c.C8921T	p.A2974V	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178425402	178425402	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002826	exon9	c.C1110A	p.F370L	.	.	.
XPR1	9213	broad.mit.edu	36	1	179041842	179041842	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135669	exon5	c.C469T	p.R157X	.	.	.
MR1	3140	broad.mit.edu	36	1	179284880	179284880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001531	exon3	c.C137T	p.S46L	.	.	.
MR1	3140	broad.mit.edu	36	1	179288238	179288238	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001531	exon5	c.C849T	p.C283C	.	.	.
MR1	3140	broad.mit.edu	36	1	179289342	179289342	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001531	exon6	c.T891G	p.T297T	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179946815	179946815	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon8	c.G1158T	p.W386C	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179951878	179951878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon10	c.C1305T	p.I435I	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179991145	179991145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon28	c.G3978A	p.E1326E	.	.	.
ACTL8	81569	broad.mit.edu	36	1	18022256	18022256	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030812	exon2	c.G166T	p.D56Y	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181461395	181461395	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018891	exon8	c.G983A	p.S328N	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181463345	181463345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018891	exon10	c.C1358T	p.P453L	.	.	.
SMG7	9887	broad.mit.edu	36	1	181776810	181776810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174061	exon12	c.G1238A	p.R413Q	.	.	.
FAM129A	116496	broad.mit.edu	36	1	183043836	183043836	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052966	exon10	c.C1330T	p.Q444X	.	.	.
IVNS1ABP	10625	broad.mit.edu	36	1	183533807	183533807	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006469	exon15	c.A1912C	p.K638Q	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184101498	184101498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031935	exon4	c.C501T	p.V167V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184226095	184226095	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon22	c.C3274A	p.L1092I	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184275548	184275548	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon39	c.G6094T	p.E2032X	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184326569	184326569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon64	c.G9784A	p.E3262K	.	.	.
TPR	7175	broad.mit.edu	36	1	184556171	184556171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon46	c.C6464T	p.S2155L	.	.	.
TPR	7175	broad.mit.edu	36	1	184582009	184582009	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon23	c.C2977T	p.R993C	.	.	.
PDC	5132	broad.mit.edu	36	1	184680112	184680112	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002597	exon4	c.G363C	p.K121N	.	.	.
PTGS2	5743	broad.mit.edu	36	1	184913578	184913578	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000963	exon5	c.G465T	p.K155N	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185129935	185129935	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon5	c.A347C	p.E116A	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185168541	185168541	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon8	c.T582C	p.G194G	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185174827	185174827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon9	c.G760A	p.E254K	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19039498	19039498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152232	exon6	c.G1702A	p.A568T	.	.	.
KIAA1751	85452	broad.mit.edu	36	1	1912220	1912220	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080484	exon2	c.G36A	p.E12E	.	.	.
B3GALT2	8707	broad.mit.edu	36	1	191416756	191416756	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003783	exon2	c.G560T	p.R187I	.	.	.
UBR4	23352	broad.mit.edu	36	1	19313112	19313112	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020765	exon76	c.C11242T	p.R3748X	.	.	.
UBR4	23352	broad.mit.edu	36	1	19344896	19344896	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020765	exon53	c.C7923T	p.F2641F	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194728025	194728025	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198503	exon2	c.C165A	p.N55K	.	.	.
CFH	3075	broad.mit.edu	36	1	194961029	194961029	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000186	exon12	c.C1852A	p.P618T	.	.	.
ASPM	259266	broad.mit.edu	36	1	195339995	195339995	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon18	c.T5009C	p.V1670A	.	.	.
ASPM	259266	broad.mit.edu	36	1	195365797	195365797	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon8	c.G2500T	p.E834X	.	.	.
ASPM	259266	broad.mit.edu	36	1	195379087	195379087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon3	c.G918T	p.L306F	.	.	.
CRB1	23418	broad.mit.edu	36	1	195663385	195663385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon7	c.C2307T	p.R769R	.	.	.
DENND1B	163486	broad.mit.edu	36	1	195788800	195788800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195215	exon16	c.G1215T	p.E405D	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196988087	196988087	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080921	exon27	c.T2805G	p.T935T	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196988360	196988360	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080921	exon28	c.A2856G	p.R952R	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198644760	198644760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012482	exon2	c.G697A	p.A233T	.	.	.
GPR25	2848	broad.mit.edu	36	1	199109538	199109538	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005298	exon1	c.G750A	p.E250E	.	.	.
KDM5B	10765	broad.mit.edu	36	1	200967635	200967635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006618	exon24	c.G3965A	p.R1322K	.	.	.
CHI3L1	1116	broad.mit.edu	36	1	201419474	201419474	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001276	exon5	c.G383A	p.R128H	.	.	.
CHIT1	1118	broad.mit.edu	36	1	201455017	201455017	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003465	exon9	c.C979T	p.R327W	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201935290	201935290	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon4	c.C471A	p.F157L	.	.	.
REN	5972	broad.mit.edu	36	1	202392489	202392489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000537	exon7	c.G757A	p.E253K	.	.	.
NFASC	23114	broad.mit.edu	36	1	203209146	203209146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon10	c.G1288A	p.A430T	.	.	.
NFASC	23114	broad.mit.edu	36	1	203233151	203233151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005388	exon25	c.G3013A	p.E1005K	.	.	.
RBBP5	5929	broad.mit.edu	36	1	203330709	203330709	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005057	exon13	c.G1503A	p.P501P	.	.	.
PLA2G2F	64600	broad.mit.edu	36	1	20342603	20342603	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022819	exon3	c.T247C	p.S83P	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204080581	204080581	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152491	exon4	c.C557A	p.S186Y	.	.	.
C1orf186	440712	broad.mit.edu	36	1	204406810	204406810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007544	exon5	c.G265A	p.D89N	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204718157	204718157	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193322	exon9	c.G844T	p.A282S	.	.	.
RASSF5	83593	broad.mit.edu	36	1	204797632	204797632	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182665	exon1	c.A108C	p.K36N	.	.	.
MAPKAPK2	9261	broad.mit.edu	36	1	204969041	204969041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032960	exon3	c.G458A	p.R153Q	.	.	.
IL10	3586	broad.mit.edu	36	1	205010932	205010932	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000572	exon3	c.G321A	p.A107A	.	.	.
IL10	3586	broad.mit.edu	36	1	205012377	205012377	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000572	exon1	c.C27T	p.C9C	.	.	.
CR2	1380	broad.mit.edu	36	1	205713039	205713039	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon10	c.G1870T	p.D624Y	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206273303	206273303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025179	exon28	c.G5039A	p.R1680Q	.	.	.
TRAF3IP3	80342	broad.mit.edu	36	1	208015371	208015371	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025228	exon10	c.A829C	p.N277H	.	.	.
TRAF3IP3	80342	broad.mit.edu	36	1	208018137	208018137	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025228	exon13	c.G1248A	p.L416L	.	.	.
SYT14	255928	broad.mit.edu	36	1	208340320	208340320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153262	exon6	c.G1055A	p.R352H	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209015344	209015344	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002238	exon10	c.A2000G	p.N667S	.	.	.
RCOR3	55758	broad.mit.edu	36	1	209552783	209552783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136223	exon11	c.C1174T	p.R392W	.	.	.
INTS7	25896	broad.mit.edu	36	1	210215327	210215327	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199809	exon12	c.A1472G	p.D491G	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21059552	21059552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003760	exon19	c.G2989A	p.E997K	.	.	.
PPP2R5A	5525	broad.mit.edu	36	1	210597155	210597155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199756	exon11	c.G961A	p.E321K	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212609647	212609647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005401	exon17	c.G3047A	p.R1016Q	.	.	.
USH2A	7399	broad.mit.edu	36	1	213890714	213890714	+	Missense_Mutation	SNP	C	A	A	rs12085362	byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon65	c.G14186T	p.R4729I	.	.	.
USH2A	7399	broad.mit.edu	36	1	213920167	213920167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon62	c.C12241T	p.R4081W	.	.	.
USH2A	7399	broad.mit.edu	36	1	214486925	214486925	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon13	c.A2434G	p.T812A	.	.	.
GPATCH2	55105	broad.mit.edu	36	1	215859914	215859914	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018040	exon2	c.G607T	p.E203X	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216586777	216586777	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003238	exon1	c.C111T	p.I37I	.	.	.
EPRS	2058	broad.mit.edu	36	1	218219481	218219481	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon27	c.A3811C	p.N1271H	.	.	.
EPRS	2058	broad.mit.edu	36	1	218264329	218264329	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon8	c.G843T	p.E281D	.	.	.
BPNT1	10380	broad.mit.edu	36	1	218298946	218298946	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006085	exon9	c.G790A	p.D264N	.	.	.
MARK1	4139	broad.mit.edu	36	1	218875887	218875887	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018650	exon13	c.G1366T	p.D456Y	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22040649	22040649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005529	exon70	c.G9298A	p.A3100T	.	.	.
HHIPL2	79802	broad.mit.edu	36	1	220783512	220783512	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024746	exon2	c.A964C	p.K322Q	.	.	.
MIA3	375056	broad.mit.edu	36	1	220868809	220868809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon4	c.G1624A	p.E542K	.	.	.
MIA3	375056	broad.mit.edu	36	1	220872177	220872177	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon5	c.G3217T	p.E1073X	.	.	.
MIA3	375056	broad.mit.edu	36	1	220905306	220905306	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon28	c.G5446T	p.E1816X	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243189	221243189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C1827T	p.F609F	.	.	.
CAPN2	824	broad.mit.edu	36	1	222001374	222001374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001748	exon5	c.G613A	p.E205K	.	.	.
CAPN2	824	broad.mit.edu	36	1	222009820	222009820	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001748	exon10	c.A1151G	p.N384S	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222050560	222050560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031685	exon13	c.G2304A	p.M768I	.	.	.
WDR26	80232	broad.mit.edu	36	1	222685874	222685874	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025160	exon3	c.A555G	p.L185L	.	.	.
TMEM63A	9725	broad.mit.edu	36	1	224126349	224126349	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014698	exon5	c.G294A	p.S98S	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909512	225909512	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178549	exon4	c.G1103T	p.R368I	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226536263	226536263	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon31	c.A8204G	p.H2735R	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226547712	226547712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon41	c.G10903A	p.E3635K	.	.	.
C1orf96	126731	broad.mit.edu	36	1	227529252	227529252	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145257	exon3	c.G492A	p.R164R	.	.	.
NUP133	55746	broad.mit.edu	36	1	227698367	227698367	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018230	exon7	c.G870A	p.T290T	.	.	.
C1QC	714	broad.mit.edu	36	1	22846545	22846545	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172369	exon3	c.C420A	p.F140L	.	.	.
TSNAX	7257	broad.mit.edu	36	1	229767149	229767149	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005999	exon6	c.T748G	p.L250V	.	.	.
DISC1	27185	broad.mit.edu	36	1	230020721	230020721	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164539	exon9	c.G1816A	p.D606N	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230682052	230682052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon5	c.G2029A	p.E677K	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230716802	230716802	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon1	c.G907A	p.E303K	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231298200	231298200	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon22	c.C3870T	p.V1290V	.	.	.
KDM1A	23028	broad.mit.edu	36	1	23255030	23255030	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009999	exon7	c.T902G	p.V301G	.	.	.
ARID4B	51742	broad.mit.edu	36	1	233411594	233411594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031371	exon19	c.C3005T	p.S1002L	.	.	.
TBCE	6905	broad.mit.edu	36	1	233678620	233678620	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079515	exon17	c.G1504T	p.E502X	.	.	.
LYST	1130	broad.mit.edu	36	1	233987260	233987260	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon24	c.A7003G	p.T2335A	.	.	.
NID1	4811	broad.mit.edu	36	1	234207802	234207802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon20	c.C3732T	p.I1244I	.	.	.
NID1	4811	broad.mit.edu	36	1	234255859	234255859	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon8	c.C1944A	p.I648I	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234499832	234499832	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019891	exon2	c.A188C	p.K63T	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234806211	234806211	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018072	exon22	c.T3015G	p.S1005R	.	.	.
ACTN2	88	broad.mit.edu	36	1	234969248	234969248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103	exon10	c.G900A	p.T300T	.	.	.
ACTN2	88	broad.mit.edu	36	1	234992431	234992431	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103	exon21	c.G2574A	p.Q858Q	.	.	.
ZNF436	80818	broad.mit.edu	36	1	23561370	23561370	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030634	exon3	c.C1092T	p.C364C	.	.	.
RYR2	6262	broad.mit.edu	36	1	235653148	235653148	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon12	c.G982A	p.A328T	.	.	.
RYR2	6262	broad.mit.edu	36	1	235870865	235870865	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon47	c.G7161A	p.A2387A	.	.	.
RYR2	6262	broad.mit.edu	36	1	235881384	235881384	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon51	c.A7784G	p.D2595G	.	.	.
RYR2	6262	broad.mit.edu	36	1	235885831	235885831	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon53	c.T8053G	p.Y2685D	.	.	.
RYR2	6262	broad.mit.edu	36	1	235904045	235904045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon59	c.C8617T	p.P2873S	.	.	.
KMO	8564	broad.mit.edu	36	1	239780963	239780963	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003679	exon4	c.C308A	p.S103Y	.	.	.
KMO	8564	broad.mit.edu	36	1	239818722	239818722	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003679	exon12	c.G1065A	p.A355A	.	.	.
WDR64	128025	broad.mit.edu	36	1	239941785	239941785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144625	exon8	c.G1003A	p.A335T	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242835635	242835635	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173807	exon18	c.C2319T	p.G773G	.	.	.
EFCAB2	84288	broad.mit.edu	36	1	243313610	243313610	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143943	exon6	c.G370T	p.E124X	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243832517	243832517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018012	exon6	c.C1366T	p.R456C	.	.	.
ZNF670	93474	broad.mit.edu	36	1	245267822	245267822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033213	exon4	c.G722A	p.R241H	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245654982	245654982	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004895	exon3	c.G1614T	p.E538D	.	.	.
OR13G1	441933	broad.mit.edu	36	1	245902218	245902218	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005487	exon1	c.C749A	p.S250Y	.	.	.
OR13G1	441933	broad.mit.edu	36	1	245902636	245902636	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005487	exon1	c.C331A	p.L111I	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246291120	246291120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004687	exon1	c.G514A	p.A172T	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329376	246329376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175911	exon3	c.C76A	p.L26I	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469556	246469556	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017504	exon1	c.C703T	p.R235C	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503498	246503498	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004695	exon1	c.C242G	p.A81G	.	.	.
OR2T1	26696	broad.mit.edu	36	1	246637022	246637022	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030904	exon1	c.C1104A	p.V368V	.	.	.
OR2G6	391211	broad.mit.edu	36	1	246751852	246751852	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013355	exon1	c.C282T	p.Y94Y	.	.	.
ZNF692	55657	broad.mit.edu	36	1	247114769	247114769	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193328	exon9	c.G1008A	p.K336K	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26966878	26966878	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006015	exon11	c.C2999A	p.S1000Y	.	.	.
RPA2	6118	broad.mit.edu	36	1	28113210	28113210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002946	exon2	c.C68T	p.S23F	.	.	.
PHACTR4	65979	broad.mit.edu	36	1	28690855	28690855	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023923	exon11	c.A2015C	p.K672T	.	.	.
MATN1	4146	broad.mit.edu	36	1	30962272	30962272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002379	exon4	c.G742A	p.A248T	.	.	.
LAPTM5	7805	broad.mit.edu	36	1	30979310	30979310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006762	exon8	c.G741A	p.S247S	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32032398	32032398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144569	exon11	c.G2297A	p.S766N	.	.	.
KPNA6	23633	broad.mit.edu	36	1	32408130	32408130	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012316	exon13	c.G1305A	p.S435S	.	.	.
FAM167B	84734	broad.mit.edu	36	1	32485776	32485776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032648	exon1	c.G167A	p.R56H	.	.	.
LCK	3932	broad.mit.edu	36	1	32514558	32514558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042771	exon8	c.G665A	p.R222H	.	.	.
PHC2	1912	broad.mit.edu	36	1	33593164	33593164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198040	exon7	c.C1254T	p.G418G	.	.	.
DLGAP3	58512	broad.mit.edu	36	1	35143068	35143068	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080418	exon1	c.C504A	p.S168R	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35249187	35249187	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007167	exon9	c.C1100T	p.A367V	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35597400	35597400	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005095	exon3	c.G373T	p.E125X	.	.	.
CLSPN	63967	broad.mit.edu	36	1	36002865	36002865	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190481	exon3	c.A171C	p.K57N	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36055135	36055135	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017629	exon2	c.C85T	p.R29X	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36131370	36131370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012199	exon4	c.G416A	p.R139Q	.	.	.
MTF1	4520	broad.mit.edu	36	1	38076911	38076911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005955	exon4	c.G752A	p.R251Q	.	.	.
MACF1	23499	broad.mit.edu	36	1	39572540	39572540	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.C3013A	p.L1005I	.	.	.
MACF1	23499	broad.mit.edu	36	1	39573434	39573434	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.G3907T	p.E1303X	.	.	.
PABPC4	8761	broad.mit.edu	36	1	39803599	39803599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135653	exon8	c.C1011A	p.F337L	.	.	.
RLF	6018	broad.mit.edu	36	1	40429041	40429041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012421	exon3	c.G403A	p.E135K	.	.	.
COL9A2	1298	broad.mit.edu	36	1	40550329	40550329	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001852	exon8	c.C406T	p.R136X	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40701067	40701067	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023070	exon5	c.A824C	p.K275T	.	.	.
RIMS3	9783	broad.mit.edu	36	1	40871335	40871335	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014747	exon5	c.A465G	p.P155P	.	.	.
FOXJ3	22887	broad.mit.edu	36	1	42429755	42429755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198851	exon11	c.G1157A	p.R386Q	.	.	.
WDR65	149465	broad.mit.edu	36	1	43448292	43448292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167966	exon11	c.C2047A	p.H683N	.	.	.
TIE1	7075	broad.mit.edu	36	1	43550048	43550048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005424	exon10	c.C1453T	p.R485W	.	.	.
MPL	4352	broad.mit.edu	36	1	43577638	43577638	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005373	exon4	c.C501T	p.Y167Y	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43817099	43817099	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130440	exon7	c.C600T	p.S200S	.	.	.
IPO13	9670	broad.mit.edu	36	1	44205213	44205213	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014652	exon18	c.G2548T	p.E850X	.	.	.
ATP6V0B	533	broad.mit.edu	36	1	44214361	44214361	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004047	exon3	c.G129A	p.E43E	.	.	.
PIK3R3	8503	broad.mit.edu	36	1	46281944	46281944	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003629	exon10	c.G1374A	p.S458S	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47053494	47053494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099772	exon8	c.G1044T	p.E348D	.	.	.
CMPK1	51727	broad.mit.edu	36	1	47611340	47611340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136140	exon2	c.G298A	p.V100I	.	.	.
AGBL4	84871	broad.mit.edu	36	1	48891640	48891640	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032785	exon8	c.C795T	p.I265I	.	.	.
EPS15	2060	broad.mit.edu	36	1	51640719	51640719	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159969	exon6	c.T916G	p.F306V	.	.	.
RAB3B	5865	broad.mit.edu	36	1	52215174	52215174	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002867	exon2	c.G204T	p.E68D	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52502085	52502085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007324	exon5	c.G2231A	p.R744K	.	.	.
ORC1	4998	broad.mit.edu	36	1	52613154	52613154	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190818	exon16	c.T2307G	p.N769K	.	.	.
SCP2	6342	broad.mit.edu	36	1	53288874	53288874	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193617	exon15	c.C1311A	p.F437L	.	.	.
TMEM48	55706	broad.mit.edu	36	1	54010744	54010744	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018087	exon17	c.G1807A	p.D603N	.	.	.
USP24	23358	broad.mit.edu	36	1	55386748	55386748	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015306	exon17	c.A1944G	p.K648K	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56945859	56945859	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006252	exon9	c.C1544T	p.S515F	.	.	.
DAB1	1600	broad.mit.edu	36	1	57374888	57374888	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021080	exon6	c.C222T	p.G74G	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58920347	58920347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085487	exon8	c.G957A	p.L319L	.	.	.
HOOK1	51361	broad.mit.edu	36	1	60081715	60081715	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015888	exon9	c.G645T	p.K215N	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60278243	60278243	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152377	exon5	c.C681T	p.V227V	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60293692	60293692	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152377	exon3	c.G114A	p.E38E	.	.	.
KCNAB2	8514	broad.mit.edu	36	1	6064893	6064893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199863	exon4	c.G52A	p.D18N	.	.	.
CHD5	26038	broad.mit.edu	36	1	6133694	6133694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon7	c.C979T	p.R327C	.	.	.
L1TD1	54596	broad.mit.edu	36	1	62449108	62449108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019079	exon4	c.G2074A	p.D692N	.	.	.
ROR1	4919	broad.mit.edu	36	1	64375729	64375729	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005012	exon5	c.C572A	p.S191Y	.	.	.
UBE2U	148581	broad.mit.edu	36	1	64445117	64445117	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152489	exon3	c.T231G	p.F77L	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64904363	64904363	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon16	c.C2159A	p.S720Y	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6650370	6650370	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018198	exon4	c.C364T	p.R122X	.	.	.
PDE4B	5142	broad.mit.edu	36	1	66601808	66601808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002600	exon12	c.C1250T	p.S417L	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67628310	67628310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001559	exon15	c.C1957T	p.L653F	.	.	.
RPE65	6121	broad.mit.edu	36	1	68668121	68668121	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000329	exon14	c.T1528G	p.L510V	.	.	.
DEPDC1	55635	broad.mit.edu	36	1	68717478	68717478	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114120	exon10	c.T2049C	p.L683L	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70251302	70251302	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon11	c.C1078A	p.L360I	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70277070	70277070	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon19	c.A2861G	p.D954G	.	.	.
SRSF11	9295	broad.mit.edu	36	1	70488230	70488230	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004768	exon11	c.C1030T	p.R344X	.	.	.
ANKRD13C	81573	broad.mit.edu	36	1	70501117	70501117	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030816	exon13	c.T1497C	p.D499D	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7073980	7073980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015215	exon4	c.G264A	p.E88E	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71191243	71191243	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198718	exon4	c.G1192T	p.E398X	.	.	.
FPGT	8790	broad.mit.edu	36	1	74443406	74443406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003838	exon4	c.G1087A	p.E363K	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74809878	74809878	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon14	c.G4104T	p.E1368D	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74828181	74828181	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon12	c.A1898G	p.H633R	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74828337	74828337	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon12	c.C1742A	p.S581X	.	.	.
ACADM	34	broad.mit.edu	36	1	75970941	75970941	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000016	exon3	c.T143G	p.F48C	.	.	.
RABGGTB	5876	broad.mit.edu	36	1	76030540	76030540	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004582	exon7	c.A666G	p.R222R	.	.	.
MSH4	4438	broad.mit.edu	36	1	76054701	76054701	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon6	c.A871C	p.N291H	.	.	.
MSH4	4438	broad.mit.edu	36	1	76116443	76116443	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon11	c.G1392T	p.K464N	.	.	.
ZZZ3	26009	broad.mit.edu	36	1	77814477	77814477	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015534	exon12	c.G2195A	p.R732Q	.	.	.
ZZZ3	26009	broad.mit.edu	36	1	77871321	77871321	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015534	exon5	c.A307C	p.N103H	.	.	.
USP33	23032	broad.mit.edu	36	1	77979957	77979957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015017	exon3	c.G107A	p.R36Q	.	.	.
FAM73A	374986	broad.mit.edu	36	1	78097632	78097632	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198549	exon10	c.A1161G	p.K387K	.	.	.
PER3	8863	broad.mit.edu	36	1	7810403	7810403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016831	exon17	c.C2803T	p.P935S	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78731211	78731211	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000959	exon2	c.G195A	p.S65S	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79131397	79131397	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022159	exon13	c.A1815G	p.P605P	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82222963	82222963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon18	c.C3340T	p.R1114C	.	.	.
TTLL7	79739	broad.mit.edu	36	1	84144623	84144623	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024686	exon17	c.G2104T	p.E702X	.	.	.
RERE	473	broad.mit.edu	36	1	8477752	8477752	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012102	exon11	c.C1062T	p.V354V	.	.	.
CTBS	1486	broad.mit.edu	36	1	84808954	84808954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004388	exon2	c.C215T	p.S72F	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85260426	85260426	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon11	c.T1235C	p.V412A	.	.	.
WDR63	126820	broad.mit.edu	36	1	85328496	85328496	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145172	exon8	c.T850C	p.S284P	.	.	.
BCL10	8915	broad.mit.edu	36	1	85509035	85509035	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003921	exon2	c.A200C	p.K67T	.	.	.
CYR61	3491	broad.mit.edu	36	1	85820330	85820330	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001554	exon3	c.G409T	p.E137X	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86679778	86679778	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006536	exon9	c.C1452A	p.S484S	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86711736	86711736	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001285	exon2	c.C211T	p.R71X	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86805714	86805714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012128	exon7	c.G974A	p.R325Q	.	.	.
HS2ST1	9653	broad.mit.edu	36	1	87322469	87322469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134492	exon3	c.G368A	p.R123H	.	.	.
GBP1	2633	broad.mit.edu	36	1	89294372	89294372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002053	exon8	c.C1283T	p.S428L	.	.	.
GBP2	2634	broad.mit.edu	36	1	89348042	89348042	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004120	exon10	c.A1565G	p.Y522C	.	.	.
GBP7	388646	broad.mit.edu	36	1	89388668	89388668	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207398	exon6	c.C804A	p.F268L	.	.	.
CA6	765	broad.mit.edu	36	1	8950396	8950396	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001215	exon6	c.G663A	p.T221T	.	.	.
GBP5	115362	broad.mit.edu	36	1	89507722	89507722	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134486	exon2	c.G105A	p.T35T	.	.	.
GBP6	163351	broad.mit.edu	36	1	89622249	89622249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198460	exon10	c.C1478A	p.A493D	.	.	.
GBP6	163351	broad.mit.edu	36	1	89623453	89623453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198460	exon11	c.G1739A	p.R580H	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90251312	90251312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182976	exon7	c.G854A	p.R285Q	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91950550	91950550	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195683	exon13	c.C2001A	p.F667L	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91972995	91972995	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195683	exon5	c.G494A	p.R165Q	.	.	.
BRDT	676	broad.mit.edu	36	1	92214491	92214491	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207189	exon5	c.G526T	p.E176X	.	.	.
BRDT	676	broad.mit.edu	36	1	92229371	92229371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207189	exon13	c.C2045T	p.P682L	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93455897	93455897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206886	exon14	c.G2199T	p.K733N	.	.	.
ABCA4	24	broad.mit.edu	36	1	94257828	94257828	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon36	c.C5094T	p.V1698V	.	.	.
ABCA4	24	broad.mit.edu	36	1	94270167	94270167	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000350	exon27	c.G3883T	p.E1295X	.	.	.
ABCA4	24	broad.mit.edu	36	1	94281021	94281021	+	Missense_Mutation	SNP	G	A	A	rs61750065	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon22	c.C3212T	p.S1071L	.	.	.
DPYD	1806	broad.mit.edu	36	1	97937601	97937601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000110	exon6	c.C574T	p.L192F	.	.	.
PALMD	54873	broad.mit.edu	36	1	99900489	99900489	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017734	exon2	c.C72A	p.I24I	.	.	.
C1orf212	113444	broad.mit.edu	36	1	35093710	35093710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRKACB	5567	broad.mit.edu	36	1	84414073	84414073	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C1orf200	644997	broad.mit.edu	36	1	9636425	9636425	+	Nonstop_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13082674	13082674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018327	exon10	c.C1304T	p.A435V	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13817146	13817146	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon6	c.T562G	p.L188V	.	.	.
NSFL1C	55968	broad.mit.edu	36	20	1393016	1393016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016143	exon2	c.C161T	p.S54L	.	.	.
BFSP1	631	broad.mit.edu	36	20	17427597	17427597	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161705	exon6	c.G449A	p.R150H	.	.	.
RRBP1	6238	broad.mit.edu	36	20	17588659	17588659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042576	exon3	c.C494T	p.S165L	.	.	.
C20orf79	140856	broad.mit.edu	36	20	18742607	18742607	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178483	exon1	c.G148A	p.D50N	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19513691	19513691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon5	c.C500T	p.S167L	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19610539	19610539	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon10	c.A805G	p.T269A	.	.	.
RIN2	54453	broad.mit.edu	36	20	19899535	19899535	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018993	exon6	c.C590T	p.S197L	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19964971	19964971	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon15	c.C2415A	p.I805I	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19966071	19966071	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon14	c.C2275T	p.R759X	.	.	.
XRN2	22803	broad.mit.edu	36	20	21262188	21262188	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012255	exon10	c.G865T	p.E289X	.	.	.
TGM3	7053	broad.mit.edu	36	20	2263768	2263768	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003245	exon11	c.A1649C	p.E550A	.	.	.
CST7	8530	broad.mit.edu	36	20	24887636	24887636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003650	exon3	c.C316T	p.R106C	.	.	.
PYGB	5834	broad.mit.edu	36	20	25187909	25187909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002862	exon2	c.C280T	p.R94C	.	.	.
NINL	22981	broad.mit.edu	36	20	25382140	25382140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025176	exon24	c.C4096T	p.R1366C	.	.	.
NINL	22981	broad.mit.edu	36	20	25417916	25417916	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025176	exon13	c.C1641T	p.F547F	.	.	.
VPS16	64601	broad.mit.edu	36	20	2788756	2788756	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080413	exon3	c.G199A	p.D67N	.	.	.
VPS16	64601	broad.mit.edu	36	20	2790331	2790331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080413	exon9	c.G880A	p.D294N	.	.	.
TPX2	22974	broad.mit.edu	36	20	29818052	29818052	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012112	exon5	c.G262T	p.E88X	.	.	.
PDRG1	81572	broad.mit.edu	36	20	29998000	29998000	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030815	exon4	c.G279A	p.K93K	.	.	.
POFUT1	23509	broad.mit.edu	36	20	30282446	30282446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015352	exon6	c.C899T	p.S300L	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3051213	3051213	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014948	exon3	c.C72T	p.Y24Y	.	.	.
PLUNC	51297	broad.mit.edu	36	20	31289563	31289563	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016583	exon3	c.C202A	p.L68M	.	.	.
PLUNC	51297	broad.mit.edu	36	20	31289625	31289625	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016583	exon3	c.T264C	p.L88L	.	.	.
ACSS2	55902	broad.mit.edu	36	20	32973261	32973261	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018677	exon13	c.C1479A	p.F493L	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33041561	33041561	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020884	exon21	c.G1977T	p.Q659H	.	.	.
SPAG4	6676	broad.mit.edu	36	20	33670924	33670924	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003116	exon10	c.T919C	p.F307L	.	.	.
RBM39	9584	broad.mit.edu	36	20	33768137	33768137	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004902	exon10	c.A830G	p.E277G	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34239698	34239698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012156	exon9	c.G889A	p.D297N	.	.	.
ATRN	8455	broad.mit.edu	36	20	3468891	3468891	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139322	exon3	c.C517T	p.R173C	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34878031	34878031	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080627	exon5	c.G1228T	p.D410Y	.	.	.
RBL1	5933	broad.mit.edu	36	20	35060678	35060678	+	Silent	SNP	G	A	A	rs8114297	byCluster;byFrequency;byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002895	exon22	c.C3105T	p.I1035I	.	.	.
CTNNBL1	56259	broad.mit.edu	36	20	35799260	35799260	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030877	exon3	c.A286C	p.N96H	.	.	.
KIAA1755	85449	broad.mit.edu	36	20	36280092	36280092	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029864	exon12	c.G2647A	p.A883T	.	.	.
BPI	671	broad.mit.edu	36	20	36373734	36373734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001725	exon5	c.G593A	p.R198Q	.	.	.
BPI	671	broad.mit.edu	36	20	36385765	36385765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001725	exon8	c.G848A	p.R283H	.	.	.
ACTR5	79913	broad.mit.edu	36	20	36812222	36812222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024855	exon2	c.G531T	p.K177N	.	.	.
DHX35	60625	broad.mit.edu	36	20	37072385	37072385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190809	exon12	c.G1178A	p.R393H	.	.	.
RNF24	11237	broad.mit.edu	36	20	3862823	3862823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134337	exon6	c.C334T	p.R112C	.	.	.
TOP1	7150	broad.mit.edu	36	20	39138335	39138335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003286	exon4	c.G266A	p.R89Q	.	.	.
LPIN3	64900	broad.mit.edu	36	20	39408008	39408008	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022896	exon2	c.C151A	p.R51S	.	.	.
CHD6	84181	broad.mit.edu	36	20	39513941	39513941	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon22	c.C3462A	p.F1154L	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40164273	40164273	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon27	c.C3676T	p.R1226X	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40377831	40377831	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon12	c.C2085A	p.L695L	.	.	.
C20orf111	51526	broad.mit.edu	36	20	42259570	42259570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016470	exon4	c.G415A	p.D139N	.	.	.
CSNK2A1	1457	broad.mit.edu	36	20	426371	426371	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001895	exon6	c.T420G	p.I140M	.	.	.
PABPC1L	80336	broad.mit.edu	36	20	42981240	42981240	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001124756	exon5	c.A646C	p.K216Q	.	.	.
CDH22	64405	broad.mit.edu	36	20	44272547	44272547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021248	exon6	c.C1092A	p.F364L	.	.	.
CDH22	64405	broad.mit.edu	36	20	44303223	44303223	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021248	exon2	c.C336T	p.I112I	.	.	.
PREX1	57580	broad.mit.edu	36	20	46797811	46797811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020820	exon2	c.G233A	p.R78H	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47038289	47038289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006420	exon17	c.C2318T	p.A773V	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4716358	4716358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170774	exon9	c.G734A	p.R245Q	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47862878	47862878	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015266	exon1	c.G12T	p.K4N	.	.	.
SLC23A2	9962	broad.mit.edu	36	20	4790650	4790650	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203327	exon15	c.C1568T	p.S523L	.	.	.
PTPN1	5770	broad.mit.edu	36	20	48629809	48629809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002827	exon8	c.G1027A	p.D343N	.	.	.
BCAS4	55653	broad.mit.edu	36	20	48926456	48926456	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017843	exon6	c.G613A	p.V205I	.	.	.
ADNP	23394	broad.mit.edu	36	20	48942769	48942769	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015339	exon5	c.T1889C	p.I630T	.	.	.
ADNP	23394	broad.mit.edu	36	20	48953844	48953844	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015339	exon3	c.G97T	p.E33X	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49054019	49054019	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002237	exon3	c.C1506T	p.F502F	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50135076	50135076	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199427	exon9	c.G1365A	p.A455A	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51621756	51621756	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006526	exon4	c.A3081C	p.A1027A	.	.	.
PROKR2	128674	broad.mit.edu	36	20	5230877	5230877	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144773	exon2	c.G964A	p.A322T	.	.	.
CASS4	57091	broad.mit.edu	36	20	54461113	54461113	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020356	exon5	c.G1474A	p.E492K	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54533286	54533286	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012971	exon1	c.A15C	p.K5N	.	.	.
TFAP2C	7022	broad.mit.edu	36	20	54646277	54646277	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003222	exon7	c.A1154G	p.N385S	.	.	.
BMP7	655	broad.mit.edu	36	20	55236747	55236747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001719	exon2	c.G556A	p.D186N	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55527281	55527281	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080618	exon5	c.G998A	p.R333H	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55618799	55618799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160417	exon7	c.C902T	p.S301L	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55623496	55623496	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160419	exon4	c.G355T	p.D119Y	.	.	.
CDH4	1002	broad.mit.edu	36	20	59936818	59936818	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon12	c.C1947T	p.F649F	.	.	.
TCFL5	10732	broad.mit.edu	36	20	60959332	60959332	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006602	exon4	c.C1098T	p.G366G	.	.	.
YTHDF1	54915	broad.mit.edu	36	20	61298518	61298518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017798	exon5	c.G1667A	p.R556Q	.	.	.
KCNQ2	3785	broad.mit.edu	36	20	61516719	61516719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172107	exon13	c.G1506A	p.A502A	.	.	.
MYT1	4661	broad.mit.edu	36	20	62309669	62309669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004535	exon7	c.G676A	p.E226K	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9330163	9330163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000933	exon17	c.G1537A	p.E513K	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9974268	9974268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198798	exon5	c.C743T	p.S248L	.	.	.
LIPI	149998	broad.mit.edu	36	21	14476039	14476039	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198996	exon4	c.C617A	p.A206D	.	.	.
NRIP1	8204	broad.mit.edu	36	21	15261783	15261783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003489	exon4	c.C602T	p.T201M	.	.	.
USP25	29761	broad.mit.edu	36	21	16172575	16172575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013396	exon24	c.G3078A	p.P1026P	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18692429	18692429	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon2	c.C234A	p.L78L	.	.	.
JAM2	58494	broad.mit.edu	36	21	25992984	25992984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021219	exon5	c.C519T	p.I173I	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27132164	27132164	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006988	exon9	c.A2509G	p.K837E	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27260042	27260042	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon1	c.C540T	p.R180R	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29302645	29302645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016940	exon2	c.G236A	p.R79Q	.	.	.
USP16	10600	broad.mit.edu	36	21	29341019	29341019	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001992	exon14	c.A1514C	p.K505T	.	.	.
CCT8	10694	broad.mit.edu	36	21	29363663	29363663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006585	exon3	c.G183A	p.E61E	.	.	.
BACH1	571	broad.mit.edu	36	21	29621523	29621523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206866	exon3	c.G1507A	p.D503N	.	.	.
BACH1	571	broad.mit.edu	36	21	29623722	29623722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206866	exon4	c.G1613A	p.R538Q	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29890734	29890734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000830	exon9	c.T1234C	p.Y412H	.	.	.
KRTAP19-5	337972	broad.mit.edu	36	21	30796226	30796226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181611	exon1	c.C54T	p.F18F	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31517692	31517692	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon9	c.G1896A	p.E632E	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31987612	31987612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145444	exon11	c.G1334A	p.R445Q	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32967602	32967602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003895	exon14	c.C1762T	p.R588C	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32967647	32967647	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003895	exon14	c.C1717T	p.R573X	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33783118	33783118	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040192	exon2	c.G453A	p.E151E	.	.	.
SETD4	54093	broad.mit.edu	36	21	36339780	36339780	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017438	exon6	c.G696A	p.L232L	.	.	.
HLCS	3141	broad.mit.edu	36	21	37224516	37224516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000411	exon6	c.G1084A	p.E362K	.	.	.
DSCR3	10311	broad.mit.edu	36	21	37527549	37527549	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006052	exon4	c.T416G	p.F139C	.	.	.
DYRK1A	1859	broad.mit.edu	36	21	37774880	37774880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130436	exon4	c.G371A	p.R124Q	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39525997	39525997	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033656	exon25	c.G2976A	p.E992E	.	.	.
SH3BGR	6450	broad.mit.edu	36	21	39793708	39793708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007341	exon4	c.G591T	p.K197N	.	.	.
IGSF5	150084	broad.mit.edu	36	21	40064920	40064920	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080444	exon4	c.G626T	p.S209I	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40570001	40570001	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon11	c.C2249A	p.S750X	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42286394	42286394	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098403	exon3	c.G880T	p.E294X	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42575529	42575529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207629	exon6	c.G656A	p.R219H	.	.	.
AGPAT3	56894	broad.mit.edu	36	21	44226627	44226627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020132	exon10	c.C1057T	p.R353C	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44323884	44323884	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003274	exon12	c.C1481T	p.A494V	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44766246	44766246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144991	exon9	c.C1514T	p.S505L	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44766422	44766422	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144991	exon9	c.C1338T	p.G446G	.	.	.
C21orf29	54084	broad.mit.edu	36	21	44771669	44771669	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144991	exon7	c.C1083T	p.F361F	.	.	.
C21orf57	54059	broad.mit.edu	36	21	46531409	46531409	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006114	exon2	c.A154C	p.R52R	.	.	.
TPTE	7179	broad.mit.edu	36	21	9930763	9930763	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon22	c.C1399A	p.L467I	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973240	9973240	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon9	c.T289C	p.F97L	.	.	.
OR11H1	81061	broad.mit.edu	36	22	14829709	14829709	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005239	exon1	c.C96A	p.F32L	.	.	.
XKR3	150165	broad.mit.edu	36	22	15668719	15668719	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175878	exon2	c.A245C	p.Q82P	.	.	.
CECR1	51816	broad.mit.edu	36	22	16043530	16043530	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177405	exon5	c.G480T	p.K160N	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16751995	16751995	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136004	exon13	c.G1696T	p.D566Y	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17621746	17621746	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001835	exon3	c.G255A	p.G85G	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19518862	19518862	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058004	exon3	c.C181T	p.R61W	.	.	.
SNAP29	9342	broad.mit.edu	36	22	19572113	19572113	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004782	exon5	c.C766T	p.R256X	.	.	.
UBE2L3	7332	broad.mit.edu	36	22	20295222	20295222	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003347	exon3	c.A200C	p.K67T	.	.	.
ZNF280B	140883	broad.mit.edu	36	22	21172637	21172637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080764	exon4	c.G1087A	p.E363K	.	.	.
SUSD2	56241	broad.mit.edu	36	22	22914250	22914250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019601	exon14	c.C2399T	p.A800V	.	.	.
GGT1	2678	broad.mit.edu	36	22	23340828	23340828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013430	exon6	c.G250A	p.G84S	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23631096	23631096	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098497	exon21	c.C2760T	p.I920I	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24494945	24494945	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon4	c.G1062T	p.Q354H	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24552414	24552414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon14	c.G2734A	p.A912T	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25091393	25091393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184776	exon12	c.C2463T	p.I821I	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25101560	25101560	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184776	exon13	c.G2622T	p.E874D	.	.	.
MN1	4330	broad.mit.edu	36	22	26525736	26525736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002430	exon1	c.C796T	p.P266S	.	.	.
PITPNB	23760	broad.mit.edu	36	22	26622602	26622602	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012399	exon6	c.A310C	p.K104Q	.	.	.
XBP1	7494	broad.mit.edu	36	22	27521294	27521294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079539	exon6	c.G1000A	p.D334N	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31161765	31161765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174932	exon8	c.G850A	p.E284K	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31210054	31210054	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033024	exon3	c.T351C	p.N117N	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31211061	31211061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033024	exon4	c.G415A	p.E139K	.	.	.
CACNG2	10369	broad.mit.edu	36	22	35290504	35290504	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006078	exon4	c.A812G	p.Y271C	.	.	.
C1QTNF6	114904	broad.mit.edu	36	22	35908204	35908204	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182486	exon3	c.C807T	p.S269S	.	.	.
MFNG	4242	broad.mit.edu	36	22	36206207	36206207	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166343	exon2	c.C339T	p.F113F	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36449504	36449504	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039141	exon7	c.C995T	p.A332V	.	.	.
CSNK1E	1454	broad.mit.edu	36	22	37025871	37025871	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001894	exon6	c.C711T	p.I237I	.	.	.
NPTXR	23467	broad.mit.edu	36	22	37552522	37552522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014293	exon3	c.C1027T	p.P343S	.	.	.
CBX6	23466	broad.mit.edu	36	22	37592226	37592226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014292	exon5	c.C1173T	p.F391F	.	.	.
APOBEC3G	60489	broad.mit.edu	36	22	37804950	37804950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021822	exon2	c.C85T	p.R29C	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38469819	38469819	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152512	exon7	c.G1635T	p.K545N	.	.	.
EP300	2033	broad.mit.edu	36	22	39843621	39843621	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon2	c.C579T	p.N193N	.	.	.
MEI1	150365	broad.mit.edu	36	22	40504661	40504661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152513	exon22	c.C2714T	p.S905L	.	.	.
MEI1	150365	broad.mit.edu	36	22	40510591	40510591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152513	exon26	c.G3203A	p.R1068Q	.	.	.
MEI1	150365	broad.mit.edu	36	22	40520408	40520408	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152513	exon28	c.T3515G	p.I1172S	.	.	.
MEI1	150365	broad.mit.edu	36	22	40521362	40521362	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152513	exon29	c.T3536G	p.F1179C	.	.	.
TTLL1	25809	broad.mit.edu	36	22	41772367	41772367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012263	exon10	c.G1135A	p.E379K	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44181393	44181393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148674	exon3	c.C316T	p.R106C	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45035489	45035489	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006071	exon1	c.C2395T	p.R799X	.	.	.
ARID5A	10865	broad.mit.edu	36	2	96580622	96580623	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212481	exon7	c.630_631insC	p.E210fs	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376192	100376192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004854	exon7	c.G1018A	p.E340K	.	.	.
NMS	129521	broad.mit.edu	36	2	100462247	100462247	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011717	exon6	c.T262G	p.F88V	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	101019012	101019012	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102426	exon9	c.C1458T	p.Y486Y	.	.	.
IL1RL2	8808	broad.mit.edu	36	2	102184457	102184457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003854	exon5	c.G499A	p.E167K	.	.	.
IL18RAP	8807	broad.mit.edu	36	2	102426146	102426146	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003853	exon8	c.A851G	p.N284S	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102491822	102491822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011552	exon6	c.C1486T	p.R496C	.	.	.
MFSD9	84804	broad.mit.edu	36	2	102706615	102706615	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032718	exon5	c.T613G	p.F205V	.	.	.
MRPS9	64965	broad.mit.edu	36	2	105075306	105075306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182640	exon8	c.C667T	p.R223W	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106816941	106816941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142351	exon3	c.C1037T	p.S346L	.	.	.
SULT1C3	442038	broad.mit.edu	36	2	108248160	108248160	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008743	exon7	c.T836C	p.V279A	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108736782	108736782	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006267	exon15	c.A2125C	p.N709H	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108747118	108747118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006267	exon20	c.C3691T	p.R1231C	.	.	.
SEPT10	151011	broad.mit.edu	36	2	109661019	109661019	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178584	exon9	c.G1177T	p.E393X	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110246604	110246604	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128178	exon17	c.T1583G	p.F528C	.	.	.
BUB1	699	broad.mit.edu	36	2	111148196	111148196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004336	exon3	c.G163A	p.E55K	.	.	.
FBLN7	129804	broad.mit.edu	36	2	112656947	112656947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153214	exon6	c.G779A	p.R260Q	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112798358	112798358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198581	exon10	c.G1499A	p.G500E	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113026735	113026735	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137604	exon6	c.T861G	p.F287L	.	.	.
ACTR3	10096	broad.mit.edu	36	2	114416356	114416356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005721	exon8	c.G808A	p.D270N	.	.	.
GREB1	9687	broad.mit.edu	36	2	11687664	11687664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014668	exon26	c.G4589A	p.R1530Q	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11841418	11841418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon8	c.G1169A	p.R390Q	.	.	.
CCDC93	54520	broad.mit.edu	36	2	118460045	118460045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019044	exon7	c.G590A	p.R197Q	.	.	.
C1QL2	165257	broad.mit.edu	36	2	119630979	119630979	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182528	exon2	c.G733A	p.A245T	.	.	.
TMEM37	140738	broad.mit.edu	36	2	119910965	119910965	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183240	exon2	c.C52G	p.R18G	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120549547	120549547	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184937	exon6	c.C433G	p.Q145E	.	.	.
GLI2	2736	broad.mit.edu	36	2	121456764	121456764	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005270	exon10	c.C1521T	p.F507F	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121841742	121841742	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon33	c.C3577T	p.R1193W	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125385571	125385571	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon23	c.C3710T	p.S1237L	.	.	.
ERCC3	2071	broad.mit.edu	36	2	127745427	127745427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000122	exon12	c.C1900T	p.R634C	.	.	.
MAP3K2	10746	broad.mit.edu	36	2	127792268	127792268	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006609	exon12	c.G1141T	p.E381X	.	.	.
MAP3K2	10746	broad.mit.edu	36	2	127798225	127798225	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006609	exon9	c.T740G	p.F247C	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12798347	12798347	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021643	exon3	c.G1008T	p.E336D	.	.	.
LIMS2	55679	broad.mit.edu	36	2	128113454	128113454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136037	exon11	c.G964A	p.D322N	.	.	.
SAP130	79595	broad.mit.edu	36	2	128473786	128473786	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145928	exon10	c.C1290T	p.V430V	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128607222	128607222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020120	exon14	c.C1415T	p.S472L	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130668396	130668396	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207312	exon4	c.G489T	p.K163N	.	.	.
FAM123C	205147	broad.mit.edu	36	2	131236891	131236891	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105195	exon2	c.C776T	p.S259L	.	.	.
POTEE	445582	broad.mit.edu	36	2	131692567	131692567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083538	exon1	c.G122A	p.S41N	.	.	.
CCNT2	905	broad.mit.edu	36	2	135410992	135410992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058241	exon3	c.C352T	p.L118L	.	.	.
LCT	3938	broad.mit.edu	36	2	136286657	136286657	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon7	c.C2047A	p.L683M	.	.	.
MCM6	4175	broad.mit.edu	36	2	136339083	136339083	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005915	exon7	c.C1048A	p.L350I	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137531125	137531125	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080427	exon2	c.T712G	p.F238V	.	.	.
NXPH2	11249	broad.mit.edu	36	2	139145194	139145194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007226	exon2	c.G563A	p.R188H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140721153	140721153	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon87	c.G13296T	p.K4432N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140959391	140959391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon59	c.C9416A	p.P3139H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140966721	140966721	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon57	c.T9046G	p.F3016V	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141000283	141000283	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon48	c.G7869T	p.K2623N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141015030	141015030	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon45	c.G7495T	p.E2499X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141015881	141015881	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon44	c.C7324A	p.L2442I	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141424414	141424414	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon20	c.A2996C	p.E999A	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141456297	141456297	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon18	c.A2789G	p.D930G	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873942	144873942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon7	c.G1210A	p.V404I	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144875247	144875247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon6	c.G833A	p.R278Q	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144878002	144878002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon5	c.G686A	p.R229H	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148394343	148394343	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon8	c.A1037C	p.K346T	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148397060	148397060	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon9	c.A1126C	p.N376H	.	.	.
LYPD6B	130576	broad.mit.edu	36	2	149770024	149770024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177964	exon4	c.C89T	p.S30L	.	.	.
NEB	4703	broad.mit.edu	36	2	152084508	152084508	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon154	c.C22500T	p.F7500F	.	.	.
NEB	4703	broad.mit.edu	36	2	152125856	152125856	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon123	c.G19114T	p.E6372X	.	.	.
NEB	4703	broad.mit.edu	36	2	152179276	152179276	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon77	c.G11361A	p.P3787P	.	.	.
NEB	4703	broad.mit.edu	36	2	152242459	152242459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon34	c.G3640A	p.E1214K	.	.	.
NEB	4703	broad.mit.edu	36	2	152259181	152259181	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon20	c.G1798T	p.D600Y	.	.	.
NEB	4703	broad.mit.edu	36	2	152271731	152271731	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon13	c.G1062T	p.K354N	.	.	.
ARL5A	26225	broad.mit.edu	36	2	152371681	152371681	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012097	exon5	c.G391T	p.E131X	.	.	.
CACNB4	785	broad.mit.edu	36	2	152445635	152445635	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145798	exon4	c.C315T	p.G105G	.	.	.
NBAS	51594	broad.mit.edu	36	2	15276500	15276500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon48	c.C6280T	p.P2094S	.	.	.
FMNL2	114793	broad.mit.edu	36	2	153181950	153181950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052905	exon13	c.C1312T	p.R438W	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155419716	155419716	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002239	exon3	c.A1151T	p.N384I	.	.	.
CCDC148	130940	broad.mit.edu	36	2	158874375	158874375	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138803	exon9	c.A926G	p.D309G	.	.	.
PKP4	8502	broad.mit.edu	36	2	159196591	159196591	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003628	exon8	c.A1234G	p.T412A	.	.	.
TANC1	85461	broad.mit.edu	36	2	159794649	159794649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033394	exon27	c.G4466A	p.R1489Q	.	.	.
DPP4	1803	broad.mit.edu	36	2	162583510	162583510	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001935	exon16	c.G1395A	p.A465A	.	.	.
KCNH7	90134	broad.mit.edu	36	2	162949452	162949452	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033272	exon13	c.C2954A	p.S985Y	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163101684	163101684	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon3	c.A460C	p.N154H	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631253	1631253	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon17	c.C3306A	p.F1102L	.	.	.
FIGN	55137	broad.mit.edu	36	2	164174732	164174732	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018086	exon3	c.C1856T	p.S619L	.	.	.
GRB14	2888	broad.mit.edu	36	2	165086819	165086819	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004490	exon6	c.G733T	p.E245X	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165662108	165662108	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon23	c.A4139C	p.N1380T	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165678599	165678599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon20	c.C3642A	p.F1214L	.	.	.
CSRNP3	80034	broad.mit.edu	36	2	166243690	166243690	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172173	exon7	c.C939T	p.I313I	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166619477	166619477	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165964	exon4	c.T519G	p.I173M	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166845145	166845145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon14	c.G2278A	p.E760K	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166994011	166994011	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon16	c.C2612A	p.S871X	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166997495	166997495	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon15	c.T2171G	p.F724C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167782945	167782945	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon6	c.C846T	p.C282C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167809097	167809097	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C2283T	p.F761F	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814776	167814776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C7962T	p.T2654T	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814926	167814926	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C8112T	p.F2704F	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167816121	167816121	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.T9307G	p.F3103V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823810	167823810	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon11	c.C2607A	p.F869L	.	.	.
SPC25	57405	broad.mit.edu	36	2	169442054	169442054	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020675	exon4	c.T286C	p.L96L	.	.	.
LRP2	4036	broad.mit.edu	36	2	169733326	169733326	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon61	c.C11604T	p.G3868G	.	.	.
LRP2	4036	broad.mit.edu	36	2	169756674	169756674	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon48	c.C8946T	p.Y2982Y	.	.	.
LRP2	4036	broad.mit.edu	36	2	169835770	169835770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon16	c.C2210T	p.S737L	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170314200	170314200	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199290	exon6	c.G1389A	p.P463P	.	.	.
GAD1	2571	broad.mit.edu	36	2	171394307	171394307	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon4	c.G222T	p.K74N	.	.	.
CDCA7	83879	broad.mit.edu	36	2	173932385	173932385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031942	exon3	c.G304A	p.E102K	.	.	.
CIR1	9541	broad.mit.edu	36	2	174951917	174951917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004882	exon7	c.C464T	p.S155L	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17561731	17561731	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099218	exon1	c.G1433A	p.W478X	.	.	.
HOXD1	3231	broad.mit.edu	36	2	176762902	176762902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024501	exon2	c.G773A	p.R258Q	.	.	.
GEN1	348654	broad.mit.edu	36	2	17806152	17806152	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130009	exon3	c.T170A	p.F57Y	.	.	.
GEN1	348654	broad.mit.edu	36	2	17825908	17825908	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130009	exon14	c.G1948A	p.D650N	.	.	.
MSGN1	343930	broad.mit.edu	36	2	17861587	17861587	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105569	exon1	c.C321T	p.G107G	.	.	.
RBM45	129831	broad.mit.edu	36	2	178689303	178689303	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152945	exon2	c.C369A	p.I123I	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178922212	178922212	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032523	exon12	c.A1003G	p.T335A	.	.	.
PRKRA	8575	broad.mit.edu	36	2	179017425	179017425	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139517	exon3	c.G333T	p.K111N	.	.	.
TTN	7273	broad.mit.edu	36	2	179101390	179101390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon189	c.C80038A	p.L26680I	.	.	.
TTN	7273	broad.mit.edu	36	2	179106628	179106628	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.C75764T	p.S25255L	.	.	.
TTN	7273	broad.mit.edu	36	2	179109400	179109400	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon185	c.T73124G	p.F24375C	.	.	.
TTN	7273	broad.mit.edu	36	2	179111648	179111648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon182	c.C71958T	p.N23986N	.	.	.
TTN	7273	broad.mit.edu	36	2	179137846	179137846	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G54063T	p.K18021N	.	.	.
TTN	7273	broad.mit.edu	36	2	179162506	179162506	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon132	c.A34996G	p.T11666A	.	.	.
TTN	7273	broad.mit.edu	36	2	179215266	179215266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon47	c.C13306T	p.R4436C	.	.	.
TTN	7273	broad.mit.edu	36	2	179293583	179293583	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon77	c.T19419G	p.S6473S	.	.	.
TTN	7273	broad.mit.edu	36	2	179301700	179301700	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon63	c.G15466T	p.D5156Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179305098	179305098	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon54	c.A13111G	p.M4371V	.	.	.
TTN	7273	broad.mit.edu	36	2	179324967	179324967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.C10405T	p.R3469C	.	.	.
TTN	7273	broad.mit.edu	36	2	179346318	179346318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon33	c.C7618T	p.R2540C	.	.	.
TTN	7273	broad.mit.edu	36	2	179348801	179348801	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon28	c.C6035A	p.A2012D	.	.	.
TTN	7273	broad.mit.edu	36	2	179358699	179358699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon15	c.G2386A	p.D796N	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182055500	182055500	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000885	exon9	c.T918C	p.F306F	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1822012	1822012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon21	c.C2990T	p.S997L	.	.	.
PDE1A	5136	broad.mit.edu	36	2	182761984	182761984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005019	exon11	c.C1222T	p.R408W	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187324171	187324171	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177454	exon5	c.G790T	p.E264X	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187334689	187334689	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177454	exon8	c.G1375A	p.D459N	.	.	.
CALCRL	10203	broad.mit.edu	36	2	187925270	187925270	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005795	exon13	c.T944C	p.V315A	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189608066	189608066	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon53	c.C4174A	p.L1392I	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1900069	1900069	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon11	c.T1527G	p.C509W	.	.	.
WDR75	84128	broad.mit.edu	36	2	190040523	190040523	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032168	exon14	c.C1532A	p.S511Y	.	.	.
ASNSD1	54529	broad.mit.edu	36	2	190240796	190240796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019048	exon5	c.G1526A	p.R509H	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190316318	190316318	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144708	exon21	c.G3883T	p.E1295X	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1905542	1905542	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon10	c.G1006A	p.D336N	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191937195	191937195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon11	c.G980A	p.R327Q	.	.	.
TMEFF2	23671	broad.mit.edu	36	2	192529279	192529279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016192	exon8	c.C816A	p.F272L	.	.	.
CCDC150	284992	broad.mit.edu	36	2	197294493	197294493	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080539	exon21	c.T2262C	p.I754I	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197418978	197418978	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024989	exon23	c.A2159C	p.E720A	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197574765	197574765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195144	exon22	c.C2392T	p.R798C	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197709626	197709626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153697	exon4	c.C196T	p.R66C	.	.	.
RFTN2	130132	broad.mit.edu	36	2	198188895	198188895	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144629	exon7	c.C1104T	p.F368F	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657809	198657809	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006226	exon2	c.C1323T	p.S441S	.	.	.
WDR35	57539	broad.mit.edu	36	2	20009128	20009128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006657	exon17	c.G1778A	p.R593Q	.	.	.
WDR35	57539	broad.mit.edu	36	2	20017174	20017174	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006657	exon13	c.G1335A	p.S445S	.	.	.
LAPTM4A	9741	broad.mit.edu	36	2	20098235	20098235	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014713	exon5	c.T502C	p.F168L	.	.	.
CLK1	1195	broad.mit.edu	36	2	201434220	201434220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162407	exon3	c.C502T	p.R168C	.	.	.
TRAK2	66008	broad.mit.edu	36	2	201970470	201970470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015049	exon7	c.C769T	p.R257C	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202174820	202174820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152525	exon4	c.C403T	p.R135C	.	.	.
MPP4	58538	broad.mit.edu	36	2	202223107	202223107	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033066	exon19	c.G1408A	p.E470K	.	.	.
MPP4	58538	broad.mit.edu	36	2	202260279	202260279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033066	exon5	c.C340T	p.L114F	.	.	.
ALS2	57679	broad.mit.edu	36	2	202299660	202299660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon18	c.C3154T	p.R1052C	.	.	.
ALS2	57679	broad.mit.edu	36	2	202330402	202330402	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon5	c.G1439A	p.R480Q	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203708946	203708946	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon27	c.T4028C	p.L1343S	.	.	.
RAPH1	65059	broad.mit.edu	36	2	204017887	204017887	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203365	exon15	c.C1881T	p.S627S	.	.	.
RAPH1	65059	broad.mit.edu	36	2	204062641	204062641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203365	exon4	c.G643A	p.A215T	.	.	.
NRP2	8828	broad.mit.edu	36	2	206318720	206318720	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201266	exon10	c.C1647T	p.F549F	.	.	.
NRP2	8828	broad.mit.edu	36	2	206338451	206338451	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201266	exon14	c.C2316T	p.F772F	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206717951	206717951	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005006	exon9	c.T782G	p.I261S	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206870307	206870307	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon4	c.A153G	p.V51V	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206878317	206878317	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G820T	p.D274Y	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882405	206882405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G4908A	p.M1636I	.	.	.
DYTN	391475	broad.mit.edu	36	2	207235902	207235902	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093730	exon11	c.A1603G	p.M535V	.	.	.
CPO	130749	broad.mit.edu	36	2	207512629	207512629	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173077	exon1	c.T61C	p.Y21H	.	.	.
CPO	130749	broad.mit.edu	36	2	207533888	207533888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173077	exon6	c.G551A	p.R184Q	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208923773	208923773	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon37	c.G5468A	p.R1823Q	.	.	.
MAP2	4133	broad.mit.edu	36	2	210266729	210266729	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon7	c.G1590T	p.K530N	.	.	.
MAP2	4133	broad.mit.edu	36	2	210303341	210303341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031847	exon13	c.C1484T	p.A495V	.	.	.
UNC80	285175	broad.mit.edu	36	2	210366749	210366749	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182587	exon7	c.T859G	p.S287A	.	.	.
C2orf67	151050	broad.mit.edu	36	2	210604491	210604491	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152519	exon9	c.G2054T	p.R685I	.	.	.
APOB	338	broad.mit.edu	36	2	21081558	21081558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C11687T	p.A3896V	.	.	.
APOB	338	broad.mit.edu	36	2	21083939	21083939	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C9306A	p.F3102L	.	.	.
APOB	338	broad.mit.edu	36	2	21088835	21088835	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.T4410G	p.H1470Q	.	.	.
LANCL1	10314	broad.mit.edu	36	2	211045006	211045006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136574	exon3	c.C121T	p.R41W	.	.	.
CPS1	1373	broad.mit.edu	36	2	211168510	211168510	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001875	exon13	c.G1318T	p.E440X	.	.	.
CPS1	1373	broad.mit.edu	36	2	211215532	211215532	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122634	exon15	c.G1686T	p.V562V	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212004040	212004040	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon21	c.G2518A	p.V840I	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212192197	212192197	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon19	c.A2251C	p.K751Q	.	.	.
SPAG16	79582	broad.mit.edu	36	2	213923605	213923605	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024532	exon7	c.A753C	p.V251V	.	.	.
SPAG16	79582	broad.mit.edu	36	2	214063018	214063018	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024532	exon10	c.G1029A	p.K343K	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215577179	215577179	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon20	c.C2682A	p.L894L	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215592531	215592531	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon12	c.A1522G	p.K508E	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216686093	216686093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021141	exon2	c.G131A	p.R44Q	.	.	.
CTDSP1	58190	broad.mit.edu	36	2	218977277	218977277	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182642	exon7	c.C668T	p.S223L	.	.	.
USP37	57695	broad.mit.edu	36	2	219068727	219068727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020935	exon14	c.C1472T	p.A491V	.	.	.
RQCD1	9125	broad.mit.edu	36	2	219160628	219160628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005444	exon5	c.G506A	p.R169Q	.	.	.
ATG9A	79065	broad.mit.edu	36	2	219799879	219799879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024085	exon4	c.G168T	p.K56N	.	.	.
DES	1674	broad.mit.edu	36	2	219993877	219993877	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001927	exon5	c.G981A	p.Q327Q	.	.	.
SPEG	10290	broad.mit.edu	36	2	220037553	220037553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173476	exon4	c.G313A	p.E105K	.	.	.
FARSB	10056	broad.mit.edu	36	2	223144954	223144954	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005687	exon17	c.G1650T	p.E550D	.	.	.
ACSL3	2181	broad.mit.edu	36	2	223482051	223482051	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004457	exon4	c.G317A	p.G106E	.	.	.
SCG2	7857	broad.mit.edu	36	2	224170598	224170598	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003469	exon2	c.G1647A	p.E549E	.	.	.
SCG2	7857	broad.mit.edu	36	2	224171425	224171425	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003469	exon2	c.A820C	p.K274Q	.	.	.
SERPINE2	5270	broad.mit.edu	36	2	224564931	224564931	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136530	exon4	c.T554G	p.L185R	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225347975	225347975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon52	c.C5904T	p.F1968F	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225367844	225367844	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon45	c.C5150T	p.S1717F	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227667174	227667174	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon20	c.G1280T	p.R427I	.	.	.
COL4A3	1285	broad.mit.edu	36	2	227817914	227817914	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000091	exon5	c.A283G	p.I95V	.	.	.
AGFG1	3267	broad.mit.edu	36	2	228097775	228097775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004504	exon5	c.C594T	p.D198D	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228589845	228589845	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C3969A	p.I1323I	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228590425	228590425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C3389T	p.S1130F	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228592492	228592492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C1322A	p.S441Y	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228598464	228598464	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon5	c.C331A	p.L111I	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230340704	230340704	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon41	c.G5789A	p.R1930Q	.	.	.
SP140	11262	broad.mit.edu	36	2	230884174	230884174	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007237	exon25	c.T2345G	p.I782S	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231970825	231970825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145236	exon2	c.C151T	p.P51S	.	.	.
NMUR1	10316	broad.mit.edu	36	2	232101782	232101782	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006056	exon2	c.C194A	p.A65D	.	.	.
PDE6D	5147	broad.mit.edu	36	2	232311009	232311009	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002601	exon3	c.C223T	p.R75C	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233321965	233321965	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103148	exon4	c.G196T	p.E66X	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233417139	233417139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103148	exon23	c.C3011T	p.A1004V	.	.	.
USP40	55230	broad.mit.edu	36	2	234094431	234094431	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon15	c.T2062C	p.Y688H	.	.	.
USP40	55230	broad.mit.edu	36	2	234124811	234124811	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon5	c.A582C	p.L194L	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234246080	234246080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021027	exon1	c.G761A	p.R254Q	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236937334	236937334	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024726	exon15	c.C1697A	p.P566H	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154612	237154612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020311	exon2	c.C765A	p.F255L	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237940661	237940661	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon8	c.G3087T	p.K1029N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237942521	237942521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon7	c.G2503A	p.D835N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237950296	237950296	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon4	c.G1107T	p.K369N	.	.	.
PRLH	51052	broad.mit.edu	36	2	238140033	238140033	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015893	exon1	c.T78C	p.H26H	.	.	.
RBM44	375316	broad.mit.edu	36	2	238391856	238391856	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080504	exon3	c.G1558T	p.A520S	.	.	.
SCLY	51540	broad.mit.edu	36	2	238641491	238641491	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016510	exon3	c.G249A	p.A83A	.	.	.
AGXT	189	broad.mit.edu	36	2	241466174	241466174	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000030	exon10	c.C1005T	p.I335I	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24323245	24323245	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019595	exon27	c.A3229C	p.K1077Q	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24352109	24352109	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019595	exon17	c.G1977T	p.K659N	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25835972	25835972	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018263	exon8	c.G822A	p.P274P	.	.	.
CAD	790	broad.mit.edu	36	2	27302120	27302120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon12	c.G1664A	p.R555H	.	.	.
TRIM54	57159	broad.mit.edu	36	2	27359202	27359202	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032546	exon1	c.C99A	p.F33L	.	.	.
TRIM54	57159	broad.mit.edu	36	2	27375060	27375060	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032546	exon2	c.G290A	p.R97Q	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27404846	27404846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035521	exon16	c.G2249A	p.R750Q	.	.	.
ZNF513	130557	broad.mit.edu	36	2	27456547	27456547	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144631	exon2	c.A128C	p.D43A	.	.	.
PPM1G	5496	broad.mit.edu	36	2	27461122	27461122	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177983	exon5	c.T747C	p.P249P	.	.	.
KRTCAP3	200634	broad.mit.edu	36	2	27520396	27520396	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168364	exon6	c.A692C	p.E231A	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27656070	27656070	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.C3127A	p.L1043I	.	.	.
ZNF512	84450	broad.mit.edu	36	2	27697532	27697532	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032434	exon14	c.C1404T	p.F468F	.	.	.
SUPT7L	9913	broad.mit.edu	36	2	27729944	27729944	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014860	exon6	c.G1157A	p.S386N	.	.	.
TRMT61B	55006	broad.mit.edu	36	2	28941421	28941421	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017910	exon2	c.C768T	p.G256G	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29149298	29149298	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029883	exon1	c.C1334A	p.S445Y	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29150102	29150102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029883	exon1	c.C530T	p.P177L	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29208544	29208544	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024692	exon4	c.T296C	p.V99A	.	.	.
ALK	238	broad.mit.edu	36	2	29373323	29373323	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon9	c.C1752T	p.V584V	.	.	.
XDH	7498	broad.mit.edu	36	2	31450300	31450300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon16	c.C1629T	p.F543F	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32512314	32512314	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon13	c.A3347C	p.N1116T	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32543285	32543285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon25	c.G5146A	p.V1716I	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32546106	32546106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon27	c.G5366T	p.R1789I	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32557233	32557233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon36	c.G7095A	p.T2365T	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32578383	32578383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon46	c.G8734A	p.E2912K	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32696449	32696449	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon74	c.G14548T	p.E4850X	.	.	.
VIT	5212	broad.mit.edu	36	2	36886242	36886242	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177969	exon13	c.C1275A	p.F425L	.	.	.
ALLC	55821	broad.mit.edu	36	2	3703982	3703982	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018436	exon4	c.G134A	p.W45X	.	.	.
SULT6B1	391365	broad.mit.edu	36	2	37252193	37252193	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032377	exon6	c.C555A	p.F185L	.	.	.
CEBPZ	10153	broad.mit.edu	36	2	37309006	37309006	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005760	exon2	c.C834T	p.S278S	.	.	.
C2orf56	55471	broad.mit.edu	36	2	37323310	37323310	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144736	exon6	c.T651G	p.F217L	.	.	.
CYP1B1	1545	broad.mit.edu	36	2	38151457	38151457	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000104	exon3	c.C1544A	p.S515X	.	.	.
GEMIN6	79833	broad.mit.edu	36	2	38862483	38862483	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024775	exon3	c.T449G	p.I150S	.	.	.
DHX57	90957	broad.mit.edu	36	2	38887247	38887247	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon22	c.C3774T	p.N1258N	.	.	.
CDKL4	344387	broad.mit.edu	36	2	39259851	39259851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009565	exon8	c.G908T	p.R303I	.	.	.
THUMPD2	80745	broad.mit.edu	36	2	39850480	39850480	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025264	exon3	c.A546C	p.E182D	.	.	.
EML4	27436	broad.mit.edu	36	2	42375772	42375772	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145076	exon11	c.A1048C	p.T350P	.	.	.
THADA	63892	broad.mit.edu	36	2	43655006	43655006	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083953	exon11	c.C1702A	p.L568I	.	.	.
LOC728819	728819	broad.mit.edu	36	2	43756023	43756023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101330	exon1	c.G943T	p.D315Y	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43824510	43824510	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172069	exon23	c.G3433T	p.E1145X	.	.	.
C2orf34	79823	broad.mit.edu	36	2	44453393	44453393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024766	exon2	c.G173A	p.R58Q	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46459322	46459322	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001430	exon11	c.A1466G	p.Y489C	.	.	.
KLRAQ1	129285	broad.mit.edu	36	2	48535305	48535305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135629	exon3	c.G194A	p.R65Q	.	.	.
LHCGR	3973	broad.mit.edu	36	2	48768959	48768959	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000233	exon11	c.C1481T	p.S494F	.	.	.
LHCGR	3973	broad.mit.edu	36	2	48804270	48804270	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000233	exon5	c.C453T	p.F151F	.	.	.
FSHR	2492	broad.mit.edu	36	2	49071227	49071227	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181446	exon5	c.C428A	p.S143Y	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50002637	50002637	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138735	exon6	c.G1278A	p.A426A	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50172104	50172104	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138735	exon3	c.T474G	p.V158V	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50701848	50701848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon8	c.C1277T	p.S426L	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55415342	55415342	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135597	exon15	c.C2119T	p.R707X	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60626634	60626634	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138559	exon2	c.T361A	p.C121S	.	.	.
CCT4	10575	broad.mit.edu	36	2	61952890	61952890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006430	exon12	c.G1322A	p.R441Q	.	.	.
B3GNT2	10678	broad.mit.edu	36	2	62303237	62303237	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006577	exon2	c.C378G	p.R126R	.	.	.
B3GNT2	10678	broad.mit.edu	36	2	62303384	62303384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006577	exon2	c.G525A	p.T175T	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63023484	63023484	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142614	exon10	c.G1313T	p.R438I	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63485043	63485043	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015910	exon10	c.C1079T	p.S360L	.	.	.
UGP2	7360	broad.mit.edu	36	2	63936997	63936997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001521	exon2	c.C40T	p.R14W	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64633160	64633160	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017657	exon2	c.G1048T	p.E350X	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64633656	64633656	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017657	exon2	c.G1544T	p.R515I	.	.	.
CEP68	23177	broad.mit.edu	36	2	65152496	65152496	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015147	exon3	c.C762A	p.F254L	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65415259	65415259	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon3	c.C357T	p.I119I	.	.	.
PPP3R1	5534	broad.mit.edu	36	2	68267270	68267270	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000945	exon5	c.A299G	p.D100G	.	.	.
CNRIP1	25927	broad.mit.edu	36	2	68397819	68397819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015463	exon2	c.C304T	p.R102W	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735648	68735648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138964	exon2	c.C618T	p.L206L	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68894037	68894037	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166276	exon5	c.G768A	p.T256T	.	.	.
BMP10	27302	broad.mit.edu	36	2	68946324	68946324	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014482	exon2	c.C1218T	p.V406V	.	.	.
ASPRV1	151516	broad.mit.edu	36	2	70041631	70041631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152792	exon1	c.G694A	p.D232N	.	.	.
TIA1	7072	broad.mit.edu	36	2	70297555	70297555	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022037	exon7	c.C517T	p.R173X	.	.	.
ADD2	119	broad.mit.edu	36	2	70753526	70753526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185054	exon15	c.C1862T	p.S621F	.	.	.
ADD2	119	broad.mit.edu	36	2	70753917	70753917	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017488	exon15	c.C1791A	p.F597L	.	.	.
ATP6V1B1	525	broad.mit.edu	36	2	71043481	71043481	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001692	exon9	c.G852T	p.E284D	.	.	.
NAGK	55577	broad.mit.edu	36	2	71154160	71154160	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017567	exon6	c.C645T	p.D215D	.	.	.
MPHOSPH10	10199	broad.mit.edu	36	2	71214114	71214114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005791	exon2	c.G668A	p.R223Q	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71484555	71484555	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014497	exon17	c.T2877G	p.F959L	.	.	.
DYSF	8291	broad.mit.edu	36	2	71670321	71670321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130982	exon32	c.G3535A	p.D1179N	.	.	.
SMYD5	10322	broad.mit.edu	36	2	73300704	73300704	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006062	exon3	c.A223G	p.R75G	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73489320	73489320	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon2	c.A387C	p.Q129H	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73571549	73571549	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon10	c.T8952C	p.F2984F	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73572089	73572089	+	Silent	SNP	C	T	T	rs45607436	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon10	c.C9492T	p.F3164F	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73681842	73681842	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon19	c.T11882G	p.F3961C	.	.	.
NAT8B	51471	broad.mit.edu	36	2	73781819	73781819	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016347	exon1	c.G122A	p.R41Q	.	.	.
MTHFD2	10797	broad.mit.edu	36	2	74290648	74290648	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006636	exon5	c.T634C	p.L212L	.	.	.
DCTN1	1639	broad.mit.edu	36	2	74443640	74443640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023019	exon24	c.G3116A	p.R1039H	.	.	.
DCTN1	1639	broad.mit.edu	36	2	74447697	74447697	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023019	exon15	c.C1897T	p.L633L	.	.	.
INO80B	83444	broad.mit.edu	36	2	74536871	74536871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031288	exon4	c.G504T	p.K168N	.	.	.
PCGF1	84759	broad.mit.edu	36	2	74587496	74587496	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032673	exon3	c.T223C	p.Y75H	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77599522	77599522	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024993	exon3	c.G981T	p.K327N	.	.	.
REG1A	5967	broad.mit.edu	36	2	79202262	79202262	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002909	exon3	c.G131A	p.R44H	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80500193	80500193	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon9	c.G1249T	p.E417X	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86169467	86169467	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon5	c.C578T	p.A193V	.	.	.
VPS24	51652	broad.mit.edu	36	2	86610001	86610001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016079	exon3	c.G137A	p.R46Q	.	.	.
RNF103	7844	broad.mit.edu	36	2	86685622	86685622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198951	exon5	c.G901A	p.E301K	.	.	.
CD8B	926	broad.mit.edu	36	2	86896274	86896274	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178100	exon4	c.G572T	p.R191I	.	.	.
C2orf51	200523	broad.mit.edu	36	2	88609693	88609693	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152670	exon4	c.G129T	p.K43N	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9446112	9446112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135191	exon22	c.G2369A	p.R790Q	.	.	.
CPSF3	51692	broad.mit.edu	36	2	9487505	9487505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016207	exon3	c.C117T	p.L39L	.	.	.
MAL	4118	broad.mit.edu	36	2	95079073	95079073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002371	exon3	c.C282T	p.T94T	.	.	.
ZNF2	7549	broad.mit.edu	36	2	95207023	95207023	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021088	exon3	c.A102G	p.I34M	.	.	.
ZNF2	7549	broad.mit.edu	36	2	95211556	95211556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017396	exon4	c.G1130A	p.R377H	.	.	.
PROM2	150696	broad.mit.edu	36	2	95309359	95309359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144707	exon11	c.C1314T	p.F438F	.	.	.
ADAM17	6868	broad.mit.edu	36	2	9552285	9552285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003183	exon15	c.G1846A	p.D616N	.	.	.
TRIM43	129868	broad.mit.edu	36	2	95624527	95624527	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138800	exon3	c.G414T	p.E138D	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96316220	96316220	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014014	exon28	c.C3762T	p.F1254F	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96328829	96328829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014014	exon6	c.G694A	p.D232N	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96631205	96631205	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115016	exon20	c.C2518T	p.R840C	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97741918	97741918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015348	exon40	c.C5237T	p.S1746L	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98075993	98075993	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144992	exon2	c.G6T	p.E2D	.	.	.
UNC50	25972	broad.mit.edu	36	2	98592862	98592862	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014044	exon2	c.C208T	p.R70X	.	.	.
LIPT1	51601	broad.mit.edu	36	2	99145044	99145044	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145197	exon4	c.C192A	p.F64L	.	.	.
REV1	51455	broad.mit.edu	36	2	99387387	99387387	+	Silent	SNP	C	T	T	rs2290260	byCluster	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016316	exon18	c.G2997A	p.S999S	.	.	.
REV1	51455	broad.mit.edu	36	2	99418799	99418799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016316	exon7	c.G1250A	p.S417N	.	.	.
MIR216A	406998	broad.mit.edu	36	2	56069590	56069590	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10051460	10051460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033084	exon5	c.C355T	p.R119C	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101131438	101131438	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon3	c.G378A	p.A126A	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101132469	101132469	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon2	c.A86T	p.K29I	.	.	.
GPR128	84873	broad.mit.edu	36	3	101848115	101848115	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032787	exon10	c.G1123T	p.E375X	.	.	.
TFG	10342	broad.mit.edu	36	3	101934145	101934145	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006070	exon5	c.C519A	p.N173K	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101979905	101979905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon26	c.C2113T	p.R705C	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101991050	101991050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon24	c.C1967T	p.A656V	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102053433	102053433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon13	c.C1201T	p.P401S	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102087844	102087844	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon5	c.C496T	p.R166C	.	.	.
SENP7	57337	broad.mit.edu	36	3	102534347	102534347	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020654	exon18	c.A2530C	p.N844H	.	.	.
SENP7	57337	broad.mit.edu	36	3	102573649	102573649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020654	exon7	c.G689A	p.R230Q	.	.	.
RG9MTD1	54931	broad.mit.edu	36	3	102766902	102766902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017819	exon2	c.C587T	p.A196V	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10362721	10362721	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001683	exon14	c.C2370T	p.F790F	.	.	.
CBLB	868	broad.mit.edu	36	3	106921646	106921646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170662	exon10	c.G1342A	p.D448N	.	.	.
MYH15	22989	broad.mit.edu	36	3	109593341	109593341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon38	c.G5446A	p.A1816T	.	.	.
MYH15	22989	broad.mit.edu	36	3	109609898	109609898	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon33	c.G4599T	p.K1533N	.	.	.
MYH15	22989	broad.mit.edu	36	3	109630346	109630346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon28	c.G3445A	p.A1149T	.	.	.
MYH15	22989	broad.mit.edu	36	3	109701799	109701799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon5	c.C412A	p.L138I	.	.	.
MYH15	22989	broad.mit.edu	36	3	109703352	109703352	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon4	c.C296A	p.P99H	.	.	.
MORC1	27136	broad.mit.edu	36	3	110208621	110208621	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014429	exon18	c.T1712G	p.F571C	.	.	.
MORC1	27136	broad.mit.edu	36	3	110271175	110271175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014429	exon9	c.G809A	p.R270K	.	.	.
SLC6A1	6529	broad.mit.edu	36	3	11051225	11051225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003042	exon15	c.C1536A	p.F512L	.	.	.
TMPRSS7	344805	broad.mit.edu	36	3	113251421	113251421	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042575	exon6	c.A622G	p.T208A	.	.	.
TMPRSS7	344805	broad.mit.edu	36	3	113278630	113278630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042575	exon14	c.C1795T	p.R599C	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113409898	113409898	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_183061	exon16	c.T1803C	p.F601F	.	.	.
BOC	91653	broad.mit.edu	36	3	114487025	114487025	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033254	exon19	c.C3080A	p.A1027D	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114669928	114669928	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144718	exon10	c.G903A	p.P301P	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114708086	114708086	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144718	exon2	c.G57A	p.P19P	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114805562	114805562	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017699	exon13	c.T1329G	p.I443M	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114861225	114861225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.C1994T	p.S665F	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114861412	114861412	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.C1807T	p.R603X	.	.	.
NAA50	80218	broad.mit.edu	36	3	114923375	114923375	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025146	exon5	c.C432T	p.P144P	.	.	.
GRAMD1C	54762	broad.mit.edu	36	3	115137909	115137909	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017577	exon14	c.A1563C	p.E521D	.	.	.
ZDHHC23	254887	broad.mit.edu	36	3	115150451	115150451	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173570	exon2	c.G112A	p.V38M	.	.	.
ZDHHC23	254887	broad.mit.edu	36	3	115155754	115155754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173570	exon3	c.G679A	p.A227T	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120817628	120817628	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015900	exon6	c.C744T	p.F248F	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121078012	121078012	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002093	exon8	c.G847T	p.E283X	.	.	.
SYN2	6854	broad.mit.edu	36	3	12157164	12157164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003178	exon3	c.C388T	p.R130W	.	.	.
NDUFB4	4710	broad.mit.edu	36	3	121802666	121802666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004547	exon2	c.C199T	p.R67C	.	.	.
HGD	3081	broad.mit.edu	36	3	121845873	121845873	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000187	exon10	c.C757T	p.L253L	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122243307	122243307	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014980	exon4	c.T358G	p.L120V	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122440623	122440623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014980	exon13	c.G1300A	p.V434I	.	.	.
POLQ	10721	broad.mit.edu	36	3	122689112	122689112	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199420	exon16	c.A5356C	p.S1786R	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122897193	122897193	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.C4852A	p.L1618I	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122898366	122898366	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.G3679T	p.E1227X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122916442	122916442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon10	c.G1345A	p.A449T	.	.	.
CCDC58	131076	broad.mit.edu	36	3	123569787	123569787	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017928	exon3	c.A250C	p.N84H	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123698075	123698075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002264	exon2	c.C28T	p.R10C	.	.	.
DTX3L	151636	broad.mit.edu	36	3	123767443	123767443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138287	exon2	c.G235A	p.E79K	.	.	.
PARP15	165631	broad.mit.edu	36	3	123833728	123833728	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152615	exon6	c.G842A	p.R281Q	.	.	.
ADCY5	111	broad.mit.edu	36	3	124501682	124501682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183357	exon15	c.G2875A	p.D959N	.	.	.
KALRN	8997	broad.mit.edu	36	3	125859316	125859316	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024660	exon41	c.A6009G	p.R2003R	.	.	.
KALRN	8997	broad.mit.edu	36	3	125873423	125873423	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024660	exon48	c.C6927T	p.F2309F	.	.	.
ITGB5	3693	broad.mit.edu	36	3	125965248	125965248	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002213	exon15	c.A2312C	p.N771T	.	.	.
MUC13	56667	broad.mit.edu	36	3	126109870	126109870	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033049	exon11	c.G1350A	p.T450T	.	.	.
SLC12A8	84561	broad.mit.edu	36	3	126322173	126322173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195483	exon6	c.G784A	p.A262T	.	.	.
CAND2	23066	broad.mit.edu	36	3	12829812	12829812	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162499	exon7	c.G931A	p.D311N	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129125351	129125351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207335	exon1	c.G757A	p.A253T	.	.	.
SEC61A1	29927	broad.mit.edu	36	3	129271118	129271118	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013336	exon12	c.A1354G	p.T452A	.	.	.
EEFSEC	60678	broad.mit.edu	36	3	129543086	129543086	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021937	exon5	c.C1107T	p.F369F	.	.	.
RPN1	6184	broad.mit.edu	36	3	129823778	129823778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002950	exon9	c.G1560A	p.E520E	.	.	.
RAB7A	7879	broad.mit.edu	36	3	130008011	130008011	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004637	exon4	c.T287G	p.F96C	.	.	.
RAB43	339122	broad.mit.edu	36	3	130336440	130336440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199469	exon9	c.G532A	p.D178N	.	.	.
MBD4	8930	broad.mit.edu	36	3	130634673	130634673	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003925	exon6	c.G1519A	p.G507S	.	.	.
IFT122	55764	broad.mit.edu	36	3	130660138	130660138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052989	exon4	c.G200A	p.R67H	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130766944	130766944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon25	c.C4450T	p.R1484W	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130772345	130772345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon19	c.G3724A	p.A1242T	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130773295	130773295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon16	c.C3160T	p.R1054W	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131641913	131641913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153264	exon35	c.C6041A	p.S2014Y	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131766538	131766538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon3	c.C672T	p.G224G	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131769739	131769739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon5	c.G2002A	p.D668N	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131883108	131883108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon17	c.G3625A	p.E1209K	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131908491	131908491	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon11	c.T2712G	p.T904T	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131908594	131908594	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon11	c.A2609C	p.N870T	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131931919	131931919	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon5	c.A1508C	p.K503T	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131935492	131935492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon4	c.G1040A	p.R347Q	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131935602	131935602	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon4	c.G930A	p.Q310Q	.	.	.
ACPP	55	broad.mit.edu	36	3	133533736	133533736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099	exon4	c.G314A	p.R105Q	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1346514	1346514	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon11	c.T1259G	p.F420C	.	.	.
STAG1	10274	broad.mit.edu	36	3	137600322	137600322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005862	exon22	c.C2236T	p.L746F	.	.	.
TMEM22	80723	broad.mit.edu	36	3	138056732	138056732	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097599	exon2	c.C740A	p.S247Y	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1390408	1390408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon15	c.G1907A	p.R636Q	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139411368	139411368	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213654	exon3	c.G23A	p.R8H	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139436586	139436586	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213654	exon8	c.T507G	p.I169M	.	.	.
CEP70	80321	broad.mit.edu	36	3	139730954	139730954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024491	exon9	c.G733A	p.D245N	.	.	.
PRR23B	389151	broad.mit.edu	36	3	140221937	140221937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013650	exon1	c.C257T	p.S86L	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1419107	1419107	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon22	c.A2923C	p.R975R	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1420053	1420053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon23	c.C3038A	p.S1013Y	.	.	.
XRN1	54464	broad.mit.edu	36	3	143620365	143620365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019001	exon11	c.G1222A	p.E408K	.	.	.
ATR	545	broad.mit.edu	36	3	143749433	143749433	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon16	c.G3181T	p.E1061X	.	.	.
ATR	545	broad.mit.edu	36	3	143757491	143757491	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon10	c.T2259C	p.C753C	.	.	.
PLS1	5357	broad.mit.edu	36	3	143913074	143913074	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002670	exon15	c.A1671C	p.I557I	.	.	.
TRPC1	7220	broad.mit.edu	36	3	143982508	143982508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003304	exon5	c.G805A	p.E269K	.	.	.
SR140	23350	broad.mit.edu	36	3	144256528	144256528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080415	exon27	c.G2828A	p.R943Q	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144668687	144668687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173653	exon12	c.C1351T	p.R451W	.	.	.
C3orf58	205428	broad.mit.edu	36	3	145187364	145187364	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173552	exon2	c.G947T	p.R316I	.	.	.
C3orf19	51244	broad.mit.edu	36	3	14672123	14672123	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016474	exon3	c.G231T	p.K77N	.	.	.
C3orf19	51244	broad.mit.edu	36	3	14683363	14683363	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016474	exon7	c.G629T	p.R210I	.	.	.
PLOD2	5352	broad.mit.edu	36	3	147292294	147292294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000935	exon8	c.G862A	p.D288N	.	.	.
PLSCR2	57047	broad.mit.edu	36	3	147658918	147658918	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020359	exon4	c.C70A	p.L24I	.	.	.
PLSCR1	5359	broad.mit.edu	36	3	147722107	147722107	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021105	exon7	c.A652G	p.T218A	.	.	.
PLSCR5	389158	broad.mit.edu	36	3	147790135	147790135	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085420	exon6	c.C772A	p.L258I	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148591648	148591648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168378	exon4	c.C914T	p.S305L	.	.	.
CP	1356	broad.mit.edu	36	3	150379065	150379065	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000096	exon16	c.G2705T	p.R902I	.	.	.
CP	1356	broad.mit.edu	36	3	150413146	150413146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000096	exon2	c.G176A	p.G59D	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942849	151942849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005067	exon2	c.C744T	p.I248I	 SIAH2,lung,NS,Substitution - Missense,-1 	.	.
P2RY14	9934	broad.mit.edu	36	3	152413840	152413840	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014879	exon3	c.G955C	p.D319H	.	.	.
P2RY13	53829	broad.mit.edu	36	3	152529027	152529027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176894	exon2	c.C507A	p.F169L	.	.	.
P2RY12	64805	broad.mit.edu	36	3	152539188	152539188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022788	exon3	c.G136A	p.A46T	.	.	.
MED12L	116931	broad.mit.edu	36	3	152565513	152565513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon20	c.C2909T	p.S970L	.	.	.
MED12L	116931	broad.mit.edu	36	3	152577479	152577479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon28	c.C4034T	p.S1345F	.	.	.
CAPN7	23473	broad.mit.edu	36	3	15258700	15258700	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014296	exon16	c.G1800A	p.A600A	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152637453	152637453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178145	exon2	c.G1667A	p.R556Q	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152637855	152637855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178145	exon2	c.C1265A	p.S422Y	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152646923	152646923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon4	c.C3536T	p.S1179L	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156765594	156765594	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon7	c.G837A	p.T279T	.	.	.
ANKRD28	23243	broad.mit.edu	36	3	15701955	15701955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015199	exon21	c.C2081T	p.A694V	.	.	.
SLC33A1	9197	broad.mit.edu	36	3	157028718	157028718	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004733	exon6	c.C1625T	p.S542L	.	.	.
SLC33A1	9197	broad.mit.edu	36	3	157054112	157054112	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004733	exon1	c.A369G	p.L123L	.	.	.
GMPS	8833	broad.mit.edu	36	3	157111315	157111315	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003875	exon6	c.G667T	p.E223X	.	.	.
RARRES1	5918	broad.mit.edu	36	3	159898294	159898294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206963	exon6	c.G752A	p.R251H	.	.	.
SMC4	10051	broad.mit.edu	36	3	161603161	161603161	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002800	exon4	c.T322G	p.F108V	.	.	.
SMC4	10051	broad.mit.edu	36	3	161623964	161623964	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002800	exon14	c.T2077G	p.L693V	.	.	.
KPNA4	3840	broad.mit.edu	36	3	161737306	161737306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002268	exon2	c.G86A	p.R29Q	.	.	.
PPM1L	151742	broad.mit.edu	36	3	162269499	162269499	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139245	exon4	c.C943T	p.R315X	.	.	.
NMD3	51068	broad.mit.edu	36	3	162435215	162435215	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015938	exon6	c.A364C	p.N122H	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16394328	16394328	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015150	exon5	c.G727T	p.E243X	.	.	.
SI	6476	broad.mit.edu	36	3	166199033	166199033	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon38	c.A4529C	p.K1510T	.	.	.
SI	6476	broad.mit.edu	36	3	166259563	166259563	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon12	c.A1280G	p.D427G	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168506401	168506401	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024687	exon17	c.C1449T	p.I483I	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168534443	168534443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024687	exon10	c.G553A	p.V185I	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171033565	171033565	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080460	exon4	c.A1430C	p.N477T	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171040529	171040529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024727	exon9	c.G1594A	p.E532K	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171070222	171070222	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024727	exon1	c.A68C	p.K23T	.	.	.
PRKCI	5584	broad.mit.edu	36	3	171496413	171496413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002740	exon15	c.C1438T	p.R480C	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172214996	172214996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000340	exon3	c.G327T	p.M109I	.	.	.
TNIK	23043	broad.mit.edu	36	3	172284806	172284806	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161565	exon24	c.C2749T	p.L917L	.	.	.
PLD1	5337	broad.mit.edu	36	3	172812907	172812907	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon24	c.A2624G	p.N875S	.	.	.
PLD1	5337	broad.mit.edu	36	3	172892890	172892890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon13	c.G1264A	p.E422K	.	.	.
NCEH1	57552	broad.mit.edu	36	3	173834516	173834516	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146276	exon5	c.C790A	p.L264I	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178252126	178252126	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024665	exon5	c.A287C	p.Q96P	.	.	.
ZMAT3	64393	broad.mit.edu	36	3	180225677	180225677	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152240	exon7	c.G689T	p.R230I	.	.	.
PEX5L	51555	broad.mit.edu	36	3	181098694	181098694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016559	exon3	c.C128T	p.A43V	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181842527	181842527	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon13	c.A1822G	p.T608A	.	.	.
DNAJC19	131118	broad.mit.edu	36	3	182185172	182185172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145261	exon6	c.G301A	p.A101T	.	.	.
SOX2	6657	broad.mit.edu	36	3	182913502	182913502	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003106	exon1	c.G660C	p.S220S	.	.	.
ATP11B	23200	broad.mit.edu	36	3	184059725	184059725	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014616	exon12	c.G1084A	p.E362K	.	.	.
ATP11B	23200	broad.mit.edu	36	3	184074440	184074440	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014616	exon19	c.T2195G	p.L732R	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184406632	184406632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon24	c.G2777A	p.R926Q	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184539308	184539308	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon5	c.C460T	p.R154X	.	.	.
KLHL6	89857	broad.mit.edu	36	3	184694593	184694593	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130446	exon5	c.A1318G	p.T440A	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185153670	185153670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005688	exon18	c.C2565T	p.G855G	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185305900	185305900	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182589	exon5	c.C756T	p.I252I	.	.	.
ECE2	9718	broad.mit.edu	36	3	185491906	185491906	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon18	c.C2460T	p.F820F	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185522001	185522001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182917	exon9	c.G935A	p.R312H	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186629354	186629354	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon2	c.G291A	p.V97V	.	.	.
DGKG	1608	broad.mit.edu	36	3	187388722	187388722	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080744	exon21	c.T1983C	p.G661G	.	.	.
DGKG	1608	broad.mit.edu	36	3	187469342	187469342	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080744	exon12	c.A1058T	p.K353I	.	.	.
HRG	3273	broad.mit.edu	36	3	187878219	187878219	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.T1431G	p.F477L	.	.	.
KNG1	3827	broad.mit.edu	36	3	187942182	187942182	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102416	exon10	c.A1303C	p.K435Q	.	.	.
BCL6	604	broad.mit.edu	36	3	188926039	188926039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130845	exon8	c.G1781A	p.R594Q	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191158395	191158395	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134418	exon15	c.A1584C	p.X528Y	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194475743	194475743	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198505	exon30	c.A3439C	p.R1147R	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194603261	194603261	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032279	exon30	c.G3465T	p.Q1155H	.	.	.
CPN2	1370	broad.mit.edu	36	3	195544815	195544815	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080513	exon2	c.C312A	p.V104V	.	.	.
LRRC15	131578	broad.mit.edu	36	3	195562743	195562743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130830	exon2	c.G325A	p.A109T	.	.	.
GP5	2814	broad.mit.edu	36	3	195599826	195599826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004488	exon2	c.G475A	p.D159N	.	.	.
GP5	2814	broad.mit.edu	36	3	195599953	195599953	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004488	exon2	c.G348A	p.A116A	.	.	.
RNF168	165918	broad.mit.edu	36	3	197683118	197683118	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152617	exon6	c.T1685G	p.V562G	.	.	.
RNF168	165918	broad.mit.edu	36	3	197714233	197714233	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152617	exon1	c.C209A	p.S70Y	.	.	.
SENP5	205564	broad.mit.edu	36	3	198096852	198096852	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152699	exon2	c.A403C	p.N135H	.	.	.
KIAA0226	9711	broad.mit.edu	36	3	198911922	198911922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014687	exon7	c.G1220A	p.R407H	.	.	.
FYTTD1	84248	broad.mit.edu	36	3	198967715	198967715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011537	exon3	c.G47A	p.R16Q	.	.	.
LRCH3	84859	broad.mit.edu	36	3	199043481	199043481	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032773	exon8	c.C998A	p.S333X	.	.	.
EFHB	151651	broad.mit.edu	36	3	19931853	19931853	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon5	c.G1234T	p.E412X	.	.	.
EFHB	151651	broad.mit.edu	36	3	19950026	19950026	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon1	c.C489T	p.F163F	.	.	.
EFHB	151651	broad.mit.edu	36	3	19950207	19950207	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon1	c.C308A	p.S103Y	.	.	.
SGOL1	151648	broad.mit.edu	36	3	20177669	20177669	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199256	exon8	c.C811T	p.R271X	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21527379	21527379	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon4	c.C417A	p.I139I	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21527478	21527478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon4	c.G318T	p.K106N	.	.	.
UBE2E2	7325	broad.mit.edu	36	3	23516169	23516169	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152653	exon4	c.C294A	p.V98V	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23972609	23972609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005126	exon3	c.G361A	p.E121K	.	.	.
RARB	5915	broad.mit.edu	36	3	25517764	25517764	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000965	exon3	c.C394T	p.R132X	.	.	.
NGLY1	55768	broad.mit.edu	36	3	25780749	25780749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145294	exon3	c.C178T	p.R60C	.	.	.
EOMES	8320	broad.mit.edu	36	3	27736754	27736754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005442	exon2	c.C948T	p.F316F	.	.	.
GLB1	2720	broad.mit.edu	36	3	33089140	33089140	+	Missense_Mutation	SNP	G	A	A	rs72555358	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135602	exon2	c.C145T	p.R49C	.	.	.
SUSD5	26032	broad.mit.edu	36	3	33170093	33170093	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015551	exon5	c.T1035C	p.G345G	.	.	.
SUSD5	26032	broad.mit.edu	36	3	33230463	33230463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015551	exon2	c.C251T	p.A84V	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35704376	35704376	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016300	exon6	c.A403C	p.K135Q	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35738220	35738220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016300	exon14	c.G1115A	p.R372H	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36868267	36868267	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014831	exon14	c.A4702C	p.K1568Q	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37354199	37354199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172713	exon19	c.G6411A	p.S2137S	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37793981	37793981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002207	exon24	c.C2636T	p.A879V	.	.	.
CTDSPL	10217	broad.mit.edu	36	3	37963698	37963698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005808	exon2	c.C226T	p.L76F	.	.	.
OXSR1	9943	broad.mit.edu	36	3	38266483	38266483	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005109	exon15	c.G1345T	p.D449Y	.	.	.
SLC22A14	9389	broad.mit.edu	36	3	38322686	38322686	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004803	exon1	c.C165T	p.L55L	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38570799	38570799	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon26	c.C4734T	p.F1578F	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38718476	38718476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon26	c.G4515A	p.T1505T	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38745177	38745177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon15	c.G2500A	p.D834N	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38864087	38864087	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon26	c.C4478T	p.S1493L	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39141830	39141830	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105513	exon10	c.C1072T	p.L358L	.	.	.
CX3CR1	1524	broad.mit.edu	36	3	39282977	39282977	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171174	exon2	c.G124T	p.E42X	.	.	.
RPSA	3921	broad.mit.edu	36	3	39428545	39428545	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002295	exon6	c.A782G	p.Q261R	.	.	.
ENTPD3	956	broad.mit.edu	36	3	40439349	40439349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001248	exon8	c.C836T	p.S279F	.	.	.
ZNF621	285268	broad.mit.edu	36	3	40549459	40549459	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098414	exon5	c.T1194G	p.F398L	.	.	.
CHL1	10752	broad.mit.edu	36	3	406034	406034	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon20	c.A2347C	p.N783H	.	.	.
CHL1	10752	broad.mit.edu	36	3	408473	408473	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon23	c.T2907C	p.Y969Y	.	.	.
ULK4	54986	broad.mit.edu	36	3	41948481	41948481	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon5	c.A400C	p.T134P	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42239465	42239465	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon16	c.T2094C	p.C698C	.	.	.
VIPR1	7433	broad.mit.edu	36	3	42551582	42551582	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004624	exon11	c.C1122T	p.L374L	.	.	.
C3orf23	285343	broad.mit.edu	36	3	44374749	44374749	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029840	exon4	c.T202G	p.F68V	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44464123	44464123	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181489	exon8	c.C2044A	p.L682M	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587123	44587123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018651	exon6	c.G1517A	p.R506Q	.	.	.
ZNF501	115560	broad.mit.edu	36	3	44751007	44751007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145044	exon3	c.C90A	p.F30L	.	.	.
LARS2	23395	broad.mit.edu	36	3	45411146	45411146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015340	exon3	c.G197A	p.R66Q	.	.	.
SLC6A20	54716	broad.mit.edu	36	3	45792327	45792327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022405	exon4	c.C512T	p.A171V	.	.	.
CCR1	1230	broad.mit.edu	36	3	46219763	46219763	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001295	exon2	c.A1046G	p.H349R	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4662079	4662079	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon9	c.C633T	p.S211S	.	.	.
SETD2	29072	broad.mit.edu	36	3	47036271	47036271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014159	exon19	c.G7414A	p.E2472K	.	.	.
SETD2	29072	broad.mit.edu	36	3	47130441	47130441	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014159	exon5	c.G4644A	p.Q1548Q	.	.	.
KIF9	64147	broad.mit.edu	36	3	47253072	47253072	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182902	exon18	c.G1966T	p.E656X	.	.	.
KIF9	64147	broad.mit.edu	36	3	47257437	47257437	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182902	exon17	c.A1782G	p.R594R	.	.	.
KIF9	64147	broad.mit.edu	36	3	47283720	47283720	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182902	exon6	c.A629G	p.N210S	.	.	.
SCAP	22937	broad.mit.edu	36	3	47442026	47442026	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012235	exon8	c.T990G	p.S330S	.	.	.
SMARCC1	6599	broad.mit.edu	36	3	47730920	47730920	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003074	exon8	c.A781C	p.K261Q	.	.	.
FBXW12	285231	broad.mit.edu	36	3	48398204	48398204	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207102	exon9	c.C996T	p.I332I	.	.	.
PFKFB4	5210	broad.mit.edu	36	3	48562598	48562598	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004567	exon2	c.G171T	p.K57N	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48672002	48672002	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001407	exon1	c.C3070T	p.R1024W	.	.	.
DALRD3	55152	broad.mit.edu	36	3	49028084	49028084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018114	exon12	c.C1072T	p.R358C	.	.	.
QARS	5859	broad.mit.edu	36	3	49108503	49108503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005051	exon24	c.G2291A	p.R764Q	.	.	.
USP19	10869	broad.mit.edu	36	3	49129020	49129020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon8	c.C1121T	p.A374V	.	.	.
DAG1	1605	broad.mit.edu	36	3	49523197	49523197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004393	exon2	c.C226T	p.R76C	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51345660	51345660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon35	c.C3506T	p.A1169V	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51388257	51388257	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon51	c.C5410T	p.R1804W	.	.	.
VPRBP	9730	broad.mit.edu	36	3	51426527	51426527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171904	exon18	c.G3686A	p.R1229Q	.	.	.
RAD54L2	23132	broad.mit.edu	36	3	51639967	51639967	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015106	exon6	c.C805T	p.R269W	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52358381	52358381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon14	c.G2431A	p.D811N	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52382070	52382070	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon44	c.T6946C	p.W2316R	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52653767	52653767	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018313	exon9	c.C892T	p.R298X	.	.	.
GNL3	26354	broad.mit.edu	36	3	52695869	52695869	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206825	exon2	c.A22C	p.K8Q	.	.	.
GLT8D1	55830	broad.mit.edu	36	3	52704038	52704038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010983	exon11	c.C979T	p.L327F	.	.	.
TMEM110	375346	broad.mit.edu	36	3	52842425	52842425	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198974	exon10	c.C1074A	p.V358V	.	.	.
PRKCD	5580	broad.mit.edu	36	3	53192242	53192242	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006254	exon8	c.G637A	p.A213T	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53760914	53760914	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon28	c.G3615A	p.S1205S	.	.	.
WNT5A	7474	broad.mit.edu	36	3	55479375	55479375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003392	exon5	c.G928A	p.V310M	.	.	.
ERC2	26059	broad.mit.edu	36	3	55708480	55708480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015576	exon15	c.C2807T	p.S936L	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56633550	56633550	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112736	exon23	c.T4480C	p.S1494P	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56637679	56637679	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112736	exon19	c.T3751C	p.Y1251H	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57115211	57115211	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017563	exon6	c.T562G	p.L188V	.	.	.
PDHB	5162	broad.mit.edu	36	3	58388922	58388922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000925	exon10	c.C959T	p.A320V	.	.	.
FAM107A	11170	broad.mit.edu	36	3	58527396	58527396	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076778	exon4	c.C394T	p.R132W	.	.	.
C3orf67	200844	broad.mit.edu	36	3	58824508	58824508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198463	exon12	c.C1034T	p.S345F	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62191975	62191975	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon14	c.A2325C	p.R775S	.	.	.
CADPS	8618	broad.mit.edu	36	3	62442440	62442440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003716	exon22	c.G3171A	p.A1057A	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63956727	63956727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177387	exon11	c.C2189T	p.S730F	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64059995	64059995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198859	exon8	c.C2307T	p.F769F	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64641942	64641942	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182920	exon3	c.A654G	p.T218T	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65321956	65321956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015520	exon23	c.C3676T	p.R1226C	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67141338	67141338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032505	exon4	c.G1645A	p.V549I	.	.	.
UBA3	9039	broad.mit.edu	36	3	69209682	69209682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198195	exon2	c.G98A	p.R33Q	.	.	.
MITF	4286	broad.mit.edu	36	3	70069783	70069783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198158	exon2	c.C154T	p.P52S	.	.	.
GRM7	2917	broad.mit.edu	36	3	7315431	7315431	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000844	exon3	c.A797C	p.D266A	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77230157	77230157	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002942	exon2	c.C364T	p.R122X	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77695029	77695029	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon10	c.A1482C	p.X494Y	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77706452	77706452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002942	exon14	c.G2084A	p.R695Q	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77728575	77728575	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon18	c.A2779C	p.K927Q	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78759219	78759219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon26	c.C3817T	p.P1273S	.	.	.
CAV3	859	broad.mit.edu	36	3	8762497	8762497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001234	exon2	c.G400A	p.A134T	.	.	.
HTR1F	3355	broad.mit.edu	36	3	88123012	88123012	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000866	exon2	c.C423T	p.G141G	.	.	.
CGGBP1	8545	broad.mit.edu	36	3	88187657	88187657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008390	exon4	c.C160T	p.R54C	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89341794	89341794	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon3	c.G248A	p.R83K	.	.	.
RAD18	56852	broad.mit.edu	36	3	8952606	8952606	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020165	exon7	c.G838T	p.E280X	.	.	.
TADA3	10474	broad.mit.edu	36	3	9808114	9808114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133480	exon2	c.G37A	p.D13N	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98188890	98188890	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080448	exon3	c.A477G	p.E159E	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98676909	98676909	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080448	exon8	c.G1918T	p.G640X	.	.	.
OR5H1	26341	broad.mit.edu	36	3	99334915	99334915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005338	exon1	c.G684T	p.K228N	.	.	.
OR5H15	403274	broad.mit.edu	36	3	99370407	99370407	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005515	exon1	c.A174C	p.P58P	.	.	.
OR5H6	79295	broad.mit.edu	36	3	99466570	99466570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005479	exon1	c.G752A	p.R251Q	.	.	.
OR5K4	403278	broad.mit.edu	36	3	99556011	99556011	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005517	exon1	c.C624A	p.I208I	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99592843	99592843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005516	exon1	c.C644T	p.S215F	.	.	.
ADH6	130	broad.mit.edu	36	4	100348894	100348894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000672	exon6	c.C782T	p.A261V	.	.	.
ADH1C	126	broad.mit.edu	36	4	100487220	100487220	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000669	exon3	c.A225C	p.E75D	.	.	.
MTTP	4547	broad.mit.edu	36	4	100762858	100762858	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000253	exon19	c.C2515T	p.Q839X	.	.	.
PPP3CA	5530	broad.mit.edu	36	4	102336137	102336137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130691	exon2	c.G218A	p.R73Q	.	.	.
BANK1	55024	broad.mit.edu	36	4	103058250	103058250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017935	exon7	c.C1087T	p.L363F	.	.	.
BANK1	55024	broad.mit.edu	36	4	103211478	103211478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017935	exon14	c.C2236T	p.P746S	.	.	.
MANBA	4126	broad.mit.edu	36	4	103830894	103830894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005908	exon6	c.C756T	p.I252I	.	.	.
NHEDC2	133308	broad.mit.edu	36	4	104189606	104189606	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178833	exon6	c.C606T	p.G202G	.	.	.
CENPE	1062	broad.mit.edu	36	4	104291897	104291897	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon26	c.C3324T	p.A1108A	.	.	.
TACR3	6870	broad.mit.edu	36	4	104732217	104732217	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001059	exon4	c.C961A	p.L321I	.	.	.
TET2	54790	broad.mit.edu	36	4	106376939	106376939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017628	exon3	c.C2391T	p.F797F	.	.	.
GSTCD	79807	broad.mit.edu	36	4	106963578	106963578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024751	exon6	c.G998A	p.R333Q	.	.	.
NPNT	255743	broad.mit.edu	36	4	107107864	107107864	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033047	exon11	c.C1416T	p.L472L	.	.	.
PAPSS1	9061	broad.mit.edu	36	4	108794176	108794176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005443	exon9	c.G1157A	p.R386Q	.	.	.
LEF1	51176	broad.mit.edu	36	4	109220154	109220154	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166119	exon6	c.T500C	p.I167T	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109895251	109895251	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146627	exon4	c.G301T	p.D101Y	.	.	.
HS3ST1	9957	broad.mit.edu	36	4	11009996	11009996	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005114	exon2	c.G732A	p.S244S	.	.	.
COL25A1	84570	broad.mit.edu	36	4	110442606	110442606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198721	exon2	c.G19A	p.A7T	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110652685	110652685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006323	exon9	c.G1900A	p.D634N	.	.	.
EGF	1950	broad.mit.edu	36	4	111135415	111135415	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001963	exon20	c.T2935C	p.S979P	.	.	.
TIFA	92610	broad.mit.edu	36	4	113418498	113418498	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052864	exon2	c.C524A	p.S175Y	.	.	.
C4orf21	55345	broad.mit.edu	36	4	113760066	113760066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018392	exon6	c.C581T	p.S194L	.	.	.
UGT8	7368	broad.mit.edu	36	4	115763789	115763789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128174	exon2	c.G304A	p.E102K	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119453858	119453858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003619	exon7	c.G1435A	p.E479K	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119898333	119898333	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon11	c.A1412C	p.K471T	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120170467	120170467	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.C1089T	p.S363S	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120171852	120171852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.C2474T	p.A825V	.	.	.
MYOZ2	51778	broad.mit.edu	36	4	120326759	120326759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016599	exon6	c.G751A	p.E251K	.	.	.
USP53	54532	broad.mit.edu	36	4	120433259	120433259	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019050	exon18	c.T2667C	p.C889C	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120666202	120666202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033437	exon12	c.C1573T	p.R525W	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120747383	120747383	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033437	exon2	c.G514T	p.E172X	.	.	.
MAD2L1	4085	broad.mit.edu	36	4	121200785	121200785	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002358	exon5	c.C554A	p.S185X	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122176988	122176988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024574	exon4	c.G1588A	p.E530K	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122473505	122473505	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198179	exon4	c.G718T	p.E240X	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459973	126459973	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.T2957C	p.V986A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126461577	126461577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G4561A	p.D1521N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590986	126590986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G9365A	p.G3122D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592271	126592271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.C10650T	p.S3550S	.	.	.
FAT4	79633	broad.mit.edu	36	4	126593097	126593097	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon9	c.G11476A	p.V3826I	.	.	.
INTU	27152	broad.mit.edu	36	4	128804062	128804062	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015693	exon4	c.A845G	p.N282S	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128914099	128914099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031291	exon6	c.C868T	p.R290C	.	.	.
PLK4	10733	broad.mit.edu	36	4	129034150	129034150	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190801	exon12	c.A2232C	p.I744I	.	.	.
PHF17	79960	broad.mit.edu	36	4	129983565	129983565	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199320	exon3	c.A60G	p.S20S	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13219330	13219330	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon8	c.G1664T	p.R555I	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291285	134291285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.C540T	p.F180F	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138671586	138671586	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.T1107G	p.I369M	.	.	.
C4orf49	84709	broad.mit.edu	36	4	140407566	140407566	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032623	exon4	c.A360G	p.V120V	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141800209	141800209	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015130	exon11	c.A1904G	p.Y635C	.	.	.
RNF150	57484	broad.mit.edu	36	4	142108278	142108278	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon2	c.C684A	p.V228V	.	.	.
RNF150	57484	broad.mit.edu	36	4	142108339	142108339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon2	c.C623T	p.S208L	.	.	.
RNF150	57484	broad.mit.edu	36	4	142272995	142272995	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon1	c.G418A	p.A140T	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143248747	143248747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003866	exon24	c.G2323A	p.E775K	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143333730	143333730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003866	exon16	c.C1141T	p.L381F	.	.	.
GAB1	2549	broad.mit.edu	36	4	144578691	144578691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207123	exon4	c.G683A	p.S228N	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144684567	144684567	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003601	exon16	c.A2164C	p.K722Q	.	.	.
MMAA	166785	broad.mit.edu	36	4	146795755	146795755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172250	exon7	c.C976T	p.R326C	.	.	.
ARHGAP10	79658	broad.mit.edu	36	4	149015626	149015626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024605	exon8	c.G707A	p.R236Q	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151380372	151380372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040260	exon11	c.C1595A	p.S532Y	.	.	.
PRSS48	345062	broad.mit.edu	36	4	152422788	152422788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183375	exon3	c.C254T	p.S85L	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153466694	153466694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon9	c.G1318T	p.D440Y	 FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.
FBXW7	55294	broad.mit.edu	36	4	153551906	153551906	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033632	exon2	c.A500C	p.K167T	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153552365	153552365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033632	exon2	c.G41A	p.R14Q	.	.	.
TRIM2	23321	broad.mit.edu	36	4	154416504	154416504	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015271	exon3	c.G225T	p.Q75H	.	.	.
TRIM2	23321	broad.mit.edu	36	4	154436311	154436311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015271	exon6	c.G1183A	p.E395K	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154724190	154724190	+	Missense_Mutation	SNP	G	A	A	rs35565709	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon11	c.G976A	p.D326N	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154744409	154744409	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon25	c.A2792C	p.N931T	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155439108	155439108	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon18	c.T4443G	p.L1481L	.	.	.
MAP9	79884	broad.mit.edu	36	4	156500959	156500959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039580	exon7	c.G861A	p.E287E	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156918163	156918163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000857	exon4	c.G216T	p.K72N	.	.	.
ACCN5	51802	broad.mit.edu	36	4	156977341	156977341	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017419	exon8	c.A1185C	p.K395N	.	.	.
GLRB	2743	broad.mit.edu	36	4	158311251	158311251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166060	exon10	c.G1415A	p.R472Q	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158444283	158444283	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083620	exon3	c.G218C	p.G73A	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158501623	158501623	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083619	exon14	c.A2303G	p.N768S	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159268090	159268090	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128424	exon5	c.C1479T	p.I493I	.	.	.
PPID	5481	broad.mit.edu	36	4	159859829	159859829	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005038	exon3	c.G286T	p.E96X	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160482390	160482390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon14	c.G2276A	p.R759K	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164612987	164612987	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032136	exon1	c.C1350T	p.F450F	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164613463	164613463	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032136	exon1	c.T874C	p.S292P	.	.	.
CPE	1363	broad.mit.edu	36	4	166520120	166520120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001873	exon1	c.C297T	p.V99V	.	.	.
TLL1	7092	broad.mit.edu	36	4	167148580	167148580	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012464	exon7	c.G847T	p.E283X	.	.	.
TLL1	7092	broad.mit.edu	36	4	167182647	167182647	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012464	exon11	c.A1280C	p.K427T	.	.	.
DDX60	55601	broad.mit.edu	36	4	169406000	169406000	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017631	exon29	c.A3877C	p.T1293P	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169553832	169553832	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012967	exon27	c.G3510T	p.K1170N	.	.	.
NEK1	4750	broad.mit.edu	36	4	170591329	170591329	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199400	exon26	c.T2611G	p.L871V	.	.	.
NEK1	4750	broad.mit.edu	36	4	170665985	170665985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199400	exon18	c.C1606T	p.R536C	.	.	.
CLRN2	645104	broad.mit.edu	36	4	17137680	17137680	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079827	exon3	c.C576T	p.C192C	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17435770	17435770	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022346	exon10	c.G1465T	p.E489X	.	.	.
GALNT7	51809	broad.mit.edu	36	4	174453184	174453184	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017423	exon4	c.C817T	p.R273X	.	.	.
GALNT7	51809	broad.mit.edu	36	4	174479351	174479351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017423	exon12	c.C1882T	p.R628C	.	.	.
HMGB2	3148	broad.mit.edu	36	4	174490828	174490828	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002129	exon3	c.A263C	p.K88T	.	.	.
LCORL	254251	broad.mit.edu	36	4	17456454	17456454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153686	exon7	c.C945T	p.S315S	.	.	.
MORF4	10934	broad.mit.edu	36	4	174774088	174774088	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006792	exon1	c.C282T	p.F94F	.	.	.
FBXO8	26269	broad.mit.edu	36	4	175420633	175420633	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012180	exon2	c.G186A	p.S62S	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175801641	175801641	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon9	c.C1221T	p.I407I	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176135267	176135267	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130705	exon3	c.G2016T	p.K672N	.	.	.
WDR17	116966	broad.mit.edu	36	4	177326872	177326872	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181265	exon23	c.A3046C	p.K1016Q	.	.	.
NEIL3	55247	broad.mit.edu	36	4	178511757	178511757	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018248	exon8	c.A1341C	p.V447V	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184844871	184844871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199053	exon18	c.G1869T	p.K623N	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185883108	185883108	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024629	exon4	c.G317T	p.R106I	.	.	.
HELT	391723	broad.mit.edu	36	4	186178713	186178713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029887	exon4	c.G777A	p.G259G	.	.	.
SNX25	83891	broad.mit.edu	36	4	186468795	186468795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031953	exon7	c.C683T	p.A228V	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186616979	186616979	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152775	exon6	c.G1756T	p.E586X	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187314227	187314227	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006655	exon6	c.C463T	p.R155C	.	.	.
KLKB1	3818	broad.mit.edu	36	4	187414150	187414150	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000892	exon13	c.A1500G	p.K500K	.	.	.
F11	2160	broad.mit.edu	36	4	187438418	187438418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000128	exon9	c.G913A	p.E305K	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20207146	20207146	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon32	c.T3331G	p.C1111G	.	.	.
GPR125	166647	broad.mit.edu	36	4	21998479	21998479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145290	exon19	c.G3913A	p.D1305N	.	.	.
SLC34A2	10568	broad.mit.edu	36	4	25285100	25285100	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177999	exon11	c.C1298A	p.S433Y	.	.	.
ADD1	118	broad.mit.edu	36	4	2856054	2856054	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001119	exon4	c.A373G	p.T125A	.	.	.
HTT	3064	broad.mit.edu	36	4	3178403	3178403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon44	c.G5970A	p.T1990T	.	.	.
RGS12	6002	broad.mit.edu	36	4	3386292	3386292	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002926	exon6	c.G2206T	p.E736X	.	.	.
LRPAP1	4043	broad.mit.edu	36	4	3486436	3486436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002337	exon7	c.C852T	p.F284F	.	.	.
ZNF141	7700	broad.mit.edu	36	4	357154	357154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003441	exon4	c.C928T	p.P310S	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35845040	35845040	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon10	c.A1882C	p.T628P	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35890486	35890486	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon5	c.G1060A	p.E354K	.	.	.
PGM2	55276	broad.mit.edu	36	4	37539529	37539529	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018290	exon14	c.T1740C	p.D580D	.	.	.
TLR1	7096	broad.mit.edu	36	4	38476069	38476069	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003263	exon4	c.C779A	p.S260Y	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38600876	38600876	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138389	exon9	c.G1036T	p.E346X	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38741028	38741028	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015990	exon1	c.G499T	p.E167X	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38760112	38760112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015990	exon4	c.C976T	p.R326C	.	.	.
RFC1	5981	broad.mit.edu	36	4	38967934	38967934	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon24	c.G3289T	p.E1097X	.	.	.
RFC1	5981	broad.mit.edu	36	4	38987010	38987010	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon13	c.A1526C	p.K509T	.	.	.
LIAS	11019	broad.mit.edu	36	4	39145604	39145604	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194451	exon7	c.C680T	p.A227V	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39540247	39540247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon26	c.C3073T	p.R1025C	.	.	.
N4BP2	55728	broad.mit.edu	36	4	39800165	39800165	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018177	exon9	c.A4039C	p.S1347R	.	.	.
CHRNA9	55584	broad.mit.edu	36	4	40032724	40032724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017581	exon2	c.C188T	p.T63M	.	.	.
PHOX2B	8929	broad.mit.edu	36	4	41444253	41444253	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003924	exon2	c.G299A	p.R100H	.	.	.
TMEM33	55161	broad.mit.edu	36	4	41641679	41641679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018126	exon5	c.C509T	p.A170V	.	.	.
ZNF721	170960	broad.mit.edu	36	4	425911	425911	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.A2345G	p.K782R	.	.	.
D4S234E	27065	broad.mit.edu	36	4	4462303	4462303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040101	exon4	c.G349A	p.V117I	.	.	.
GABRA2	2555	broad.mit.edu	36	4	46006958	46006958	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000807	exon6	c.A548C	p.K183T	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46671127	46671127	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000809	exon6	c.G600T	p.M200I	.	.	.
GABRB1	2560	broad.mit.edu	36	4	46858206	46858206	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000812	exon4	c.C424T	p.R142X	.	.	.
CORIN	10699	broad.mit.edu	36	4	47361845	47361845	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon11	c.A1550C	p.K517T	.	.	.
TXK	7294	broad.mit.edu	36	4	47809273	47809273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003328	exon4	c.G188A	p.R63H	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54839393	54839393	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon15	c.G2110T	p.E704X	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54856136	54856136	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon23	c.C3210T	p.I1070I	.	.	.
KIT	3815	broad.mit.edu	36	4	55286926	55286926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000222	exon9	c.G1493A	p.G498D	.	.	.
KDR	3791	broad.mit.edu	36	4	55668674	55668674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon10	c.G1399A	p.A467T	.	.	.
SRD5A3	79644	broad.mit.edu	36	4	55925068	55925068	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024592	exon3	c.C435T	p.F145F	.	.	.
NMU	10874	broad.mit.edu	36	4	56177293	56177293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006681	exon3	c.C188T	p.S63L	.	.	.
CEP135	9662	broad.mit.edu	36	4	56535719	56535719	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025009	exon11	c.A1300C	p.K434Q	.	.	.
REST	5978	broad.mit.edu	36	4	57492056	57492056	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193508	exon4	c.G2275T	p.E759X	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5800910	5800910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon8	c.C1074T	p.C358C	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6082408	6082408	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099433	exon20	c.G2381T	p.R794I	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6113065	6113065	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144720	exon11	c.T1631C	p.V544A	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62441165	62441165	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon7	c.C1473T	p.I491I	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62457928	62457928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon9	c.G1739T	p.R580I	.	.	.
TECRL	253017	broad.mit.edu	36	4	64829385	64829385	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010874	exon11	c.T933G	p.I311M	.	.	.
CENPC1	1060	broad.mit.edu	36	4	68067748	68067748	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001812	exon6	c.G399A	p.S133S	.	.	.
UBA6	55236	broad.mit.edu	36	4	68178810	68178810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018227	exon26	c.C2297T	p.A766V	.	.	.
UBA6	55236	broad.mit.edu	36	4	68226790	68226790	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018227	exon5	c.C315T	p.F105F	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68881112	68881112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031732	exon6	c.G1022A	p.R341Q	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68885423	68885423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031732	exon4	c.G800A	p.R267Q	.	.	.
UGT2B7	7364	broad.mit.edu	36	4	69996958	69996958	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001074	exon1	c.A131G	p.D44G	.	.	.
UGT2B7	7364	broad.mit.edu	36	4	70008613	70008613	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001074	exon5	c.G1294T	p.V432L	.	.	.
UGT2B28	54490	broad.mit.edu	36	4	70190021	70190021	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053039	exon4	c.C1052A	p.T351N	.	.	.
C4orf7	260436	broad.mit.edu	36	4	71134386	71134386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152997	exon4	c.C151T	p.R51C	.	.	.
AMBN	258	broad.mit.edu	36	4	71499876	71499876	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016519	exon5	c.C218A	p.S73Y	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72582116	72582116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134742	exon16	c.C2009T	p.S670L	.	.	.
GC	2638	broad.mit.edu	36	4	72842651	72842651	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000583	exon7	c.C803T	p.S268F	.	.	.
COX18	285521	broad.mit.edu	36	4	74149944	74149944	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173827	exon3	c.G485A	p.R162Q	.	.	.
ALB	213	broad.mit.edu	36	4	74489744	74489744	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000477	exon2	c.T127G	p.F43V	.	.	.
RASSF6	166824	broad.mit.edu	36	4	74683248	74683248	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177532	exon3	c.G117A	p.Q39Q	.	.	.
PSAPL1	768239	broad.mit.edu	36	4	7486749	7486749	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085382	exon1	c.C758A	p.S253Y	.	.	.
CXCL6	6372	broad.mit.edu	36	4	74921828	74921828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002993	exon3	c.C287T	p.A96V	.	.	.
CDKL2	8999	broad.mit.edu	36	4	76751487	76751487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003948	exon4	c.G446A	p.R149Q	 CDKL2,ovary,NS,Substitution - Missense,0 	.	.
PPEF2	5470	broad.mit.edu	36	4	77006465	77006465	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006239	exon15	c.G1821A	p.W607X	.	.	.
CXCL9	4283	broad.mit.edu	36	4	77143812	77143812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002416	exon4	c.G341A	p.R114Q	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77493416	77493416	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042784	exon15	c.G2329T	p.E777X	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77507507	77507507	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042784	exon11	c.A1794C	p.E598D	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7770722	7770722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020777	exon18	c.C2336T	p.P779L	.	.	.
MRPL1	65008	broad.mit.edu	36	4	79023630	79023630	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020236	exon3	c.G354A	p.K118K	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80012891	80012891	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198892	exon13	c.G1708T	p.E570X	.	.	.
GK2	2712	broad.mit.edu	36	4	80547875	80547875	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033214	exon1	c.T504C	p.V168V	.	.	.
PRDM8	56978	broad.mit.edu	36	4	81340342	81340342	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099403	exon2	c.C84T	p.S28S	.	.	.
BMP3	651	broad.mit.edu	36	4	82186353	82186353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001201	exon2	c.C754T	p.P252S	.	.	.
FAM175A	84142	broad.mit.edu	36	4	84610550	84610550	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139076	exon5	c.C306T	p.F102F	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8467496	8467496	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003501	exon4	c.G438T	p.K146N	.	.	.
AGPAT9	84803	broad.mit.edu	36	4	84728442	84728442	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032717	exon5	c.C610T	p.R204X	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85831911	85831911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon60	c.C9101T	p.A3034V	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85845657	85845657	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon54	c.G8249T	p.R2750I	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85883936	85883936	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon37	c.T6014G	p.F2005C	.	.	.
GPR78	27201	broad.mit.edu	36	4	8639777	8639777	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080819	exon3	c.G879A	p.T293T	.	.	.
CPZ	8532	broad.mit.edu	36	4	8658757	8658757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003652	exon4	c.G818A	p.R273H	.	.	.
DSPP	1834	broad.mit.edu	36	4	88755615	88755615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014208	exon5	c.G2777T	p.S926I	.	.	.
DSPP	1834	broad.mit.edu	36	4	88756355	88756355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014208	exon5	c.G3517A	p.D1173N	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89232521	89232521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon16	c.C1857T	p.I619I	.	.	.
HERC6	55008	broad.mit.edu	36	4	89575914	89575914	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017912	exon18	c.G2264A	p.R755K	.	.	.
HERC6	55008	broad.mit.edu	36	4	89582531	89582531	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017912	exon23	c.C2964A	p.F988L	.	.	.
FAM13A	10144	broad.mit.edu	36	4	89879287	89879287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014883	exon20	c.G2479A	p.E827K	.	.	.
FAM13A	10144	broad.mit.edu	36	4	89921509	89921509	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014883	exon11	c.G1288T	p.E430X	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91035488	91035488	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007351	exon1	c.C343A	p.L115I	.	.	.
DRD5	1816	broad.mit.edu	36	4	9393002	9393002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000798	exon1	c.C251T	p.A84V	.	.	.
GRID2	2895	broad.mit.edu	36	4	94912379	94912379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001510	exon16	c.C2731T	p.P911S	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95348629	95348629	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128429	exon2	c.C61G	p.P21A	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9591419	9591419	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001290	exon6	c.C489T	p.I163I	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96254982	96254982	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001203	exon5	c.G232A	p.D78N	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96271604	96271604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001203	exon10	c.G994A	p.D332N	.	.	.
C4orf37	285555	broad.mit.edu	36	4	99121342	99121342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174952	exon6	c.G763A	p.E255K	.	.	.
RAP1GDS1	5910	broad.mit.edu	36	4	99560249	99560249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100428	exon10	c.C1087A	p.L363I	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100175653	100175653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005668	exon5	c.G877T	p.D293Y	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101620750	101620750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180991	exon8	c.G1437A	p.E479E	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101823316	101823316	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173488	exon5	c.G964A	p.A322T	.	.	.
PAM	5066	broad.mit.edu	36	5	102388875	102388875	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177306	exon23	c.C2627T	p.P876L	.	.	.
NUDT12	83594	broad.mit.edu	36	5	102914564	102914564	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031438	exon7	c.A1286G	p.D429G	.	.	.
ROPN1L	83853	broad.mit.edu	36	5	10514439	10514439	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031916	exon4	c.G561A	p.T187T	.	.	.
FBXL17	64839	broad.mit.edu	36	5	107225454	107225454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163315	exon9	c.G1972A	p.E658K	.	.	.
FER	2241	broad.mit.edu	36	5	108199362	108199362	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005246	exon5	c.G436T	p.E146X	.	.	.
WDR36	134430	broad.mit.edu	36	5	110467505	110467505	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139281	exon7	c.C887A	p.S296X	.	.	.
APC	324	broad.mit.edu	36	5	112201182	112201182	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.T1938G	p.T646T	.	.	.
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112207541	112207541	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.T8297G	p.F2766C	.	.	.
REEP5	7905	broad.mit.edu	36	5	112284783	112284783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005669	exon2	c.G188A	p.G63E	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112797670	112797670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032028	exon1	c.G766A	p.D256N	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112930849	112930849	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon22	c.C3004T	p.R1002X	.	.	.
KCNN2	3781	broad.mit.edu	36	5	113768266	113768266	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021614	exon3	c.T815C	p.V272A	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11399675	11399675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon9	c.G1437T	p.Q479H	.	.	.
TRIM36	55521	broad.mit.edu	36	5	114494368	114494368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018700	exon9	c.G1652A	p.R551H	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114632572	114632572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040440	exon9	c.C1453T	p.P485S	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115346930	115346930	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon2	c.T743C	p.F248S	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115348252	115348252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon3	c.G925A	p.A309T	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115366889	115366889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon12	c.G1950A	p.L650L	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11785266	11785266	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon2	c.C156T	p.L52L	.	.	.
DTWD2	285605	broad.mit.edu	36	5	118204595	118204595	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173666	exon6	c.A813C	p.K271N	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118513080	118513080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005509	exon18	c.C3659T	p.S1220L	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118559969	118559969	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005509	exon31	c.T7462G	p.S2488A	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118996437	118996437	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182761	exon2	c.G166A	p.E56K	.	.	.
PPIC	5480	broad.mit.edu	36	5	122387532	122387532	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000943	exon5	c.G576A	p.S192S	.	.	.
CEP120	153241	broad.mit.edu	36	5	122753683	122753683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166226	exon8	c.G1011T	p.K337N	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124007252	124007252	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020747	exon6	c.C4147A	p.H1383N	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124012054	124012054	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020747	exon4	c.G1922T	p.R641I	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126733522	126733522	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032446	exon6	c.T341C	p.V114A	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127476496	127476496	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001046	exon2	c.T848C	p.V283A	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127544505	127544505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001046	exon23	c.G3132A	p.T1044T	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127548444	127548444	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001046	exon26	c.T3500C	p.V1167A	.	.	.
FBN2	2201	broad.mit.edu	36	5	127642266	127642266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon57	c.G7305T	p.K2435N	.	.	.
FBN2	2201	broad.mit.edu	36	5	127652777	127652777	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon52	c.C6578A	p.S2193Y	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128329991	128329991	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017372	exon1	c.A262C	p.R88R	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128387267	128387267	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017372	exon6	c.G1220T	p.R407I	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128390771	128390771	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017372	exon7	c.C1302A	p.F434L	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	129098577	129098577	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133638	exon22	c.T3348C	p.H1116H	.	.	.
FNIP1	96459	broad.mit.edu	36	5	131042670	131042670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133372	exon12	c.C1300T	p.R434C	.	.	.
IL3	3562	broad.mit.edu	36	5	131426377	131426377	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000588	exon5	c.C453A	p.I151I	.	.	.
IL4	3565	broad.mit.edu	36	5	132046171	132046171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172348	exon3	c.C407T	p.S136L	.	.	.
AFF4	27125	broad.mit.edu	36	5	132259940	132259940	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014423	exon11	c.T2281G	p.S761A	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132452090	132452090	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002154	exon9	c.G1081T	p.E361X	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132460841	132460841	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002154	exon15	c.G1893A	p.K631K	.	.	.
CDKL3	51265	broad.mit.edu	36	5	133672243	133672243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113575	exon8	c.C956T	p.S319F	.	.	.
DDX46	9879	broad.mit.edu	36	5	134159597	134159597	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014829	exon15	c.G1812T	p.K604N	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135304642	135304642	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012159	exon8	c.C688G	p.Q230E	.	.	.
SPOCK1	6695	broad.mit.edu	36	5	136343005	136343005	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004598	exon10	c.C1044T	p.C348C	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137256178	137256178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014386	exon3	c.C244T	p.R82C	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137258161	137258161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014386	exon4	c.A488C	p.E163A	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137745120	137745120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon6	c.C722T	p.S241L	.	.	.
REEP2	51308	broad.mit.edu	36	5	137808120	137808120	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016606	exon4	c.G300T	p.E100D	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13788399	13788399	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon68	c.A11602G	p.I3868V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13807320	13807320	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon62	c.G10547T	p.R3516I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13822655	13822655	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon57	c.A9675C	p.E3225D	.	.	.
SIL1	64374	broad.mit.edu	36	5	138414547	138414547	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037633	exon5	c.G332A	p.R111Q	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13921056	13921056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon25	c.G3880A	p.E1294K	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13973594	13973594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon6	c.G793A	p.E265K	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13981247	13981247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon3	c.G233A	p.R78Q	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139888080	139888080	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017747	exon29	c.C5365A	p.H1789N	.	.	.
APBB3	10307	broad.mit.edu	36	5	139921957	139921957	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133174	exon6	c.A538C	p.S180R	.	.	.
WDR55	54853	broad.mit.edu	36	5	140028542	140028542	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017706	exon4	c.A542C	p.K181T	.	.	.
HARS2	23438	broad.mit.edu	36	5	140056811	140056811	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012208	exon9	c.A926G	p.Y309C	.	.	.
ZMAT2	153527	broad.mit.edu	36	5	140065396	140065396	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144723	exon6	c.A471C	p.K157N	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140146651	140146651	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031410	exon1	c.A592C	p.K198Q	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140155034	140155034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G301A	p.E101K	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140169024	140169024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031500	exon1	c.G2068A	p.D690N	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140182202	140182202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018908	exon1	c.G658A	p.E220K	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210011	140210011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.C1747T	p.R583W	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140216373	140216373	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031860	exon1	c.G556T	p.D186Y	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287863	140287863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031882	exon1	c.G1202A	p.G401E	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412642	140412642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.C1403T	p.A468V	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461611	140461611	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018937	exon1	c.G1194T	p.E398D	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140482680	140482680	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018938	exon1	c.T916A	p.L306M	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483885	140483885	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018938	exon1	c.C2121T	p.F707F	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140495351	140495351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.G151T	p.D51Y	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511393	140511393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.C1371T	p.F457F	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538949	140538949	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019120	exon1	c.T1150C	p.C384R	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140539383	140539383	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019120	exon1	c.C1584T	p.F528F	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548657	140548657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019119	exon1	c.G1581A	p.S527S	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553821	140553821	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.C1512A	p.V504V	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553943	140553943	+	Missense_Mutation	SNP	C	T	T	rs17844584	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.C1634T	p.A545V	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140691362	140691362	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.C927T	p.F309F	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699192	140699192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.C470T	p.A157V	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140710622	140710622	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018922	exon1	c.C611A	p.S204Y	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711584	140711584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018922	exon1	c.G1573A	p.E525K	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140720451	140720451	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018923	exon1	c.C565T	p.R189C	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140725117	140725117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032054	exon1	c.G1036A	p.E346K	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140743714	140743714	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032087	exon1	c.C1064A	p.S355X	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140775351	140775351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032090	exon1	c.C2425T	p.P809S	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845375	140845375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032406	exon1	c.C451T	p.R151C	.	.	.
KIAA0141	9812	broad.mit.edu	36	5	141294000	141294000	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142603	exon9	c.T909G	p.Y303X	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141316758	141316758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016580	exon1	c.C843T	p.F281F	.	.	.
YIPF5	81555	broad.mit.edu	36	5	143525338	143525338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030799	exon3	c.C134T	p.S45L	.	.	.
RBM27	54439	broad.mit.edu	36	5	145583269	145583269	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018989	exon3	c.G289T	p.E97X	.	.	.
STK32A	202374	broad.mit.edu	36	5	146734877	146734877	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112724	exon11	c.A935C	p.E312A	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146996770	146996770	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon11	c.A1565C	p.Y522S	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146999412	146999412	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon10	c.C1506A	p.I502I	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147031533	147031533	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon2	c.G30T	p.E10D	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147485337	147485337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127698	exon29	c.C2797T	p.R933C	.	.	.
ANKH	56172	broad.mit.edu	36	5	14769866	14769866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054027	exon9	c.G1090A	p.A364T	.	.	.
ANKH	56172	broad.mit.edu	36	5	14804255	14804255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054027	exon5	c.C610T	p.R204C	.	.	.
ABLIM3	22885	broad.mit.edu	36	5	148609571	148609571	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014945	exon19	c.C1700T	p.S567F	.	.	.
FAT2	2196	broad.mit.edu	36	5	150891665	150891665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon13	c.G9487A	p.D3163N	.	.	.
FAT2	2196	broad.mit.edu	36	5	150902648	150902648	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.G8233T	p.D2745Y	.	.	.
FAT2	2196	broad.mit.edu	36	5	150902957	150902957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.G7924A	p.V2642M	.	.	.
FAT2	2196	broad.mit.edu	36	5	150927106	150927106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon1	c.G1580T	p.R527I	.	.	.
SPARC	6678	broad.mit.edu	36	5	151032960	151032960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003118	exon4	c.G131A	p.G44E	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151752108	151752108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020167	exon4	c.G1085A	p.R362Q	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153010244	153010244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon4	c.C622T	p.R208C	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153058666	153058666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon10	c.G1292A	p.G431D	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153129990	153129990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon13	c.C2092T	p.R698W	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153130083	153130083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon13	c.C2185T	p.R729W	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153746174	153746174	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198321	exon7	c.C1047T	p.I349I	.	.	.
CNOT8	9337	broad.mit.edu	36	5	154224972	154224972	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004779	exon3	c.C145T	p.R49X	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154375454	154375454	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.G1842T	p.K614N	.	.	.
ITK	3702	broad.mit.edu	36	5	156582541	156582541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005546	exon6	c.G586A	p.E196K	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156685186	156685186	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037333	exon17	c.G1944A	p.T648T	.	.	.
ADAM19	8728	broad.mit.edu	36	5	156865318	156865318	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033274	exon11	c.A1067C	p.D356A	.	.	.
UBLCP1	134510	broad.mit.edu	36	5	158630191	158630191	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145049	exon5	c.A410C	p.K137T	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161463608	161463608	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon6	c.C767T	p.S256F	.	.	.
MAT2B	27430	broad.mit.edu	36	5	162877877	162877877	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013283	exon7	c.G935A	p.R312Q	.	.	.
FAM134B	54463	broad.mit.edu	36	5	16536478	16536478	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034850	exon4	c.T562G	p.F188V	.	.	.
MYO10	4651	broad.mit.edu	36	5	16734987	16734987	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012334	exon31	c.C4182T	p.I1394I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167421803	167421803	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon7	c.C1470A	p.L490L	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168055924	168055924	+	Silent	SNP	G	A	A	rs61746224	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003062	exon28	c.C3033T	p.C1011C	.	.	.
MYO10	4651	broad.mit.edu	36	5	16811256	16811256	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012334	exon18	c.C1819T	p.R607W	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168155131	168155131	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003062	exon10	c.C966T	p.I322I	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169048866	169048866	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon9	c.G794A	p.G265D	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169057961	169057961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon11	c.G985A	p.D329N	.	.	.
LCP2	3937	broad.mit.edu	36	5	169612710	169612710	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005565	exon18	c.G1236A	p.A412A	.	.	.
KCNMB1	3779	broad.mit.edu	36	5	169744981	169744981	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004137	exon2	c.C49A	p.L17I	.	.	.
GABRP	2568	broad.mit.edu	36	5	170157070	170157070	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014211	exon6	c.A481G	p.N161D	.	.	.
BNIP1	662	broad.mit.edu	36	5	172523466	172523466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013980	exon6	c.C650T	p.A217V	.	.	.
NSD1	64324	broad.mit.edu	36	5	176570723	176570723	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon5	c.A2717C	p.K906T	.	.	.
NSD1	64324	broad.mit.edu	36	5	176642135	176642135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon19	c.C5956T	p.R1986C	.	.	.
GRK6	2870	broad.mit.edu	36	5	176794510	176794510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004105	exon10	c.G931A	p.D311N	.	.	.
GRM6	2916	broad.mit.edu	36	5	178346534	178346534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon7	c.G1411A	p.D471N	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178632632	178632632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021599	exon3	c.G574A	p.E192K	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179602298	179602298	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139070	exon8	c.A752C	p.K251T	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179640162	179640162	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139070	exon2	c.C6T	p.S2S	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179698153	179698153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005110	exon2	c.G61A	p.E21K	.	.	.
CDH18	1016	broad.mit.edu	36	5	19757225	19757225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004934	exon5	c.G631A	p.D211N	.	.	.
CDH12	1010	broad.mit.edu	36	5	22114503	22114503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004061	exon5	c.C40A	p.L14M	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23545410	23545410	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon3	c.A144C	p.K48N	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23557034	23557034	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon6	c.G497T	p.R166I	.	.	.
CDH9	1007	broad.mit.edu	36	5	26921674	26921674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon11	c.C1688T	p.T563I	.	.	.
CDH9	1007	broad.mit.edu	36	5	26938458	26938458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon7	c.G1137T	p.E379D	.	.	.
CDH6	1004	broad.mit.edu	36	5	31353599	31353599	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004932	exon11	c.C1693A	p.L565I	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32275022	32275022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040446	exon13	c.G1186A	p.D396N	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33651795	33651795	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030955	exon15	c.G2283A	p.W761X	.	.	.
RAI14	26064	broad.mit.edu	36	5	34854682	34854682	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145522	exon12	c.A876C	p.E292D	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35034594	35034594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon14	c.G1532T	p.R511I	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35842677	35842677	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024867	exon35	c.G5122T	p.E1708X	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	35993069	35993069	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152404	exon5	c.G1053A	p.W351X	.	.	.
RANBP3L	202151	broad.mit.edu	36	5	36293353	36293353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145000	exon9	c.C732A	p.F244L	.	.	.
RANBP3L	202151	broad.mit.edu	36	5	36296697	36296697	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145000	exon8	c.C611A	p.S204Y	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37060549	37060549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon30	c.C5680T	p.R1894C	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37200145	37200145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon37	c.C7575T	p.F2525F	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37211773	37211773	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon31	c.T5973G	p.I1991M	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37220855	37220855	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon25	c.A4273C	p.N1425H	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37237577	37237577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon19	c.C3380T	p.S1127L	.	.	.
LIFR	3977	broad.mit.edu	36	5	38566454	38566454	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon2	c.A53C	p.K18T	.	.	.
RICTOR	253260	broad.mit.edu	36	5	38998386	38998386	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon18	c.G1626T	p.E542D	.	.	.
FYB	2533	broad.mit.edu	36	5	39189434	39189434	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199335	exon3	c.A1165C	p.T389P	.	.	.
C9	735	broad.mit.edu	36	5	39351804	39351804	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001737	exon6	c.A700C	p.N234H	.	.	.
CARD6	84674	broad.mit.edu	36	5	40889247	40889247	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032587	exon3	c.A2056C	p.R686R	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41035617	41035617	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon40	c.C4504A	p.L1502M	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41053754	41053754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon28	c.C2839T	p.R947C	.	.	.
C6	729	broad.mit.edu	36	5	41185260	41185260	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000065	exon17	c.G2463T	p.E821D	.	.	.
FBXO4	26272	broad.mit.edu	36	5	41962896	41962896	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012176	exon2	c.T214C	p.S72P	.	.	.
GHR	2690	broad.mit.edu	36	5	42755154	42755154	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000163	exon10	c.C1788T	p.T596T	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43316392	43316392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153361	exon4	c.G1115A	p.R372Q	 MGC42105,large_intestine,NS,Substitution - Nonsense,+1 	.	.
HCN1	348980	broad.mit.edu	36	5	45298579	45298579	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon8	c.T1874G	p.I625S	.	.	.
HCN1	348980	broad.mit.edu	36	5	45302953	45302953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon7	c.G1778A	p.R593Q	.	.	.
HCN1	348980	broad.mit.edu	36	5	45339653	45339653	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon6	c.T1423G	p.L475V	.	.	.
ITGA1	3672	broad.mit.edu	36	5	52254418	52254418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181501	exon18	c.G2347A	p.D783N	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5292964	5292964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139056	exon16	c.G2449A	p.D817N	.	.	.
GZMK	3003	broad.mit.edu	36	5	54363067	54363067	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002104	exon4	c.C482A	p.S161X	.	.	.
CDC20B	166979	broad.mit.edu	36	5	54471914	54471914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170402	exon5	c.G565A	p.E189K	.	.	.
SKIV2L2	23517	broad.mit.edu	36	5	54639715	54639715	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015360	exon1	c.G117C	p.G39G	.	.	.
SLC38A9	153129	broad.mit.edu	36	5	54980802	54980802	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173514	exon11	c.T1050G	p.F350L	.	.	.
DDX4	54514	broad.mit.edu	36	5	55146928	55146928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166533	exon20	c.G1957A	p.E653K	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5516259	5516259	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015325	exon13	c.A3812C	p.Q1271P	.	.	.
MIER3	166968	broad.mit.edu	36	5	56254923	56254923	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152622	exon13	c.G1439T	p.R480I	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56814176	56814176	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017992	exon1	c.C116A	p.P39H	.	.	.
PLK2	10769	broad.mit.edu	36	5	57788159	57788159	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006622	exon9	c.G1171T	p.E391X	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292560	63292560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.C743T	p.P248L	.	.	.
RNF180	285671	broad.mit.edu	36	5	63545217	63545217	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178532	exon4	c.C308A	p.P103Q	.	.	.
RNF180	285671	broad.mit.edu	36	5	63545352	63545352	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178532	exon4	c.A443G	p.D148G	.	.	.
TRIM23	373	broad.mit.edu	36	5	64928756	64928756	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033228	exon8	c.G1187A	p.R396Q	.	.	.
TRIM23	373	broad.mit.edu	36	5	64941004	64941004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033228	exon6	c.G866A	p.R289Q	.	.	.
TRIM23	373	broad.mit.edu	36	5	64945773	64945773	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033228	exon3	c.A274C	p.N92H	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65385431	65385431	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018695	exon21	c.T2529C	p.C843C	.	.	.
CD180	4064	broad.mit.edu	36	5	66515356	66515356	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005582	exon3	c.G1071T	p.K357N	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67558413	67558413	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181523	exon1	c.G154T	p.E52X	.	.	.
BDP1	55814	broad.mit.edu	36	5	70841715	70841715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018429	exon17	c.G3040A	p.A1014T	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71531076	71531076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G6138T	p.E2046D	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72197248	72197248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon6	c.C508T	p.R170C	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72228660	72228660	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon20	c.T2240G	p.I747S	.	.	.
TMEM174	134288	broad.mit.edu	36	5	72505202	72505202	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153217	exon1	c.A376C	p.N126H	.	.	.
ANKRA2	57763	broad.mit.edu	36	5	72894260	72894260	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023039	exon2	c.T203G	p.F68C	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73189720	73189720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177693	exon16	c.C1967T	p.A656V	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74360520	74360520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016591	exon1	c.C1099T	p.R367C	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74360824	74360824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016591	exon1	c.C795A	p.F265L	.	.	.
POC5	134359	broad.mit.edu	36	5	75044444	75044444	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099271	exon2	c.G75A	p.S25S	.	.	.
SV2C	22987	broad.mit.edu	36	5	75623350	75623350	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014979	exon8	c.T1250G	p.I417S	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	75929078	75929078	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006633	exon10	c.G966A	p.T322T	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76660632	76660632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003719	exon4	c.C644T	p.S215L	.	.	.
SCAMP1	9522	broad.mit.edu	36	5	77790835	77790835	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004866	exon8	c.C745A	p.H249N	.	.	.
ARSB	411	broad.mit.edu	36	5	78287072	78287072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000046	exon4	c.C700A	p.L234I	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78414508	78414508	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178005	exon4	c.G379T	p.E127X	.	.	.
BHMT	635	broad.mit.edu	36	5	78462633	78462633	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001713	exon8	c.G1159T	p.E387X	.	.	.
HOMER1	9456	broad.mit.edu	36	5	78782572	78782572	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004272	exon3	c.G291A	p.S97S	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79062783	79062783	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.G2439T	p.K813N	 CMYA5,lung,NS,Substitution - Missense,+1 	.	.
CMYA5	202333	broad.mit.edu	36	5	79064463	79064463	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.C4119T	p.I1373I	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066534	79066534	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.A6190G	p.T2064A	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79069562	79069562	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.C9218A	p.P3073Q	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7914699	7914699	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024091	exon5	c.A1766C	p.K589T	.	.	.
MTX3	345778	broad.mit.edu	36	5	79321813	79321813	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010891	exon3	c.G154A	p.D52N	.	.	.
THBS4	7060	broad.mit.edu	36	5	79402653	79402653	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003248	exon13	c.C1614A	p.I538I	.	.	.
THBS4	7060	broad.mit.edu	36	5	79414711	79414711	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003248	exon22	c.C2877T	p.F959F	.	.	.
SPZ1	84654	broad.mit.edu	36	5	79652397	79652397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032567	exon1	c.G607A	p.A203T	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79769474	79769474	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105251	exon4	c.A1214C	p.D405A	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79769953	79769953	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105251	exon4	c.G1693T	p.D565Y	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79776852	79776852	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105251	exon7	c.G2596T	p.E866X	.	.	.
VCAN	1462	broad.mit.edu	36	5	82821811	82821811	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon3	c.A209G	p.E70G	.	.	.
VCAN	1462	broad.mit.edu	36	5	82853255	82853255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164098	exon7	c.G3374A	p.R1125H	.	.	.
VCAN	1462	broad.mit.edu	36	5	82871105	82871105	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.C3566A	p.S1189Y	.	.	.
EDIL3	10085	broad.mit.edu	36	5	83396309	83396309	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005711	exon8	c.T918G	p.T306T	.	.	.
RASA1	5921	broad.mit.edu	36	5	86716939	86716939	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002890	exon22	c.A2824C	p.N942H	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88083600	88083600	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon5	c.A419G	p.N140S	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88092568	88092568	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193347	exon6	c.A449C	p.K150T	.	.	.
GPR98	84059	broad.mit.edu	36	5	90021533	90021533	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon30	c.T6590G	p.L2197R	.	.	.
GPR98	84059	broad.mit.edu	36	5	90025621	90025621	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon33	c.C7292T	p.A2431V	.	.	.
GPR98	84059	broad.mit.edu	36	5	90060380	90060380	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon49	c.T10300G	p.L3434V	.	.	.
GPR98	84059	broad.mit.edu	36	5	90142158	90142158	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon74	c.T15325C	p.W5109R	.	.	.
GPR98	84059	broad.mit.edu	36	5	90172232	90172232	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon78	c.A16693G	p.T5565A	.	.	.
ARRDC3	57561	broad.mit.edu	36	5	90714529	90714529	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020801	exon1	c.C137A	p.S46Y	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9119581	9119581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003966	exon17	c.G2251A	p.E751K	.	.	.
BRD9	65980	broad.mit.edu	36	5	931568	931568	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023924	exon11	c.G1173A	p.S391S	.	.	.
C5orf36	285600	broad.mit.edu	36	5	93881934	93881934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145678	exon5	c.C745A	p.L249I	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94781768	94781768	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152548	exon5	c.C562T	p.R188X	.	.	.
TTC37	9652	broad.mit.edu	36	5	94839762	94839762	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon40	c.A4353C	p.L1451F	.	.	.
RHOBTB3	22836	broad.mit.edu	36	5	95098380	95098380	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014899	exon3	c.G260A	p.R87Q	.	.	.
ERAP2	64167	broad.mit.edu	36	5	96274880	96274880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022350	exon17	c.G2620A	p.D874N	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96376496	96376496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005575	exon13	c.G2317A	p.D773N	.	.	.
TAS2R1	50834	broad.mit.edu	36	5	9682596	9682596	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019599	exon1	c.C549A	p.F183L	.	.	.
PRDM13	59336	broad.mit.edu	36	6	100163354	100163354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021620	exon2	c.G161A	p.G54E	.	.	.
SIM1	6492	broad.mit.edu	36	6	100975417	100975417	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon9	c.G1137T	p.K379N	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101182551	101182551	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon28	c.T4409C	p.V1470A	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101201255	101201255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon22	c.G3590A	p.R1197Q	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101207434	101207434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon18	c.G2876A	p.R959Q	.	.	.
GRIK2	2898	broad.mit.edu	36	6	101953917	101953917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021956	exon1	c.C43T	p.R15C	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102354310	102354310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021956	exon7	c.G1046A	p.R349Q	.	.	.
BVES	11149	broad.mit.edu	36	6	105671344	105671344	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007073	exon6	c.A741C	p.E247D	.	.	.
POPDC3	64208	broad.mit.edu	36	6	105713150	105713150	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022361	exon4	c.G764A	p.R255K	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10637587	10637587	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145649	exon3	c.G457A	p.A153T	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10664730	10664730	+	Missense_Mutation	SNP	G	A	A	rs55834933	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001491	exon1	c.G88A	p.D30N	.	.	.
AIM1	202	broad.mit.edu	36	6	107079730	107079730	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001624	exon3	c.C3051A	p.L1017L	.	.	.
QRSL1	55278	broad.mit.edu	36	6	107206896	107206896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018292	exon6	c.C677T	p.S226L	.	.	.
NR2E1	7101	broad.mit.edu	36	6	108608785	108608785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003269	exon7	c.G821A	p.R274Q	.	.	.
LACE1	246269	broad.mit.edu	36	6	108947615	108947615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145315	exon12	c.C1226T	p.S409L	.	.	.
LACE1	246269	broad.mit.edu	36	6	108950208	108950208	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145315	exon13	c.C1333T	p.L445F	.	.	.
GCM2	9247	broad.mit.edu	36	6	10982978	10982978	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004752	exon5	c.G757T	p.D253Y	.	.	.
GCM2	9247	broad.mit.edu	36	6	10985540	10985540	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004752	exon2	c.G162A	p.E54E	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11002401	11002401	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040274	exon4	c.T314G	p.I105S	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11038615	11038615	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040274	exon19	c.C1515A	p.F505L	.	.	.
CDC40	51362	broad.mit.edu	36	6	110656815	110656815	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015891	exon14	c.T1505G	p.F502C	.	.	.
C6orf186	728464	broad.mit.edu	36	6	110673921	110673921	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123364	exon5	c.C1022A	p.P341H	.	.	.
SLC22A16	85413	broad.mit.edu	36	6	110870164	110870164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033125	exon4	c.G1159A	p.E387K	.	.	.
ELOVL2	54898	broad.mit.edu	36	6	11113670	11113670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017770	exon3	c.G176T	p.R59I	.	.	.
ERVFRDE1	405754	broad.mit.edu	36	6	11212855	11212855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207582	exon2	c.G675A	p.A225A	.	.	.
FYN	2534	broad.mit.edu	36	6	112131961	112131961	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002037	exon7	c.C481T	p.R161X	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112550057	112550057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105207	exon32	c.C4307T	p.A1436V	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112619634	112619634	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105207	exon6	c.C615A	p.V205V	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485141	114485141	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153612	exon2	c.C1014A	p.I338I	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485646	114485646	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153612	exon2	c.A509G	p.Y170C	.	.	.
FRK	2444	broad.mit.edu	36	6	116384459	116384459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002031	exon5	c.G807T	p.M269I	.	.	.
FRK	2444	broad.mit.edu	36	6	116396526	116396526	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002031	exon3	c.G536A	p.R179Q	.	.	.
TSPYL4	23270	broad.mit.edu	36	6	116681414	116681414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021648	exon1	c.G451A	p.E151K	.	.	.
TMEM170B	100113407	broad.mit.edu	36	6	11683670	11683670	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100829	exon3	c.T289C	p.Y97H	.	.	.
DSE	29940	broad.mit.edu	36	6	116863451	116863451	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080976	exon6	c.G1127A	p.G376D	.	.	.
FAM26F	441168	broad.mit.edu	36	6	116891355	116891355	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010919	exon3	c.G742T	p.E248X	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117055570	117055570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161664	exon3	c.G1007A	p.R336H	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117058386	117058386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010892	exon5	c.G1894A	p.A632T	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117220770	117220770	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148963	exon6	c.T2009G	p.F670C	.	.	.
ROS1	6098	broad.mit.edu	36	6	117822043	117822043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon10	c.G1139T	p.R380I	.	.	.
ROS1	6098	broad.mit.edu	36	6	117822559	117822559	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon9	c.A892T	p.K298X	.	.	.
DCBLD1	285761	broad.mit.edu	36	6	117967118	117967118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173674	exon9	c.G984A	p.R328R	.	.	.
NUS1	116150	broad.mit.edu	36	6	118120910	118120910	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138459	exon2	c.G428T	p.R143I	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118703402	118703402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029858	exon5	c.G725A	p.R242Q	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118909663	118909663	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178035	exon9	c.G1726T	p.E576X	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119343109	119343109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon10	c.G2194A	p.E732K	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119382845	119382845	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon4	c.G1329A	p.E443E	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121523869	121523869	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon23	c.G2603T	p.R868I	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121604384	121604384	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon19	c.A2171C	p.K724T	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12232135	12232135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002114	exon4	c.C4121T	p.T1374M	.	.	.
TRDN	10345	broad.mit.edu	36	6	123632705	123632705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006073	exon31	c.C1726T	p.P576S	.	.	.
EDN1	1906	broad.mit.edu	36	6	12400716	12400716	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168319	exon2	c.T218G	p.V73G	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129691137	129691137	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon29	c.C4198T	p.R1400X	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129732798	129732798	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon34	c.C4929T	p.L1643L	.	.	.
L3MBTL3	84456	broad.mit.edu	36	6	130414220	130414220	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032438	exon6	c.G423A	p.Q141Q	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132210623	132210623	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006208	exon2	c.T255C	p.C85C	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132232251	132232251	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006208	exon13	c.A1334C	p.K445T	.	.	.
STX7	8417	broad.mit.edu	36	6	132835170	132835170	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003569	exon4	c.G193T	p.E65X	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132901484	132901484	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175057	exon1	c.T363C	p.F121F	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933579	132933579	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175067	exon1	c.C426A	p.T142T	.	.	.
TAAR1	134864	broad.mit.edu	36	6	133008529	133008529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138327	exon1	c.G307A	p.D103N	.	.	.
EYA4	2070	broad.mit.edu	36	6	133878211	133878211	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172103	exon16	c.C1492A	p.L498M	.	.	.
FOXF2	2295	broad.mit.edu	36	6	1339980	1339980	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001452	exon2	c.G1222T	p.D408Y	.	.	.
SLC2A12	154091	broad.mit.edu	36	6	134354126	134354126	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145176	exon5	c.A1714C	p.N572H	.	.	.
SGK1	6446	broad.mit.edu	36	6	134533854	134533854	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143676	exon12	c.C1323T	p.F441F	.	.	.
MYB	4602	broad.mit.edu	36	6	135560094	135560094	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161656	exon10	c.C1497T	p.D499D	.	.	.
PDE7B	27115	broad.mit.edu	36	6	136471628	136471628	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018945	exon3	c.A149G	p.D50G	.	.	.
MAP7	9053	broad.mit.edu	36	6	136752312	136752312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198614	exon5	c.G347A	p.R116Q	.	.	.
MAP3K5	4217	broad.mit.edu	36	6	137060091	137060091	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005923	exon5	c.G934T	p.D312Y	.	.	.
SLC35D3	340146	broad.mit.edu	36	6	137287110	137287110	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008783	exon2	c.G834A	p.E278E	.	.	.
RANBP9	10048	broad.mit.edu	36	6	13730636	13730636	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005493	exon14	c.A2127G	p.G709G	.	.	.
CD83	9308	broad.mit.edu	36	6	14239822	14239822	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004233	exon3	c.C246T	p.F82F	.	.	.
GPR126	57211	broad.mit.edu	36	6	142753133	142753133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon6	c.G1184A	p.R395H	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143124371	143124371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon8	c.C5543A	p.S1848Y	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143127674	143127674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon7	c.C5473T	p.R1825W	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143134126	143134126	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon5	c.C3443T	p.S1148L	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143134866	143134866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon5	c.G2703A	p.E901E	.	.	.
PEX3	8504	broad.mit.edu	36	6	143835042	143835042	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003630	exon8	c.G631T	p.E211X	.	.	.
UTRN	7402	broad.mit.edu	36	6	144801627	144801627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon11	c.C1295T	p.A432V	.	.	.
UTRN	7402	broad.mit.edu	36	6	144810064	144810064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon14	c.G1639A	p.E547K	.	.	.
UTRN	7402	broad.mit.edu	36	6	144825635	144825635	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon22	c.C3006T	p.V1002V	.	.	.
UTRN	7402	broad.mit.edu	36	6	145198662	145198662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon69	c.C9719T	p.S3240F	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146287663	146287663	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon17	c.C3334T	p.R1112X	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146290065	146290065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon15	c.C3181T	p.R1061C	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147676774	147676774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127715	exon12	c.G1207A	p.E403K	.	.	.
LATS1	9113	broad.mit.edu	36	6	150047016	150047016	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004690	exon4	c.C902A	p.P301H	.	.	.
PLEKHG1	57480	broad.mit.edu	36	6	151172499	151172499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029884	exon11	c.G1214A	p.R405H	.	.	.
PLEKHG1	57480	broad.mit.edu	36	6	151203565	151203565	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029884	exon17	c.C3998T	p.P1333L	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151299756	151299756	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon12	c.G1380A	p.T460T	.	.	.
C6orf211	79624	broad.mit.edu	36	6	151821176	151821176	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024573	exon3	c.G168T	p.K56N	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151948889	151948889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon7	c.G1265A	p.R422Q	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151959352	151959352	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon9	c.C1657T	p.R553X	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151978345	151978345	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon10	c.G1785T	p.E595D	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152552174	152552174	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon43	c.A6779G	p.D2260G	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152574371	152574371	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon39	c.A6112C	p.I2038L	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152807327	152807327	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon30	c.C3770A	p.S1257Y	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152810362	152810362	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon29	c.A3614G	p.N1205S	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152816436	152816436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon25	c.G3026A	p.R1009Q	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152902796	152902796	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon3	c.C121T	p.L41L	.	.	.
FBXO5	26271	broad.mit.edu	36	6	153334114	153334114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012177	exon5	c.G1221A	p.T407T	.	.	.
MTRF1L	54516	broad.mit.edu	36	6	153352900	153352900	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019041	exon7	c.G966T	p.E322D	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155493085	155493085	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon3	c.G1036T	p.A346S	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155510967	155510967	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon6	c.T1835G	p.V612G	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157564116	157564116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017519	exon17	c.C4657T	p.R1553C	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157569825	157569825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017519	exon19	c.G5819A	p.R1940H	.	.	.
ZDHHC14	79683	broad.mit.edu	36	6	157883747	157883747	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153746	exon2	c.G388A	p.D130N	.	.	.
SNX9	51429	broad.mit.edu	36	6	158247160	158247160	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016224	exon7	c.T633C	p.F211F	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158433985	158433985	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003898	exon26	c.A3605G	p.D1202G	.	.	.
TMEM181	57583	broad.mit.edu	36	6	158966757	158966757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020823	exon13	c.C1503T	p.F501F	.	.	.
EZR	7430	broad.mit.edu	36	6	159126555	159126555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111077	exon5	c.C241T	p.R81W	.	.	.
SOD2	6648	broad.mit.edu	36	6	160023603	160023603	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024466	exon4	c.A464C	p.K155T	.	.	.
WTAP	9589	broad.mit.edu	36	6	160080015	160080015	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004906	exon3	c.C34T	p.R12X	.	.	.
TCP1	6950	broad.mit.edu	36	6	160120934	160120934	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030752	exon10	c.A1273C	p.N425H	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160161502	160161502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173516	exon19	c.C1526T	p.A509V	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160429111	160429111	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon42	c.G6262A	p.A2088T	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160431030	160431030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon44	c.C6560T	p.A2187V	.	.	.
LPA	4018	broad.mit.edu	36	6	160886468	160886468	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon34	c.C5392A	p.L1798I	.	.	.
PLG	5340	broad.mit.edu	36	6	161063490	161063490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000301	exon10	c.G1157A	p.R386Q	.	.	.
PLG	5340	broad.mit.edu	36	6	161080200	161080200	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000301	exon16	c.G1988A	p.R663Q	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161390078	161390078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon3	c.G784A	p.E262K	.	.	.
MYLIP	29116	broad.mit.edu	36	6	16253281	16253281	+	Silent	SNP	C	T	T	rs72833427	by1000genomes	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013262	exon6	c.C1002T	p.G334G	.	.	.
GMPR	2766	broad.mit.edu	36	6	16355117	16355117	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006877	exon2	c.C153T	p.I51I	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16436358	16436358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000332	exon8	c.C163T	p.H55Y	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166782222	166782222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021135	exon14	c.G1312A	p.D438N	.	.	.
FGFR1OP	11116	broad.mit.edu	36	6	167337760	167337760	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194429	exon5	c.C319T	p.R107X	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167674867	167674867	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031949	exon3	c.T1489G	p.F497V	.	.	.
KIF25	3834	broad.mit.edu	36	6	168182243	168182243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030615	exon5	c.C479T	p.A160V	.	.	.
WDR27	253769	broad.mit.edu	36	6	169810202	169810202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182552	exon5	c.G461A	p.R154Q	.	.	.
WDR27	253769	broad.mit.edu	36	6	169830952	169830952	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182552	exon2	c.T75C	p.V25V	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169898773	169898773	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018341	exon5	c.C451A	p.L151I	.	.	.
NUP153	9972	broad.mit.edu	36	6	17745583	17745583	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005124	exon16	c.G2244A	p.P748P	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17960230	17960230	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022113	exon7	c.C517T	p.R173X	.	.	.
KDM1B	221656	broad.mit.edu	36	6	18308686	18308686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153042	exon11	c.G863A	p.R288Q	.	.	.
KDM1B	221656	broad.mit.edu	36	6	18330169	18330169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153042	exon18	c.C1740T	p.G580G	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20232683	20232683	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080480	exon8	c.G842A	p.R281Q	.	.	.
PRL	5617	broad.mit.edu	36	6	22398525	22398525	+	Nonsense_Mutation	SNP	G	A	A	rs6238	byCluster;byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000948	exon4	c.C349T	p.R117X	.	.	.
HDGFL1	154150	broad.mit.edu	36	6	22677981	22677981	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138574	exon1	c.C198T	p.F66F	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24689172	24689172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168377	exon7	c.G1240A	p.A414T	.	.	.
FAM65B	9750	broad.mit.edu	36	6	24958905	24958905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015864	exon10	c.C697T	p.R233W	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25907120	25907120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005074	exon12	c.G1276A	p.E426K	.	.	.
BTN2A2	10385	broad.mit.edu	36	6	26500599	26500599	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006995	exon8	c.C997A	p.P333T	.	.	.
BTN3A1	11119	broad.mit.edu	36	6	26521682	26521682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145008	exon10	c.G1169A	p.R390Q	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27477102	27477102	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076781	exon3	c.G974T	p.R325I	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27527202	27527202	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007149	exon6	c.G2115T	p.K705N	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27532629	27532629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007149	exon5	c.G253A	p.E85K	.	.	.
HIST1H2BL	8340	broad.mit.edu	36	6	27883284	27883284	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003519	exon1	c.A380G	p.X127X	.	.	.
OR2B6	26212	broad.mit.edu	36	6	28033270	28033270	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012367	exon1	c.A273C	p.V91V	.	.	.
ZNF192	7745	broad.mit.edu	36	6	28224236	28224236	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006298	exon2	c.C72T	p.I24I	.	.	.
GPX5	2880	broad.mit.edu	36	6	28601847	28601847	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003996	exon1	c.G78T	p.E26D	.	.	.
ZNF311	282890	broad.mit.edu	36	6	29071034	29071034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010877	exon7	c.G1724T	p.R575I	.	.	.
ZNF311	282890	broad.mit.edu	36	6	29071122	29071122	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010877	exon7	c.C1636T	p.R546X	.	.	.
OR2J3	442186	broad.mit.edu	36	6	29188269	29188269	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005216	exon1	c.T623C	p.I208T	.	.	.
MOG	4340	broad.mit.edu	36	6	29746072	29746072	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002433	exon6	c.A628G	p.T210A	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30230169	30230169	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006778	exon7	c.C1002A	p.F334L	.	.	.
MDC1	9656	broad.mit.edu	36	6	30787840	30787840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014641	exon5	c.G1858A	p.A620T	.	.	.
MICB	4277	broad.mit.edu	36	6	31582058	31582058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005931	exon3	c.C485T	p.A162V	.	.	.
TUBB2B	347733	broad.mit.edu	36	6	3171445	3171445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178012	exon3	c.C224T	p.S75L	.	.	.
MSH5	4439	broad.mit.edu	36	6	31836534	31836534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025259	exon20	c.G1952A	p.R651Q	.	.	.
SLC44A4	80736	broad.mit.edu	36	6	31947294	31947294	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178044	exon7	c.A427G	p.T143A	.	.	.
TNXB	7148	broad.mit.edu	36	6	32123667	32123667	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon30	c.C10140T	p.F3380F	.	.	.
TNXB	7148	broad.mit.edu	36	6	32125929	32125929	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon27	c.A9257G	p.D3086G	.	.	.
TNXB	7148	broad.mit.edu	36	6	32128603	32128603	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon26	c.C8931T	p.F2977F	.	.	.
ATF6B	1388	broad.mit.edu	36	6	32203954	32203954	+	Silent	SNP	C	T	T	rs1129551	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004381	exon1	c.G9A	p.E3E	.	.	.
FKBPL	63943	broad.mit.edu	36	6	32204872	32204872	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022110	exon2	c.C664T	p.R222X	.	.	.
NOTCH4	4855	broad.mit.edu	36	6	32277014	32277014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004557	exon22	c.A3997T	p.K1333X	.	.	.
PSMB9	5698	broad.mit.edu	36	6	32933814	32933814	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002800	exon4	c.T315G	p.N105K	.	.	.
BRD2	6046	broad.mit.edu	36	6	33056338	33056338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005104	exon13	c.G2271A	p.A757A	.	.	.
HLA-DPA1	3113	broad.mit.edu	36	6	33145417	33145417	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033554	exon2	c.A325G	p.N109D	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33247222	33247222	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon41	c.G3000T	p.K1000N	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33262417	33262417	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon5	c.C763T	p.L255F	.	.	.
RING1	6015	broad.mit.edu	36	6	33287750	33287750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002931	exon6	c.C1112T	p.A371V	.	.	.
VPS52	6293	broad.mit.edu	36	6	33344841	33344841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022553	exon6	c.G476A	p.R159Q	.	.	.
ZBTB22	9278	broad.mit.edu	36	6	33391179	33391179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005453	exon2	c.G1493A	p.S498N	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34935036	34935036	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017754	exon14	c.A2925G	p.L975L	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35304463	35304463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon3	c.C303A	p.F101L	.	.	.
C6orf81	221481	broad.mit.edu	36	6	35823064	35823064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145028	exon4	c.G574A	p.E192K	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35946070	35946070	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon10	c.G957T	p.E319D	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35964570	35964570	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon4	c.A302C	p.Q101P	.	.	.
SLC26A8	116369	broad.mit.edu	36	6	36027233	36027233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052961	exon18	c.G2254A	p.A752T	.	.	.
MAPK14	1432	broad.mit.edu	36	6	36183305	36183305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001315	exon11	c.G937A	p.D313N	.	.	.
C6orf89	221477	broad.mit.edu	36	6	36975304	36975304	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152734	exon2	c.G127T	p.E43X	.	.	.
C6orf89	221477	broad.mit.edu	36	6	36999109	36999109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152734	exon8	c.G979A	p.D327N	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37548220	37548220	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015050	exon16	c.G1668A	p.S556S	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37730653	37730653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153487	exon5	c.C613T	p.R205W	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38898774	38898774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon25	c.G3055A	p.D1019N	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38918421	38918421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon33	c.C3958T	p.R1320C	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38939645	38939645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon43	c.C5678T	p.S1893F	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39011383	39011383	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon75	c.T10844C	p.V3615A	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39065788	39065788	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon86	c.T12425G	p.F4142C	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39141989	39141989	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002062	exon5	c.C441A	p.I147I	.	.	.
KCNK5	8645	broad.mit.edu	36	6	39267237	39267237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003740	exon5	c.G907A	p.D303N	.	.	.
KCNK16	83795	broad.mit.edu	36	6	39394786	39394786	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135106	exon2	c.C315T	p.V105V	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4014070	4014070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173563	exon7	c.G1386A	p.P462P	.	.	.
APOBEC2	10930	broad.mit.edu	36	6	41137247	41137247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006789	exon2	c.G334A	p.D112N	.	.	.
TREM1	54210	broad.mit.edu	36	6	41358128	41358128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018643	exon2	c.G389A	p.R130H	.	.	.
NCR2	9436	broad.mit.edu	36	6	41426496	41426496	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004828	exon5	c.T747G	p.V249V	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42340466	42340466	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033502	exon7	c.A1589G	p.H530R	.	.	.
UBR2	23304	broad.mit.edu	36	6	42712730	42712730	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon15	c.A1678C	p.K560Q	.	.	.
UBR2	23304	broad.mit.edu	36	6	42739082	42739082	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon32	c.C3645T	p.C1215C	.	.	.
UBR2	23304	broad.mit.edu	36	6	42741954	42741954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon34	c.C3874T	p.R1292C	.	.	.
SRF	6722	broad.mit.edu	36	6	43254021	43254021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003131	exon5	c.G1174A	p.A392T	.	.	.
CUL9	23113	broad.mit.edu	36	6	43274378	43274378	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon12	c.C2857T	p.R953X	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43511492	43511492	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198934	exon5	c.G1634A	p.R545Q	.	.	.
GTPBP2	54676	broad.mit.edu	36	6	43700676	43700676	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019096	exon6	c.C807G	p.H269Q	.	.	.
HSP90AB1	3326	broad.mit.edu	36	6	44325133	44325133	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007355	exon3	c.G189A	p.S63S	.	.	.
AARS2	57505	broad.mit.edu	36	6	44379020	44379020	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020745	exon15	c.G2126T	p.G709V	.	.	.
AARS2	57505	broad.mit.edu	36	6	44380006	44380006	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020745	exon14	c.A1897G	p.T633A	.	.	.
CDC5L	988	broad.mit.edu	36	6	44522353	44522353	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001253	exon16	c.A2336G	p.E779G	.	.	.
SUPT3H	8464	broad.mit.edu	36	6	45037525	45037525	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181356	exon9	c.C556T	p.R186X	.	.	.
RUNX2	860	broad.mit.edu	36	6	45622832	45622832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004348	exon7	c.C1336T	p.P446S	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46769595	46769595	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010870	exon1	c.C5771A	p.S1924Y	.	.	.
MEP1A	4224	broad.mit.edu	36	6	46908829	46908829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005588	exon11	c.C1204T	p.R402C	.	.	.
GPR116	221395	broad.mit.edu	36	6	46942622	46942622	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098518	exon13	c.T1833G	p.A611A	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47955290	47955290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013732	exon3	c.C1249T	p.R417C	.	.	.
MUT	4594	broad.mit.edu	36	6	49535078	49535078	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000255	exon2	c.G61T	p.E21X	.	.	.
RHAG	6005	broad.mit.edu	36	6	49693849	49693849	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000324	exon3	c.C383A	p.S128Y	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862492	49862492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138733	exon1	c.G368A	p.R123H	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862855	49862855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138733	exon1	c.C5A	p.S2Y	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50826901	50826901	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172238	exon7	c.C1044T	p.F348F	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50913678	50913678	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003221	exon5	c.C853T	p.R285X	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51990310	51990310	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon34	c.T5457C	p.C1819C	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51998759	51998759	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon32	c.G3808A	p.E1270K	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52001101	52001101	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon30	c.G3372T	p.E1124D	.	.	.
FBXO9	26268	broad.mit.edu	36	6	53070564	53070564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012347	exon12	c.G1321A	p.A441T	.	.	.
FARS2	10667	broad.mit.edu	36	6	5313969	5313969	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006567	exon2	c.A167C	p.K56T	.	.	.
GCLC	2729	broad.mit.edu	36	6	53471640	53471640	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001498	exon16	c.A1787C	p.E596A	.	.	.
LRRC1	55227	broad.mit.edu	36	6	53814979	53814979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018214	exon2	c.G272A	p.R91Q	.	.	.
LRRC1	55227	broad.mit.edu	36	6	53869614	53869614	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018214	exon6	c.G532T	p.E178X	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56043507	56043507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon21	c.C2014T	p.L672F	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56143550	56143550	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon5	c.T882G	p.I294M	.	.	.
DST	667	broad.mit.edu	36	6	56462288	56462288	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon67	c.A12967C	p.N4323H	.	.	.
DST	667	broad.mit.edu	36	6	56482586	56482586	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon55	c.C10956T	p.I3652I	.	.	.
DST	667	broad.mit.edu	36	6	56541241	56541241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon36	c.G6121A	p.A2041T	.	.	.
DST	667	broad.mit.edu	36	6	56541327	56541327	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon36	c.A6035C	p.K2012T	.	.	.
DST	667	broad.mit.edu	36	6	56590790	56590790	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.G6001T	p.D2001Y	.	.	.
DST	667	broad.mit.edu	36	6	56590874	56590874	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.A5917G	p.T1973A	.	.	.
DST	667	broad.mit.edu	36	6	56592697	56592697	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.A4094C	p.K1365T	.	.	.
DST	667	broad.mit.edu	36	6	56604787	56604787	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon15	c.G2205T	p.E735D	.	.	.
KIAA1586	57691	broad.mit.edu	36	6	57026067	57026067	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020931	exon4	c.G811T	p.E271X	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57119858	57119858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015555	exon10	c.G1016A	p.R339Q	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120721	57120721	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015555	exon10	c.T1879C	p.S627P	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120800	57120800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015555	exon10	c.G1958A	p.R653Q	.	.	.
KHDRBS2	202559	broad.mit.edu	36	6	62669153	62669153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152688	exon5	c.G566A	p.G189D	.	.	.
BAI3	577	broad.mit.edu	36	6	69405682	69405682	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001704	exon3	c.C394T	p.R132X	.	.	.
BAI3	577	broad.mit.edu	36	6	69697212	69697212	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001704	exon4	c.A798G	p.R266R	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71066580	71066580	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001851	exon4	c.G186A	p.Q62Q	.	.	.
KHDC1	80759	broad.mit.edu	36	6	74008017	74008017	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030568	exon4	c.G451T	p.V151L	.	.	.
CD109	135228	broad.mit.edu	36	6	74586947	74586947	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon32	c.A4102C	p.N1368H	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75894765	75894765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon38	c.G6307A	p.D2103N	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75908558	75908558	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon27	c.G4867T	p.D1623Y	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75950362	75950362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon9	c.G1216A	p.A406T	.	.	.
TMEM30A	55754	broad.mit.edu	36	6	76022704	76022704	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018247	exon7	c.G920A	p.R307Q	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76771809	76771809	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001563	exon10	c.C1050A	p.L350L	.	.	.
ELOVL4	6785	broad.mit.edu	36	6	80691405	80691405	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022726	exon3	c.A352G	p.N118D	.	.	.
PGM3	5238	broad.mit.edu	36	6	83936835	83936835	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015599	exon12	c.G1447T	p.D483Y	.	.	.
PGM3	5238	broad.mit.edu	36	6	83946405	83946405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015599	exon7	c.G788A	p.G263E	.	.	.
ME1	4199	broad.mit.edu	36	6	83995288	83995288	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002395	exon10	c.G1108T	p.E370X	.	.	.
CYB5R4	51167	broad.mit.edu	36	6	84659964	84659964	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016230	exon3	c.C234T	p.F78F	.	.	.
MRAP2	112609	broad.mit.edu	36	6	84855547	84855547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138409	exon4	c.G246T	p.E82D	.	.	.
MRAP2	112609	broad.mit.edu	36	6	84855756	84855756	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138409	exon4	c.G455T	p.G152V	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84940495	84940495	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014895	exon16	c.A2157C	p.G719G	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782340	87782340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000865	exon2	c.C569T	p.A190V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88025501	88025501	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.T5435G	p.F1812C	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88180316	88180316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031743	exon4	c.G262A	p.D88N	.	.	.
RARS2	57038	broad.mit.edu	36	6	88315060	88315060	+	De_novo_Start_OutOfFrame	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020320	exon6	c.T419G	p.F140C	.	.	.
ORC3	23595	broad.mit.edu	36	6	88388422	88388422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012381	exon11	c.C1157T	p.A386V	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89695636	89695636	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003800	exon3	c.G244T	p.E82X	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89695653	89695653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003800	exon3	c.G227A	p.R76Q	.	.	.
GABRR2	2570	broad.mit.edu	36	6	90024391	90024391	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002043	exon9	c.C1190A	p.S397X	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90388384	90388384	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014942	exon10	c.G815A	p.R272Q	.	.	.
MDN1	23195	broad.mit.edu	36	6	90416627	90416627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon97	c.G16043A	p.R5348Q	.	.	.
MDN1	23195	broad.mit.edu	36	6	90454589	90454589	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon67	c.C11284T	p.R3762C	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90629057	90629057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon7	c.C908T	p.S303L	.	.	.
GJA10	84694	broad.mit.edu	36	6	90661744	90661744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032602	exon1	c.G836T	p.R279I	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94123384	94123384	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004440	exon5	c.A1096C	p.R366R	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97733046	97733046	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198468	exon18	c.C2673A	p.F891L	.	.	.
SFRS18	25957	broad.mit.edu	36	6	99957170	99957170	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015491	exon10	c.G1294T	p.E432X	.	.	.
ZAN	7455	broad.mit.edu	36	7	100199635	100199635	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173059	exon22	c.C4147A	p.L1383I	.	.	.
ZAN	7455	broad.mit.edu	36	7	100201012	100201012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173059	exon23	c.G4369A	p.V1457M	.	.	.
ZAN	7455	broad.mit.edu	36	7	100204210	100204210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173059	exon27	c.G5083A	p.D1695N	.	.	.
MUC17	140453	broad.mit.edu	36	7	100471114	100471114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C9697T	p.P3233S	.	.	.
MUC17	140453	broad.mit.edu	36	7	100488033	100488033	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon13	c.G13470A	p.T4490T	.	.	.
CUX1	1523	broad.mit.edu	36	7	101628853	101628853	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181552	exon16	c.G1946T	p.R649I	.	.	.
LRRC17	10234	broad.mit.edu	36	7	102361640	102361640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005824	exon2	c.C44T	p.A15V	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102806187	102806187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206883	exon17	c.G1727A	p.R576Q	.	.	.
RELN	5649	broad.mit.edu	36	7	103017291	103017291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon28	c.C4133T	p.S1378F	.	.	.
PUS7	54517	broad.mit.edu	36	7	104893021	104893021	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019042	exon13	c.C1602T	p.F534F	.	.	.
RINT1	60561	broad.mit.edu	36	7	104970127	104970127	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021930	exon4	c.C310T	p.R104X	.	.	.
ATXN7L1	222255	broad.mit.edu	36	7	105303502	105303502	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020725	exon2	c.A242C	p.N81T	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106309805	106309805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon7	c.G2546A	p.R849Q	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107111005	107111005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000441	exon7	c.C888T	p.I296I	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107458655	107458655	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon32	c.A4824C	p.E1608D	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107465240	107465240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon30	c.C4508T	p.A1503V	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107479780	107479780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon26	c.C3914T	p.A1305V	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107623495	107623495	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037132	exon12	c.G1409T	p.R470M	.	.	.
C7orf66	154907	broad.mit.edu	36	7	108311530	108311530	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024607	exon2	c.C118A	p.L40I	.	.	.
C7orf53	286006	broad.mit.edu	36	7	111914223	111914223	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134468	exon3	c.A137G	p.D46G	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113305370	113305370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002711	exon4	c.G3013A	p.E1005K	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11423663	11423663	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015204	exon16	c.A3476C	p.K1159T	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11452317	11452317	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015204	exon13	c.T2960C	p.V987A	.	.	.
TES	26136	broad.mit.edu	36	7	115661893	115661893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015641	exon2	c.G97A	p.E33K	.	.	.
CAV2	858	broad.mit.edu	36	7	115927706	115927706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001233	exon2	c.C307T	p.L103F	.	.	.
MET	4233	broad.mit.edu	36	7	116204715	116204715	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000245	exon16	c.A3296G	p.D1099G	.	.	.
CFTR	1080	broad.mit.edu	36	7	117022280	117022280	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon15	c.C2551T	p.R851X	.	.	.
CFTR	1080	broad.mit.edu	36	7	117094279	117094279	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon27	c.A4324C	p.S1442R	.	.	.
RNF148	378925	broad.mit.edu	36	7	122129678	122129678	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198085	exon1	c.G363T	p.E121D	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122550490	122550490	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022444	exon12	c.G1276T	p.E426X	.	.	.
IQUB	154865	broad.mit.edu	36	7	122892193	122892193	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon10	c.G1688T	p.R563I	.	.	.
IQUB	154865	broad.mit.edu	36	7	122939487	122939487	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon2	c.A144C	p.G48G	.	.	.
ASB15	142685	broad.mit.edu	36	7	123043656	123043656	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080928	exon4	c.C163A	p.H55N	.	.	.
ASB15	142685	broad.mit.edu	36	7	123056482	123056482	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080928	exon8	c.C1198A	p.L400I	.	.	.
HYAL4	23553	broad.mit.edu	36	7	123296011	123296011	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012269	exon3	c.C448T	p.R150X	.	.	.
GPR37	2861	broad.mit.edu	36	7	124174248	124174248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005302	exon2	c.G1409A	p.R470H	.	.	.
PAX4	5078	broad.mit.edu	36	7	127040322	127040322	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006193	exon6	c.G681T	p.M227I	.	.	.
TSPAN33	340348	broad.mit.edu	36	7	128594938	128594938	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178562	exon8	c.A839G	p.D280G	.	.	.
CPA4	51200	broad.mit.edu	36	7	129735403	129735403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163446	exon7	c.G624A	p.T208T	.	.	.
TSGA13	114960	broad.mit.edu	36	7	130014649	130014649	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052933	exon5	c.G271T	p.D91Y	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131468460	131468460	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon31	c.A5477G	p.D1826G	.	.	.
SLC35B4	84912	broad.mit.edu	36	7	133631735	133631735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032826	exon9	c.G697A	p.G233R	.	.	.
AKR1B1	231	broad.mit.edu	36	7	133783301	133783301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001628	exon7	c.G712A	p.A238T	.	.	.
CALD1	800	broad.mit.edu	36	7	134293402	134293402	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon10	c.A1291C	p.S431R	.	.	.
CALD1	800	broad.mit.edu	36	7	134300612	134300612	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon14	c.G1621T	p.D541Y	.	.	.
WDR91	29062	broad.mit.edu	36	7	134546702	134546702	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014149	exon1	c.G93A	p.E31E	.	.	.
STRA8	346673	broad.mit.edu	36	7	134593782	134593782	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182489	exon9	c.T991G	p.X331E	.	.	.
CNOT4	4850	broad.mit.edu	36	7	134748899	134748899	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190850	exon6	c.T565C	p.S189P	.	.	.
CNOT4	4850	broad.mit.edu	36	7	134750541	134750541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190850	exon4	c.G383A	p.R128Q	.	.	.
NUP205	23165	broad.mit.edu	36	7	134938234	134938234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon18	c.G2654A	p.G885E	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137912778	137912778	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003852	exon14	c.C2059T	p.R687X	.	.	.
SVOPL	136306	broad.mit.edu	36	7	137931725	137931725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174959	exon11	c.G988A	p.E330K	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138095104	138095104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130840	exon7	c.G572A	p.R191Q	.	.	.
ZC3HAV1L	92092	broad.mit.edu	36	7	138369905	138369905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080660	exon2	c.G425A	p.S142N	.	.	.
UBN2	254048	broad.mit.edu	36	7	138607614	138607614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173569	exon9	c.C1603T	p.R535C	.	.	.
ETV1	2115	broad.mit.edu	36	7	13937894	13937894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163147	exon8	c.G560A	p.R187H	.	.	.
SLC37A3	84255	broad.mit.edu	36	7	139728726	139728726	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032295	exon2	c.T70C	p.F24L	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139948196	139948196	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015689	exon1	c.C471A	p.L157L	.	.	.
CLEC5A	23601	broad.mit.edu	36	7	141292509	141292509	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013252	exon2	c.T53G	p.V18G	.	.	.
MGAM	8972	broad.mit.edu	36	7	141376661	141376661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon11	c.G1252A	p.D418N	.	.	.
EPHB6	2051	broad.mit.edu	36	7	142274131	142274131	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004445	exon9	c.T1397C	p.V466A	.	.	.
TAS2R40	259286	broad.mit.edu	36	7	142630103	142630103	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176882	exon1	c.C810A	p.I270I	.	.	.
EPHA1	2041	broad.mit.edu	36	7	142802699	142802699	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005232	exon12	c.C1918T	p.R640X	.	.	.
CTAGE6P	340307	broad.mit.edu	36	7	143084327	143084327	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178561	exon1	c.A1358C	p.K453T	.	.	.
OR2A5	393046	broad.mit.edu	36	7	143379197	143379197	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012365	exon1	c.T770C	p.V257A	.	.	.
DGKB	1607	broad.mit.edu	36	7	14344779	14344779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145695	exon22	c.T2011C	p.S671P	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146436254	146436254	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon5	c.C633A	p.V211V	.	.	.
DGKB	1607	broad.mit.edu	36	7	14700323	14700323	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145695	exon8	c.G613T	p.E205X	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147500461	147500461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon18	c.G2968A	p.D990N	.	.	.
DGKB	1607	broad.mit.edu	36	7	14847370	14847370	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145695	exon1	c.T44G	p.F15C	.	.	.
ZNF282	8427	broad.mit.edu	36	7	148535462	148535462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003575	exon4	c.G799A	p.E267K	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149805543	149805543	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175571	exon5	c.G1740T	p.K580N	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149956420	149956420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024711	exon3	c.G199A	p.E67K	.	.	.
AGAP3	116988	broad.mit.edu	36	7	150470525	150470525	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031946	exon16	c.G2144A	p.R715H	.	.	.
NUB1	51667	broad.mit.edu	36	7	150695938	150695938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016118	exon10	c.G1046A	p.R349Q	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151330858	151330858	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145292	exon6	c.G785T	p.R262I	.	.	.
MLL3	58508	broad.mit.edu	36	7	151686618	151686618	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon2	c.G237A	p.T79T	.	.	.
XRCC2	7516	broad.mit.edu	36	7	151976932	151976932	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005431	exon3	c.C571A	p.L191I	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154398469	154398469	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007349	exon6	c.C944G	p.A315G	.	.	.
HTR5A	3361	broad.mit.edu	36	7	154507001	154507001	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024012	exon2	c.C945T	p.I315I	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157054378	157054378	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon20	c.T2792C	p.M931T	.	.	.
ISPD	729920	broad.mit.edu	36	7	16222330	16222330	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101417	exon8	c.T987G	p.F329L	.	.	.
TSPAN13	27075	broad.mit.edu	36	7	16785154	16785154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014399	exon5	c.G428A	p.S143N	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18596492	18596492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178425	exon3	c.G273T	p.Q91H	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18960332	18960332	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178423	exon24	c.G2967A	p.P989P	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20386953	20386953	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002214	exon5	c.G775A	p.A259T	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20653722	20653722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163941	exon10	c.G1021A	p.A341T	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20687705	20687705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon6	c.G425A	p.R142Q	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21594231	21594231	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon10	c.C1735T	p.L579L	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21807290	21807290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon62	c.G10059A	p.S3353S	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21898640	21898640	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon77	c.T12602C	p.V4201A	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21908489	21908489	+	Missense_Mutation	SNP	T	G	G	rs16891988	byCluster	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127371	exon9	c.A1203C	p.Q401H	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23325309	23325309	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006547	exon11	c.T1293G	p.L431L	.	.	.
STK31	56164	broad.mit.edu	36	7	23743130	23743130	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122833	exon8	c.G856T	p.E286X	.	.	.
STK31	56164	broad.mit.edu	36	7	23775214	23775214	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122833	exon12	c.T1423A	p.F475I	.	.	.
STK31	56164	broad.mit.edu	36	7	23793060	23793060	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122833	exon20	c.A2410C	p.N804H	.	.	.
MPP6	51678	broad.mit.edu	36	7	24655832	24655832	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016447	exon5	c.C347A	p.S116Y	.	.	.
MPP6	51678	broad.mit.edu	36	7	24656698	24656698	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016447	exon6	c.C493T	p.R165X	.	.	.
NPVF	64111	broad.mit.edu	36	7	25232864	25232864	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022150	exon2	c.C445T	p.Q149X	.	.	.
CREB5	9586	broad.mit.edu	36	7	28513817	28513817	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004904	exon4	c.C207T	p.S69S	.	.	.
C7orf41	222166	broad.mit.edu	36	7	30141340	30141340	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152793	exon1	c.C63A	p.L21L	.	.	.
GARS	2617	broad.mit.edu	36	7	30605016	30605016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002047	exon2	c.G302A	p.R101H	.	.	.
NEUROD6	63974	broad.mit.edu	36	7	31344845	31344845	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022728	exon2	c.T563C	p.F188S	.	.	.
BBS9	27241	broad.mit.edu	36	7	33161782	33161782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033605	exon4	c.G271A	p.E91K	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36333031	36333031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100425	exon7	c.C1426T	p.R476C	.	.	.
ANLN	54443	broad.mit.edu	36	7	36402413	36402413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018685	exon2	c.G32A	p.R11Q	.	.	.
ANLN	54443	broad.mit.edu	36	7	36458715	36458715	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018685	exon24	c.A3356C	p.K1119T	.	.	.
AOAH	313	broad.mit.edu	36	7	36546542	36546542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001637	exon16	c.C1214T	p.S405F	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37882997	37882997	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016616	exon12	c.T857C	p.L286P	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37894406	37894406	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016616	exon15	c.T1250G	p.L417X	.	.	.
POU6F2	11281	broad.mit.edu	36	7	39092109	39092109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007252	exon3	c.C143T	p.A48V	.	.	.
SDK1	221935	broad.mit.edu	36	7	3993388	3993388	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon14	c.C2039A	p.S680Y	.	.	.
CDK13	8621	broad.mit.edu	36	7	40101090	40101090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003718	exon14	c.G4525A	p.G1509R	.	.	.
GLI3	2737	broad.mit.edu	36	7	41973775	41973775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon14	c.G2375A	p.R792Q	.	.	.
GLI3	2737	broad.mit.edu	36	7	42029616	42029616	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon10	c.C1473T	p.F491F	.	.	.
GLI3	2737	broad.mit.edu	36	7	42046248	42046248	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon7	c.C942A	p.P314P	.	.	.
AEBP1	165	broad.mit.edu	36	7	44116331	44116331	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129	exon11	c.A1261G	p.T421A	.	.	.
GCK	2645	broad.mit.edu	36	7	44156129	44156129	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000162	exon5	c.C543T	p.V181V	.	.	.
NUDCD3	23386	broad.mit.edu	36	7	44392179	44392179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015332	exon6	c.G1042A	p.D348N	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47802148	47802148	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon55	c.A8319G	p.T2773T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48283761	48283761	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.G3789T	p.E1263D	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48284702	48284702	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.T4730C	p.V1577A	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48289286	48289286	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon16	c.A7786G	p.K2596E	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48289933	48289933	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon16	c.G8433T	p.K2811N	.	.	.
RADIL	55698	broad.mit.edu	36	7	4840776	4840776	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	C	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018059	exon4	c.C1404G	p.R468R	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48597380	48597380	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon55	c.A14427C	p.G4809G	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4867733	4867733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020144	exon1	c.G235A	p.E79K	.	.	.
MMD2	221938	broad.mit.edu	36	7	4916154	4916154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100600	exon6	c.C493T	p.R165C	.	.	.
FIGNL1	63979	broad.mit.edu	36	7	50480913	50480913	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042762	exon4	c.G1567T	p.E523X	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57191862	57191862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon5	c.G1202T	p.R401I	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57198337	57198337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon3	c.G70A	p.E24K	.	.	.
EIF2AK1	27102	broad.mit.edu	36	7	6049106	6049106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134335	exon8	c.G772A	p.D258N	.	.	.
CYTH3	9265	broad.mit.edu	36	7	6177434	6177434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004227	exon7	c.G486A	p.A162A	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63620263	63620263	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178558	exon4	c.G304T	p.D102Y	.	.	.
RABGEF1	27342	broad.mit.edu	36	7	65911377	65911377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014504	exon9	c.C1147T	p.R383C	.	.	.
C7orf26	79034	broad.mit.edu	36	7	6606303	6606303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024067	exon4	c.C899T	p.T300M	.	.	.
TYW1	55253	broad.mit.edu	36	7	66101320	66101320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018264	exon3	c.G217A	p.D73N	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70768452	70768452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon7	c.G1201A	p.V401I	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72529329	72529329	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032408	exon7	c.G2398T	p.E800X	.	.	.
TBL2	26608	broad.mit.edu	36	7	72625600	72625600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012453	exon4	c.G584A	p.G195D	.	.	.
TBL2	26608	broad.mit.edu	36	7	72626342	72626342	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012453	exon3	c.A308C	p.K103T	.	.	.
ELN	2006	broad.mit.edu	36	7	73095415	73095415	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081755	exon8	c.G408T	p.V136V	.	.	.
HIP1	3092	broad.mit.edu	36	7	75023383	75023383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005338	exon18	c.C1710T	p.F570F	.	.	.
HIP1	3092	broad.mit.edu	36	7	75030223	75030223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005338	exon11	c.G972A	p.E324E	.	.	.
MDH2	4191	broad.mit.edu	36	7	75531644	75531644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005918	exon7	c.C685T	p.R229W	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77038361	77038361	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002835	exon2	c.A130G	p.T44A	.	.	.
SEMA3C	10512	broad.mit.edu	36	7	80295973	80295973	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006379	exon3	c.A128C	p.E43A	.	.	.
PCLO	27445	broad.mit.edu	36	7	82422561	82422561	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.A5644C	p.K1882Q	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423980	82423980	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.T4225G	p.L1409V	.	.	.
PCLO	27445	broad.mit.edu	36	7	82623239	82623239	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon2	c.G654A	p.P218P	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83430520	83430520	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006080	exon16	c.G1797A	p.P599P	.	.	.
DBF4	10926	broad.mit.edu	36	7	87375116	87375116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006716	exon12	c.G1727A	p.R576Q	.	.	.
STEAP2	261729	broad.mit.edu	36	7	89697181	89697181	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152999	exon4	c.T1080G	p.Y360X	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91564137	91564137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon41	c.C9904T	p.R3302W	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91818316	91818316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019004	exon8	c.A1202G	p.D401G	.	.	.
CDK6	1021	broad.mit.edu	36	7	92242055	92242055	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001259	exon3	c.G260A	p.R87Q	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570221	92570221	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.A3126G	p.E1042E	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92599195	92599195	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.A4026G	p.G1342G	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602207	92602207	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.T1014G	p.N338K	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93890209	93890209	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon40	c.T2408G	p.I803S	.	.	.
CASD1	64921	broad.mit.edu	36	7	94004982	94004982	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022900	exon9	c.A1106C	p.Q369P	.	.	.
PON1	5444	broad.mit.edu	36	7	94766343	94766343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000446	exon9	c.G917A	p.R306Q	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95277725	95277725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004411	exon3	c.G194T	p.S65I	.	.	.
TAC1	6863	broad.mit.edu	36	7	97200990	97200990	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013997	exon3	c.T143G	p.F48C	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97659135	97659135	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014916	exon11	c.C1422T	p.F474F	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97777721	97777721	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018842	exon9	c.G927A	p.P309P	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98366193	98366193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon25	c.C3395T	p.A1132V	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98440739	98440739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon67	c.C10456T	p.R3486W	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98447818	98447818	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon71	c.C11397T	p.F3799F	.	.	.
CPSF4	10898	broad.mit.edu	36	7	98889649	98889649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081559	exon7	c.C620T	p.A207V	.	.	.
OR2AE1	81392	broad.mit.edu	36	7	99312110	99312110	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005276	exon1	c.G483A	p.A161A	.	.	.
TRIM4	89122	broad.mit.edu	36	7	99328140	99328140	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033017	exon7	c.G1085T	p.R362I	.	.	.
ZNF3	7551	broad.mit.edu	36	7	99507530	99507530	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032924	exon6	c.C513T	p.S171S	.	.	.
GIGYF1	64599	broad.mit.edu	36	7	100122271	100122273	+	In_Frame_Del	DEL	CCT	-	-	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	CCT	CCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022574	exon7	c.629_631del	p.210_211del	.	.	.
AP4M1	9179	broad.mit.edu	36	7	99540804	99540807	+	Frame_Shift_Del	DEL	GGGC	-	-	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	GGGC	GGGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004722	exon10	c.733_736del	p.245_246del	.	.	.
ESRP1	54845	broad.mit.edu	36	8	95755786	95755787	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017697	exon12	c.1527_1528insA	p.H509fs	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101259232	101259232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003114	exon4	c.G313A	p.E105K	.	.	.
ANKRD46	157567	broad.mit.edu	36	8	101611075	101611075	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198401	exon4	c.C163T	p.R55X	.	.	.
PABPC1	26986	broad.mit.edu	36	8	101799288	101799288	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002568	exon3	c.T392C	p.V131A	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102748035	102748035	+	Silent	SNP	G	A	A	rs61732855	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024915	exon16	c.G1806A	p.S602S	.	.	.
RRM2B	50484	broad.mit.edu	36	8	103300296	103300296	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015713	exon6	c.T606C	p.F202F	.	.	.
UBR5	51366	broad.mit.edu	36	8	103335759	103335759	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015902	exon59	c.C8347A	p.L2783I	.	.	.
ODF1	4956	broad.mit.edu	36	8	103633319	103633319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024410	exon1	c.G188A	p.R63H	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10433539	10433539	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198464	exon5	c.C885T	p.I295I	.	.	.
FZD6	8323	broad.mit.edu	36	8	104405903	104405903	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164615	exon4	c.G393A	p.E131E	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104508586	104508586	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015420	exon5	c.G1010T	p.R337I	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104847801	104847801	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon3	c.G558A	p.Q186Q	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105018041	105018041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon13	c.G2462A	p.R821Q	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10504965	10504965	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon4	c.A4053C	p.E1351D	.	.	.
LRP12	29967	broad.mit.edu	36	8	105579141	105579141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013437	exon5	c.C815T	p.S272F	.	.	.
ABRA	137735	broad.mit.edu	36	8	107842563	107842563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139166	exon2	c.C1024T	p.R342C	.	.	.
RSPO2	340419	broad.mit.edu	36	8	109070572	109070572	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178565	exon3	c.G171T	p.Q57H	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169164	110169164	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003301	exon1	c.A247G	p.I83V	.	.	.
TRHR	7201	broad.mit.edu	36	8	110200694	110200694	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003301	exon2	c.A1031C	p.K344T	.	.	.
NUDCD1	84955	broad.mit.edu	36	8	110374800	110374800	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032869	exon4	c.A589C	p.S197R	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110520395	110520395	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon32	c.T3854G	p.L1285R	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110522725	110522725	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon34	c.A4145C	p.K1382T	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110560973	110560973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon54	c.C9107A	p.S3036Y	.	.	.
EBAG9	9166	broad.mit.edu	36	8	110632248	110632248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198120	exon2	c.C19T	p.R7W	.	.	.
EBAG9	9166	broad.mit.edu	36	8	110645881	110645881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198120	exon7	c.G559A	p.E187K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113387440	113387440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon51	c.C8043T	p.S2681S	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113416849	113416849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon45	c.C7050T	p.I2350I	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113419098	113419098	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon43	c.C6691T	p.R2231X	 CSMD3,kidney,NS,Substitution - Missense,+1 	.	.
CSMD3	114788	broad.mit.edu	36	8	113472163	113472163	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon36	c.A5840C	p.K1947T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113726555	113726555	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon20	c.C3269A	p.S1090Y	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114180268	114180268	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon5	c.C810A	p.T270T	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116685372	116685372	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon4	c.T1999C	p.S667P	.	.	.
C8orf85	441376	broad.mit.edu	36	8	118019698	118019698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025357	exon1	c.G35T	p.R12I	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120667725	120667725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130863	exon15	c.C1249A	p.P417T	.	.	.
DEPDC6	64798	broad.mit.edu	36	8	121088286	121088286	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022783	exon7	c.G987T	p.K329N	.	.	.
FBXO32	114907	broad.mit.edu	36	8	124594675	124594675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058229	exon6	c.C595T	p.R199W	.	.	.
ANXA13	312	broad.mit.edu	36	8	124776957	124776957	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004306	exon6	c.G437T	p.G146V	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125145920	125145920	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon26	c.C3480T	p.V1160V	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125200350	125200350	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon40	c.C5374T	p.P1792S	.	.	.
RNF139	11236	broad.mit.edu	36	8	125568805	125568805	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007218	exon2	c.T1734G	p.I578M	.	.	.
ZNF572	137209	broad.mit.edu	36	8	126058750	126058750	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152412	exon3	c.G1059T	p.E353D	.	.	.
ZNF572	137209	broad.mit.edu	36	8	126058987	126058987	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152412	exon3	c.G1296A	p.R432R	.	.	.
LONRF1	91694	broad.mit.edu	36	8	12627663	12627663	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152271	exon11	c.C2107T	p.R703X	.	.	.
DLC1	10395	broad.mit.edu	36	8	13002306	13002306	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon9	c.C1911T	p.F637F	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130952814	130952814	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016623	exon7	c.G184A	p.E62K	.	.	.
ADCY8	114	broad.mit.edu	36	8	131985308	131985308	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115	exon7	c.C1803T	p.I601I	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133924187	133924187	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016018	exon19	c.A2633G	p.D878G	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401795	13401795	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.G157T	p.D53Y	.	.	.
TG	7038	broad.mit.edu	36	8	134049258	134049258	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon31	c.G5724A	p.E1908E	.	.	.
KHDRBS3	10656	broad.mit.edu	36	8	136638960	136638960	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006558	exon5	c.C559T	p.R187X	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139797157	139797157	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon30	c.G2467T	p.E823X	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139914558	139914558	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon5	c.T751G	p.L251V	.	.	.
PTK2	5747	broad.mit.edu	36	8	141781954	141781954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199649	exon25	c.C2264T	p.A755V	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142545843	142545843	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207414	exon19	c.T2325G	p.V775V	.	.	.
CYP11B2	1585	broad.mit.edu	36	8	143991860	143991860	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000498	exon6	c.C964A	p.P322T	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14456702	14456702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139167	exon2	c.C144T	p.C48C	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144804775	144804775	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014789	exon1	c.G1590A	p.G530G	.	.	.
CYC1	1537	broad.mit.edu	36	8	145223290	145223290	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001916	exon4	c.C516T	p.F172F	.	.	.
ARHGAP39	80728	broad.mit.edu	36	8	145741864	145741864	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025251	exon7	c.A2098G	p.K700E	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038105	146038105	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003416	exon5	c.G809T	p.R270I	.	.	.
ZNF16	7564	broad.mit.edu	36	8	146128664	146128664	+	Missense_Mutation	SNP	C	T	T	rs3735784	byCluster;byFrequency;byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006958	exon3	c.G313A	p.E105K	.	.	.
C8orf33	65265	broad.mit.edu	36	8	146249581	146249581	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023080	exon4	c.T498C	p.Y166Y	.	.	.
FGF20	26281	broad.mit.edu	36	8	16895153	16895153	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019851	exon3	c.G435T	p.E145D	.	.	.
ZDHHC2	51201	broad.mit.edu	36	8	17111886	17111886	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016353	exon9	c.C805T	p.R269X	.	.	.
MTMR7	9108	broad.mit.edu	36	8	17204137	17204137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004686	exon13	c.G1517A	p.R506H	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17555058	17555058	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon11	c.G3139T	p.D1047Y	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17599090	17599090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020749	exon1	c.G77A	p.R26Q	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656256	17656256	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon2	c.G1341A	p.A447A	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656949	17656949	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon2	c.G648A	p.T216T	.	.	.
FGL1	2267	broad.mit.edu	36	8	17770475	17770475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004467	exon7	c.C641T	p.S214F	.	.	.
PCM1	5108	broad.mit.edu	36	8	17840775	17840775	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon5	c.G589T	p.E197X	.	.	.
PCM1	5108	broad.mit.edu	36	8	17861814	17861814	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon14	c.A2052C	p.A684A	.	.	.
CSGALNACT1	55790	broad.mit.edu	36	8	19407272	19407272	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018371	exon4	c.C354T	p.A118A	.	.	.
GFRA2	2675	broad.mit.edu	36	8	21606836	21606836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165039	exon4	c.G587A	p.G196E	.	.	.
BMP1	649	broad.mit.edu	36	8	22110715	22110715	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006129	exon15	c.C1944T	p.F648F	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22192921	22192921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018068	exon2	c.G77A	p.G26D	.	.	.
SLC39A14	23516	broad.mit.edu	36	8	22331250	22331250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135153	exon8	c.C1289T	p.A430V	.	.	.
SORBS3	10174	broad.mit.edu	36	8	22477772	22477772	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005775	exon9	c.T707C	p.V236A	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23216783	23216783	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002318	exon11	c.C1953T	p.G651G	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23355087	23355087	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004901	exon8	c.C822T	p.G274G	.	.	.
STC1	6781	broad.mit.edu	36	8	23767907	23767907	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003155	exon1	c.C75T	p.D25D	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24246155	24246155	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021777	exon13	c.A1319G	p.K440R	.	.	.
ADAMDEC1	27299	broad.mit.edu	36	8	24317545	24317545	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145272	exon12	c.A1168G	p.T390A	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24414261	24414261	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon19	c.C2071T	p.R691C	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24414900	24414900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon20	c.G2129A	p.G710E	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24420912	24420912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon21	c.C2238T	p.I746I	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27377117	27377117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000742	exon6	c.G760A	p.D254N	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27969421	27969421	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon10	c.A1186C	p.I396L	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27978089	27978089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon7	c.C790T	p.R264C	.	.	.
FZD3	7976	broad.mit.edu	36	8	28440706	28440706	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145866	exon4	c.A510C	p.K170N	.	.	.
INTS9	55756	broad.mit.edu	36	8	28751211	28751211	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145159	exon4	c.C200T	p.T67M	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3007151	3007151	+	Silent	SNP	G	A	A	rs35444669	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon38	c.C5782T	p.R1928W	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3035041	3035041	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon34	c.T5199G	p.C1733W	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3059555	3059555	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon30	c.T4739G	p.L1580R	.	.	.
TEX15	56154	broad.mit.edu	36	8	30823716	30823716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.C2360T	p.P787L	.	.	.
WRN	7486	broad.mit.edu	36	8	31124529	31124529	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000553	exon30	c.A3567C	p.K1189N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3129257	3129257	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon26	c.C3970T	p.R1324X	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3193057	3193057	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon22	c.G3339T	p.R1113S	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3244383	3244383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon16	c.C2343A	p.F781L	.	.	.
FUT10	84750	broad.mit.edu	36	8	33366666	33366666	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032664	exon4	c.A569C	p.E190A	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35526472	35526472	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon2	c.G224C	p.C75S	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35660615	35660615	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon5	c.G579A	p.W193X	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35660707	35660707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon5	c.C671T	p.S224L	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35663698	35663698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon7	c.G1013T	p.R338I	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35767423	35767423	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon17	c.T2662G	p.L888V	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36761171	36761171	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon1	c.C85A	p.L29I	.	.	.
ADRB3	155	broad.mit.edu	36	8	37942815	37942815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000025	exon1	c.C330T	p.C110C	.	.	.
WHSC1L1	54904	broad.mit.edu	36	8	38281985	38281985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023034	exon13	c.G2378A	p.R793H	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38392719	38392719	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174065	exon13	c.C1674T	p.I558I	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38395044	38395044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174065	exon10	c.C1283T	p.S428F	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38405021	38405021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174066	exon3	c.C181T	p.P61S	.	.	.
IDO1	3620	broad.mit.edu	36	8	39899253	39899253	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002164	exon6	c.C463T	p.R155C	.	.	.
IDO1	3620	broad.mit.edu	36	8	39901432	39901432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002164	exon8	c.C691T	p.R231C	.	.	.
ANK1	286	broad.mit.edu	36	8	41664871	41664871	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020475	exon35	c.G4218A	p.K1406K	.	.	.
ANK1	286	broad.mit.edu	36	8	41696357	41696357	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020475	exon10	c.C1086A	p.A362A	.	.	.
PLAT	5327	broad.mit.edu	36	8	42157278	42157278	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033011	exon9	c.G834A	p.W278X	.	.	.
DKK4	27121	broad.mit.edu	36	8	42350809	42350809	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014420	exon4	c.G641A	p.R214Q	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42706196	42706196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000749	exon5	c.G589A	p.D197N	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43152394	43152394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152419	exon10	c.C872A	p.S291Y	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48748943	48748943	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080394	exon11	c.T1572G	p.C524W	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48924585	48924585	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon53	c.G7037A	p.R2346Q	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48957071	48957071	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon37	c.C4916T	p.S1639L	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48973584	48973584	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon29	c.C3463T	p.R1155X	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49009202	49009202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon15	c.G1499A	p.G500D	 PRKDC,skin,NS,Substitution - Missense,-1 	.	.
ST18	9705	broad.mit.edu	36	8	53211769	53211769	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014682	exon19	c.T2234C	p.V745A	.	.	.
ST18	9705	broad.mit.edu	36	8	53247682	53247682	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014682	exon10	c.A292C	p.K98Q	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54325900	54325900	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000912	exon2	c.T251C	p.I84T	.	.	.
RP1	6101	broad.mit.edu	36	8	55700213	55700213	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.G1218T	p.E406D	.	.	.
RP1	6101	broad.mit.edu	36	8	55700854	55700854	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.C1859A	p.S620Y	.	.	.
RP1	6101	broad.mit.edu	36	8	55705063	55705063	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.A6068C	p.K2023T	.	.	.
RP1	6101	broad.mit.edu	36	8	55705455	55705455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.G6460A	p.E2154K	.	.	.
XKR4	114786	broad.mit.edu	36	8	56598656	56598656	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052898	exon3	c.C1269A	p.F423L	.	.	.
LYN	4067	broad.mit.edu	36	8	57027207	57027207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002350	exon7	c.G616A	p.D206N	.	.	.
CA8	767	broad.mit.edu	36	8	61297790	61297790	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004056	exon7	c.G710A	p.R237Q	.	.	.
CHD7	55636	broad.mit.edu	36	8	61931143	61931143	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017780	exon33	c.A6992G	p.K2331R	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6283950	6283950	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon6	c.A505C	p.N169H	.	.	.
NKAIN3	286183	broad.mit.edu	36	8	63664833	63664833	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173688	exon3	c.G199C	p.V67L	.	.	.
YTHDF3	253943	broad.mit.edu	36	8	64250463	64250463	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152758	exon3	c.G69A	p.S23S	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67174788	67174788	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033105	exon6	c.G568T	p.E190X	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68212248	68212248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024790	exon15	c.C1816T	p.R606W	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68233807	68233807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024790	exon19	c.C2404T	p.R802W	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68279534	68279534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon35	c.G4894A	p.D1632N	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68374081	68374081	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon4	c.T376A	p.L126I	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69783830	69783830	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052958	exon9	c.T1289G	p.I430R	.	.	.
SULF1	23213	broad.mit.edu	36	8	70661256	70661256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128205	exon7	c.C523T	p.R175C	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71203296	71203296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006540	exon18	c.C3607T	p.R1203C	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71223192	71223192	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006540	exon12	c.G2475A	p.T825T	.	.	.
TRAM1	23471	broad.mit.edu	36	8	71658042	71658042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014294	exon10	c.G962A	p.R321Q	.	.	.
EYA1	2138	broad.mit.edu	36	8	72344605	72344605	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172060	exon9	c.T875C	p.F292S	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73127543	73127543	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon14	c.T1656C	p.L552L	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74012643	74012643	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004770	exon3	c.C2499T	p.C833C	.	.	.
RPL7	6129	broad.mit.edu	36	8	74367526	74367526	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000971	exon2	c.C75T	p.F25F	.	.	.
STAU2	27067	broad.mit.edu	36	8	74688736	74688736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164383	exon4	c.G172A	p.E58K	.	.	.
HNF4G	3174	broad.mit.edu	36	8	76626274	76626274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004133	exon4	c.G449A	p.R150Q	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77853196	77853196	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon4	c.C3291A	p.I1097I	.	.	.
IL7	3574	broad.mit.edu	36	8	79814829	79814829	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199887	exon3	c.T191G	p.F64C	.	.	.
IMPA1	3612	broad.mit.edu	36	8	82745783	82745783	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005536	exon7	c.C512A	p.T171N	.	.	.
PSKH2	85481	broad.mit.edu	36	8	87129939	87129939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033126	exon3	c.G1026A	p.Q342Q	.	.	.
SLC7A13	157724	broad.mit.edu	36	8	87311401	87311401	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138817	exon1	c.C222T	p.F74F	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88287468	88287468	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173538	exon5	c.T563C	p.L188S	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88366075	88366075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173538	exon7	c.G825A	p.S275S	.	.	.
PPP1R3B	79660	broad.mit.edu	36	8	9036377	9036377	+	Silent	SNP	G	A	A	rs17854302	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024607	exon2	c.C195T	p.F65F	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94816599	94816599	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.A1216C	p.N406H	.	.	.
TMEM67	91147	broad.mit.edu	36	8	94869250	94869250	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153704	exon14	c.T1415C	p.V472A	.	.	.
TMEM67	91147	broad.mit.edu	36	8	94878546	94878546	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153704	exon19	c.A1869C	p.Q623H	.	.	.
GEM	2669	broad.mit.edu	36	8	95331786	95331786	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181702	exon5	c.C819A	p.I273I	.	.	.
GEM	2669	broad.mit.edu	36	8	95333522	95333522	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181702	exon4	c.C514T	p.R172X	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95608300	95608300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015496	exon8	c.G1348A	p.A450T	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95612475	95612475	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015496	exon6	c.G499T	p.E167X	.	.	.
INTS8	55656	broad.mit.edu	36	8	95918021	95918021	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017864	exon7	c.G847T	p.E283X	.	.	.
INTS8	55656	broad.mit.edu	36	8	95933065	95933065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017864	exon13	c.G1616A	p.R539H	.	.	.
UQCRB	7381	broad.mit.edu	36	8	97313336	97313336	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006294	exon3	c.C100T	p.R34X	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97325445	97325445	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015942	exon7	c.C937T	p.Q313X	.	.	.
PGCP	10404	broad.mit.edu	36	8	98224458	98224458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016134	exon8	c.C1290A	p.F430L	.	.	.
MATN2	4147	broad.mit.edu	36	8	99012739	99012739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030583	exon3	c.C525A	p.D175E	.	.	.
ZMYND19	116225	broad.mit.edu	36	9	139601362	139601363	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138462	exon4	c.237_238insG	p.G79fs	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100031176	100031176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018421	exon5	c.G857A	p.R286H	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100190990	100190990	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005458	exon10	c.T1496G	p.F499C	.	.	.
INVS	27130	broad.mit.edu	36	9	102042313	102042313	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183245	exon6	c.C766T	p.R256X	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104805343	104805343	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001340	exon3	c.C157T	p.Q53X	.	.	.
OR13C8	138802	broad.mit.edu	36	9	106372161	106372161	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004483	exon1	c.C892A	p.L298M	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106420234	106420234	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001956	exon1	c.T73C	p.L25L	.	.	.
ABCA1	19	broad.mit.edu	36	9	106587568	106587568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon49	c.G6575A	p.S2192N	.	.	.
ABCA1	19	broad.mit.edu	36	9	106595347	106595347	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon41	c.C5562T	p.F1854F	.	.	.
ABCA1	19	broad.mit.edu	36	9	106639597	106639597	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon10	c.A1127G	p.K376R	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107158352	107158352	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080546	exon6	c.A539G	p.N180S	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107167701	107167701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080546	exon11	c.G1370A	p.R457Q	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107187601	107187601	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080546	exon15	c.G1947A	p.P649P	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108737612	108737612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon6	c.C6124T	p.R2042C	.	.	.
IKBKAP	8518	broad.mit.edu	36	9	110699106	110699106	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003640	exon24	c.G2535A	p.K845K	.	.	.
IKBKAP	8518	broad.mit.edu	36	9	110702425	110702425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003640	exon19	c.G2066A	p.R689Q	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111058502	111058502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018424	exon8	c.G832A	p.V278I	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111222634	111222634	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002829	exon14	c.G1204T	p.E402X	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113185322	113185322	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon36	c.C4327T	p.R1443X	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113232715	113232715	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon10	c.A1397C	p.N466T	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113329797	113329797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007169	exon2	c.C301A	p.L101M	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113558440	113558440	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173521	exon6	c.A656C	p.K219T	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115818862	115818862	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133374	exon10	c.A785G	p.H262R	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115850858	115850858	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133374	exon14	c.C1176T	p.S392S	.	.	.
AKNA	80709	broad.mit.edu	36	9	116152964	116152964	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030767	exon15	c.C3217T	p.R1073X	.	.	.
TNFSF15	9966	broad.mit.edu	36	9	116592878	116592878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005118	exon4	c.C431T	p.S144L	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118037355	118037355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002581	exon7	c.G2350A	p.E784K	.	.	.
TLR4	7099	broad.mit.edu	36	9	119514814	119514814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.G587A	p.R196Q	.	.	.
TLR4	7099	broad.mit.edu	36	9	119515481	119515481	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.C1254A	p.F418L	.	.	.
MEGF9	1955	broad.mit.edu	36	9	122424804	122424804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080497	exon3	c.G854A	p.R285Q	.	.	.
TRAF1	7185	broad.mit.edu	36	9	122725823	122725823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190945	exon4	c.G209A	p.R70H	.	.	.
PTGS1	5742	broad.mit.edu	36	9	124180062	124180062	+	Missense_Mutation	SNP	G	A	A	rs3842789	byCluster;byFrequency;byHapMap	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000962	exon3	c.G158A	p.R53H	.	.	.
OR1J4	26219	broad.mit.edu	36	9	124322148	124322148	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004452	exon1	c.G908T	p.R303I	.	.	.
OR1L1	26737	broad.mit.edu	36	9	124464448	124464448	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005236	exon1	c.T633G	p.F211L	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125385299	125385299	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024820	exon12	c.C837T	p.F279F	.	.	.
LHX2	9355	broad.mit.edu	36	9	125834786	125834786	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004789	exon5	c.G1200A	p.T400T	.	.	.
GOLGA1	2800	broad.mit.edu	36	9	126691609	126691609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002077	exon17	c.G1525A	p.E509K	.	.	.
SCAI	286205	broad.mit.edu	36	9	126755046	126755046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173690	exon19	c.G1751A	p.R584Q	.	.	.
RALGPS1	9649	broad.mit.edu	36	9	128871339	128871339	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014636	exon8	c.C493T	p.R165X	.	.	.
DNM1	1759	broad.mit.edu	36	9	130026398	130026398	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon10	c.A1244C	p.K415T	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130428615	130428615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon47	c.G6329A	p.R2110H	.	.	.
ZER1	10444	broad.mit.edu	36	9	130553547	130553547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006336	exon6	c.C1004T	p.S335F	.	.	.
NUP188	23511	broad.mit.edu	36	9	130803818	130803818	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015354	exon35	c.C4033T	p.R1345C	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13176340	13176340	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003829	exon17	c.C2410A	p.L804I	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13178956	13178956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003829	exon16	c.C2191T	p.R731C	.	.	.
FIBCD1	84929	broad.mit.edu	36	9	132769480	132769480	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145106	exon8	c.A1178G	p.D393G	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133357454	133357454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013318	exon29	c.G6459A	p.S2153S	.	.	.
SETX	23064	broad.mit.edu	36	9	134163452	134163452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon13	c.G5617A	p.E1873K	.	.	.
SETX	23064	broad.mit.edu	36	9	134196531	134196531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon8	c.G964A	p.A322T	.	.	.
TTF1	7270	broad.mit.edu	36	9	134244319	134244319	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007344	exon10	c.T2412C	p.F804F	.	.	.
TSC1	7248	broad.mit.edu	36	9	134762537	134762537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162426	exon22	c.G2827A	p.A943T	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136861667	136861667	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon64	c.G5092T	p.E1698X	.	.	.
FCN1	2219	broad.mit.edu	36	9	136941706	136941706	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002003	exon9	c.C740A	p.S247Y	.	.	.
FCN1	2219	broad.mit.edu	36	9	136946074	136946074	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002003	exon4	c.G285T	p.E95D	.	.	.
LCN9	392399	broad.mit.edu	36	9	137695883	137695883	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001676	exon2	c.A151G	p.K51E	.	.	.
KCNT1	57582	broad.mit.edu	36	9	137786791	137786791	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020822	exon6	c.T495G	p.A165A	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137882052	137882052	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015447	exon6	c.A885C	p.E295D	.	.	.
SNAPC4	6621	broad.mit.edu	36	9	138409969	138409969	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003086	exon3	c.A252C	p.E84D	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138467728	138467728	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon22	c.A6132C	p.E2044D	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138489339	138489339	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon3	c.G2550A	p.S850S	.	.	.
C9orf37	85026	broad.mit.edu	36	9	139630302	139630302	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032937	exon3	c.C171T	p.F57F	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140021085	140021085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000718	exon16	c.G2020A	p.E674K	.	.	.
NFIB	4781	broad.mit.edu	36	9	14140223	14140223	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190738	exon5	c.G805T	p.E269X	.	.	.
FREM1	158326	broad.mit.edu	36	9	14766044	14766044	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon26	c.G4600A	p.D1534N	.	.	.
PSIP1	11168	broad.mit.edu	36	9	15455536	15455536	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128217	exon16	c.T1575G	p.D525E	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15581451	15581451	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173550	exon5	c.G440T	p.R147I	.	.	.
BNC2	54796	broad.mit.edu	36	9	16409065	16409065	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017637	exon7	c.T3222G	p.F1074L	.	.	.
BNC2	54796	broad.mit.edu	36	9	16427090	16427090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017637	exon6	c.G1102A	p.E368K	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18625985	18625985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052866	exon6	c.C646T	p.R216C	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19048131	19048131	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017645	exon16	c.G2634A	p.T878T	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19048868	19048868	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017645	exon16	c.G1897T	p.E633X	.	.	.
DENND4C	55667	broad.mit.edu	36	9	19336106	19336106	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017925	exon18	c.G2484A	p.S828S	.	.	.
IFNE	338376	broad.mit.edu	36	9	21471404	21471404	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176891	exon1	c.C290A	p.S97Y	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2172150	2172150	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139045	exon30	c.C4315T	p.R1439C	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23694920	23694920	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171197	exon4	c.C483T	p.V161V	.	.	.
TEK	7010	broad.mit.edu	36	9	27218260	27218260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon22	c.C3257T	p.A1086V	.	.	.
RFX3	5991	broad.mit.edu	36	9	3253051	3253051	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134428	exon14	c.C1489T	p.R497X	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532101	32532101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.G2227A	p.E743K	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32533329	32533329	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.G999A	p.E333E	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32533744	32533744	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.G584A	p.R195Q	.	.	.
DOCK8	81704	broad.mit.edu	36	9	329015	329015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190458	exon12	c.C1228T	p.R410C	.	.	.
DCAF12	25853	broad.mit.edu	36	9	34088342	34088342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015397	exon5	c.G775A	p.A259T	.	.	.
CNTFR	1271	broad.mit.edu	36	9	34546288	34546288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147164	exon7	c.C733T	p.R245C	.	.	.
C9orf131	138724	broad.mit.edu	36	9	35035333	35035333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040411	exon2	c.C2488T	p.P830S	.	.	.
VCP	7415	broad.mit.edu	36	9	35052005	35052005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007126	exon9	c.G1076A	p.R359Q	.	.	.
PIGO	84720	broad.mit.edu	36	9	35081815	35081815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032634	exon7	c.G2069A	p.R690H	.	.	.
TPM2	7169	broad.mit.edu	36	9	35675107	35675107	+	Missense_Mutation	SNP	C	T	T	rs1059780	byFrequency	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213674	exon6	c.G593A	p.R198Q	.	.	.
TLN1	7094	broad.mit.edu	36	9	35689366	35689366	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006289	exon51	c.T6861C	p.A2287A	.	.	.
RGP1	9827	broad.mit.edu	36	9	35739852	35739852	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080496	exon2	c.G100A	p.A34T	.	.	.
C9orf128	392307	broad.mit.edu	36	9	35815363	35815363	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012446	exon3	c.A606C	p.T202T	.	.	.
ZCCHC7	84186	broad.mit.edu	36	9	37116348	37116348	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032226	exon2	c.G19A	p.E7K	.	.	.
POLR1E	64425	broad.mit.edu	36	9	37491715	37491715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022490	exon11	c.G974A	p.R325Q	.	.	.
CNTNAP3	79937	broad.mit.edu	36	9	39166055	39166055	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033655	exon7	c.C962T	p.S321L	.	.	.
GLIS3	169792	broad.mit.edu	36	9	3927084	3927084	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152629	exon4	c.A1351C	p.K451Q	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40763183	40763183	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033160	exon5	c.A2092C	p.N698H	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4534619	4534619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004170	exon2	c.G144A	p.E48E	.	.	.
JAK2	3717	broad.mit.edu	36	9	5045687	5045687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon8	c.G955A	p.D319N	.	.	.
JAK2	3717	broad.mit.edu	36	9	5062613	5062613	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon13	c.G1763T	p.R588I	.	.	.
CD274	29126	broad.mit.edu	36	9	5447399	5447399	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014143	exon3	c.C373T	p.R125X	.	.	.
KIAA1432	57589	broad.mit.edu	36	9	5762740	5762740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020829	exon23	c.C3556T	p.R1186W	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5820851	5820851	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024896	exon2	c.C516A	p.F172L	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5910513	5910513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon8	c.C5483A	p.S1828Y	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5910717	5910717	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon8	c.A5279G	p.N1760S	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5914739	5914739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon7	c.G2605T	p.D869Y	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5959252	5959252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon3	c.G979A	p.E327K	.	.	.
KDM4C	23081	broad.mit.edu	36	9	6804685	6804685	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146696	exon4	c.G441T	p.K147N	.	.	.
KANK1	23189	broad.mit.edu	36	9	702347	702347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153186	exon2	c.C1107T	p.V369V	.	.	.
PGM5	5239	broad.mit.edu	36	9	70284205	70284205	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021965	exon8	c.T1211C	p.L404P	.	.	.
KANK1	23189	broad.mit.edu	36	9	703322	703322	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153186	exon2	c.C2082T	p.F694F	.	.	.
APBA1	320	broad.mit.edu	36	9	71245843	71245843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163	exon11	c.G2190T	p.K730N	.	.	.
SMC5	23137	broad.mit.edu	36	9	72087282	72087282	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015110	exon7	c.A944G	p.N315S	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72403292	72403292	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon20	c.C2875T	p.R959C	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73534956	73534956	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013390	exon9	c.C1807A	p.H603N	.	.	.
TMC1	117531	broad.mit.edu	36	9	74593918	74593918	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138691	exon15	c.C1089A	p.F363L	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79126414	79126414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon43	c.G5645A	p.R1882Q	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79142057	79142057	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon46	c.G6045T	p.E2015D	.	.	.
CEP78	84131	broad.mit.edu	36	9	80056697	80056697	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098802	exon9	c.G1126T	p.E376X	.	.	.
CEP78	84131	broad.mit.edu	36	9	80069002	80069002	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098802	exon13	c.G1578T	p.E526D	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8474375	8474375	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon13	c.C1915A	p.L639I	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85490783	85490783	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053067	exon2	c.T288C	p.I96I	.	.	.
RMI1	80010	broad.mit.edu	36	9	85805794	85805794	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024945	exon3	c.A73G	p.M25V	.	.	.
RMI1	80010	broad.mit.edu	36	9	85806659	85806659	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024945	exon3	c.A938C	p.D313A	.	.	.
RMI1	80010	broad.mit.edu	36	9	85807146	85807146	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024945	exon3	c.G1425T	p.E475D	.	.	.
SLC28A3	64078	broad.mit.edu	36	9	86094896	86094896	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022127	exon12	c.C1142A	p.S381Y	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86475639	86475639	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018066	exon2	c.C156T	p.I52I	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8723794	8723794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon1	c.G50A	p.R17H	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89473405	89473405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon19	c.G1997A	p.R666Q	.	.	.
CDK20	23552	broad.mit.edu	36	9	89778764	89778764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170640	exon2	c.G82A	p.E28K	.	.	.
LOC286238	286238	broad.mit.edu	36	9	90456740	90456740	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100111	exon1	c.C23A	p.S8Y	.	.	.
SPTLC1	10558	broad.mit.edu	36	9	93861282	93861282	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006415	exon7	c.G690T	p.K230N	.	.	.
OGN	4969	broad.mit.edu	36	9	94192143	94192143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014057	exon5	c.C444T	p.L148L	.	.	.
FANCC	2176	broad.mit.edu	36	9	96903823	96903823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000136	exon15	c.G1664A	p.R555Q	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97683215	97683215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010895	exon2	c.G323A	p.R108Q	.	.	.
HSD17B3	3293	broad.mit.edu	36	9	98046446	98046446	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000197	exon9	c.G658T	p.E220X	.	.	.
CDC14B	8555	broad.mit.edu	36	9	98367535	98367535	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077181	exon2	c.T101C	p.V34A	.	.	.
C9orf21	195827	broad.mit.edu	36	9	98453544	98453544	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153698	exon4	c.G370T	p.E124X	.	.	.
ZNF510	22869	broad.mit.edu	36	9	98561158	98561158	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014930	exon6	c.G1775T	p.R592I	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99176695	99176695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020893	exon35	c.C4782T	p.L1594L	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109922054	109922055	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143982	exon2	c.12_13insA	p.K4fs	.	.	.
HMGN5	79366	broad.mit.edu	36	X	80257279	80257280	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030763	exon7	c.374_375insC	p.N125fs	.	.	.
DRP2	1821	broad.mit.edu	36	X	100377548	100377548	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001939	exon4	c.C161A	p.A54D	.	.	.
GLA	2717	broad.mit.edu	36	X	100540115	100540115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000169	exon6	c.C898T	p.L300F	.	.	.
GLA	2717	broad.mit.edu	36	X	100545510	100545510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000169	exon2	c.G314A	p.R105K	.	.	.
ARMCX1	51309	broad.mit.edu	36	X	100695684	100695684	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016608	exon4	c.A1115C	p.E372A	.	.	.
ARMCX3	51566	broad.mit.edu	36	X	100767099	100767099	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177948	exon5	c.T474C	p.I158I	.	.	.
ARMCX2	9823	broad.mit.edu	36	X	100798072	100798072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177949	exon6	c.G1159A	p.D387N	.	.	.
ZMAT1	84460	broad.mit.edu	36	X	101025841	101025841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011657	exon7	c.C1214T	p.A405V	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10136427	10136427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001830	exon9	c.G1186A	p.E396K	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101798243	101798243	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.G2746T	p.E916X	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101798916	101798916	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.C3419T	p.S1140L	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101799246	101799246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.A3749G	p.D1250G	.	.	.
BEX1	55859	broad.mit.edu	36	X	102204695	102204695	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018476	exon3	c.T164C	p.V55A	.	.	.
WBP5	51186	broad.mit.edu	36	X	102499555	102499555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006612	exon3	c.G287A	p.R96Q	.	.	.
TEX13A	56157	broad.mit.edu	36	X	104350838	104350838	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031274	exon3	c.G696A	p.G232G	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104885963	104885963	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017416	exon10	c.C1329A	p.L443L	.	.	.
NRK	203447	broad.mit.edu	36	X	105026168	105026168	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon7	c.A576C	p.K192N	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105336680	105336680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152423	exon5	c.C599T	p.S200L	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105742360	105742360	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018015	exon1	c.T394C	p.S132P	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105742482	105742482	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018015	exon1	c.G516A	p.A172A	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105769485	105769485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018015	exon9	c.G1646A	p.R549H	.	.	.
TBC1D8B	54885	broad.mit.edu	36	X	105995901	105995901	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017752	exon16	c.G2644T	p.E882X	.	.	.
TSC22D3	1831	broad.mit.edu	36	X	106845796	106845796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004089	exon2	c.G163A	p.E55K	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107289550	107289550	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon44	c.G4610A	p.R1537H	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107305661	107305661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon29	c.C2709T	p.F903F	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107309238	107309238	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon26	c.C2218T	p.P740S	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107317856	107317856	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon22	c.C1645A	p.L549I	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107756198	107756198	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon36	c.T3209G	p.I1070S	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107798345	107798345	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon41	c.G3745T	p.G1249X	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108528516	108528516	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001522	exon11	c.A2193T	p.G731G	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108583694	108583694	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001522	exon4	c.A1083C	p.Q361H	.	.	.
ACSL4	2182	broad.mit.edu	36	X	108813282	108813282	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022977	exon4	c.G90A	p.W30X	.	.	.
TMEM164	84187	broad.mit.edu	36	X	109303135	109303135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032227	exon7	c.G694A	p.E232K	.	.	.
DCX	1641	broad.mit.edu	36	X	110530959	110530959	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178153	exon3	c.T620G	p.F207C	.	.	.
ZCCHC16	340595	broad.mit.edu	36	X	111585339	111585339	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004308	exon3	c.G727T	p.A243S	.	.	.
LRCH2	57631	broad.mit.edu	36	X	114306704	114306704	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020871	exon8	c.G1154T	p.R385I	.	.	.
LRCH2	57631	broad.mit.edu	36	X	114320475	114320475	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020871	exon4	c.T717G	p.V239V	.	.	.
PLS3	5358	broad.mit.edu	36	X	114785675	114785675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005032	exon11	c.C1262T	p.A421V	.	.	.
SLC6A14	11254	broad.mit.edu	36	X	115504113	115504113	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007231	exon14	c.A1893C	p.E631D	.	.	.
KLHL13	90293	broad.mit.edu	36	X	116963465	116963465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168300	exon2	c.G182A	p.R61H	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118105297	118105297	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020721	exon11	c.A3924C	p.Q1308H	.	.	.
SLC25A43	203427	broad.mit.edu	36	X	118470905	118470905	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145305	exon5	c.G875T	p.R292I	.	.	.
SLC25A5	292	broad.mit.edu	36	X	118488913	118488913	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001152	exon4	c.C761T	p.T254M	.	.	.
UBE2A	7319	broad.mit.edu	36	X	118599523	118599523	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003336	exon4	c.C177A	p.F59L	.	.	.
SEPT6	23157	broad.mit.edu	36	X	118681613	118681613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145799	exon3	c.C201T	p.F67F	.	.	.
RPL39	6170	broad.mit.edu	36	X	118807945	118807945	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001000	exon2	c.C61T	p.R21C	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119550310	119550310	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079872	exon18	c.G2434T	p.E812X	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119562395	119562395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079872	exon6	c.G1052A	p.R351Q	.	.	.
THOC2	57187	broad.mit.edu	36	X	122600502	122600502	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081550	exon17	c.A1804C	p.K602Q	.	.	.
THOC2	57187	broad.mit.edu	36	X	122606339	122606339	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081550	exon14	c.A1531C	p.M511L	.	.	.
THOC2	57187	broad.mit.edu	36	X	122606883	122606883	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081550	exon13	c.G1411T	p.E471X	.	.	.
THOC2	57187	broad.mit.edu	36	X	122627284	122627284	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081550	exon12	c.G1276T	p.D426Y	.	.	.
STAG2	10735	broad.mit.edu	36	X	123019485	123019485	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042750	exon15	c.G1393T	p.V465F	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123414907	123414907	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon22	c.A4044G	p.T1348T	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123443413	123443413	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon21	c.G3778T	p.V1260F	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123855867	123855867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon3	c.C494T	p.P165L	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125126221	125126221	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013628	exon1	c.G1368A	p.G456G	.	.	.
DCAF12L1	139170	broad.mit.edu	36	X	125513918	125513918	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178470	exon1	c.A355G	p.T119A	.	.	.
ACTRT1	139741	broad.mit.edu	36	X	127013708	127013708	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138289	exon1	c.G159A	p.Q53Q	.	.	.
OCRL	4952	broad.mit.edu	36	X	128530954	128530954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001587	exon15	c.G1499A	p.R500Q	.	.	.
OCRL	4952	broad.mit.edu	36	X	128549921	128549921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001587	exon20	c.C2317T	p.P773S	.	.	.
XPNPEP2	7512	broad.mit.edu	36	X	128712209	128712209	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003399	exon8	c.C722T	p.A241V	.	.	.
XPNPEP2	7512	broad.mit.edu	36	X	128729322	128729322	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003399	exon20	c.C1803T	p.I601I	.	.	.
UTP14A	10813	broad.mit.edu	36	X	128872799	128872799	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006649	exon5	c.A373T	p.I125F	.	.	.
UTP14A	10813	broad.mit.edu	36	X	128887634	128887634	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006649	exon13	c.A1808T	p.D603V	.	.	.
AIFM1	9131	broad.mit.edu	36	X	129100277	129100277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145812	exon9	c.C927T	p.S309S	.	.	.
FAM9C	171484	broad.mit.edu	36	X	12968829	12968829	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174901	exon5	c.A298G	p.K100E	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130237381	130237381	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170962	exon15	c.C2909A	p.S970Y	.	.	.
USP26	83844	broad.mit.edu	36	X	131989188	131989188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031907	exon1	c.G727A	p.A243T	.	.	.
USP26	83844	broad.mit.edu	36	X	131989529	131989529	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031907	exon1	c.A386C	p.K129T	.	.	.
GPC4	2239	broad.mit.edu	36	X	132266520	132266520	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001448	exon7	c.G1191T	p.K397N	.	.	.
GPC4	2239	broad.mit.edu	36	X	132301029	132301029	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001448	exon2	c.A167G	p.H56R	.	.	.
GPC3	2719	broad.mit.edu	36	X	132715561	132715561	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164618	exon3	c.A598G	p.M200V	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133206962	133206962	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101357	exon2	c.G466T	p.E156X	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207025	133207025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101357	exon2	c.C529T	p.H177Y	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207280	133207280	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101357	exon2	c.G784T	p.E262X	.	.	.
MOSPD1	56180	broad.mit.edu	36	X	133858707	133858707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019556	exon4	c.G254A	p.R85Q	.	.	.
ZNF75D	7626	broad.mit.edu	36	X	134249435	134249435	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007131	exon6	c.T833A	p.L278Q	.	.	.
DDX26B	203522	broad.mit.edu	36	X	134538945	134538945	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182540	exon14	c.C1935T	p.G645G	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135156082	135156082	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173517	exon2	c.C155T	p.S52L	.	.	.
BRS3	680	broad.mit.edu	36	X	135400213	135400213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001727	exon2	c.C690T	p.L230L	.	.	.
CD40LG	959	broad.mit.edu	36	X	135558080	135558080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000074	exon1	c.G7A	p.E3K	.	.	.
CD40LG	959	broad.mit.edu	36	X	135566237	135566237	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000074	exon4	c.A403G	p.T135A	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135591751	135591751	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon14	c.G1522T	p.E508X	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135641942	135641942	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon6	c.G717T	p.K239N	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135653473	135653473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon5	c.G598A	p.G200S	.	.	.
TCEANC	170082	broad.mit.edu	36	X	13591205	13591205	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152634	exon4	c.A747C	p.K249N	.	.	.
F9	2158	broad.mit.edu	36	X	138471372	138471372	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000133	exon8	c.G862T	p.E288X	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138695081	138695081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010986	exon16	c.C1645T	p.R549C	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138724710	138724710	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010986	exon5	c.A428G	p.K143R	.	.	.
CXorf66	347487	broad.mit.edu	36	X	138866451	138866451	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013403	exon3	c.C356A	p.S119X	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822444	140822444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.C1588A	p.L530I	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140823111	140823111	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.C2255A	p.S752Y	.	.	.
MAGEA11	4110	broad.mit.edu	36	X	148576478	148576478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011544	exon5	c.C694T	p.P232S	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149364459	149364459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177466	exon1	c.C19T	p.R7W	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149389108	149389108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177466	exon2	c.C530T	p.T177M	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149389630	149389630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177466	exon2	c.C1052T	p.S351L	.	.	.
PASD1	139135	broad.mit.edu	36	X	150590761	150590761	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173493	exon13	c.C1291T	p.P431S	.	.	.
FATE1	89885	broad.mit.edu	36	X	150640559	150640559	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033085	exon3	c.T271G	p.S91A	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151569655	151569655	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018558	exon7	c.C857T	p.S286L	.	.	.
MAGEA6	4105	broad.mit.edu	36	X	151620859	151620859	+	Missense_Mutation	SNP	G	A	A	rs71213380	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005363	exon3	c.G893A	p.R298H	.	.	.
MAGEA12	4111	broad.mit.edu	36	X	151651099	151651099	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005367	exon2	c.C358A	p.L120M	.	.	.
NSDHL	50814	broad.mit.edu	36	X	151781840	151781840	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129765	exon6	c.C459T	p.V153V	.	.	.
ASB9	140462	broad.mit.edu	36	X	15178554	15178554	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168531	exon6	c.A487G	p.K163E	.	.	.
ZNF185	7739	broad.mit.edu	36	X	151839929	151839929	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007150	exon9	c.G634A	p.A212T	.	.	.
PNMA3	29944	broad.mit.edu	36	X	151976830	151976830	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013364	exon2	c.T762G	p.C254W	.	.	.
FAM58A	92002	broad.mit.edu	36	X	152514729	152514729	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130997	exon2	c.T221C	p.V74A	.	.	.
PNCK	139728	broad.mit.edu	36	X	152590266	152590266	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039582	exon6	c.A719C	p.D240A	.	.	.
BCAP31	10134	broad.mit.edu	36	X	152634301	152634301	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139457	exon4	c.G432A	p.T144T	.	.	.
IDH3G	3421	broad.mit.edu	36	X	152706725	152706725	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004135	exon6	c.C406T	p.R136C	.	.	.
AVPR2	554	broad.mit.edu	36	X	152824851	152824851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000054	exon2	c.C697A	p.H233N	.	.	.
OPN1LW	5956	broad.mit.edu	36	X	153071608	153071608	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020061	exon3	c.G411A	p.G137G	.	.	.
TKTL1	8277	broad.mit.edu	36	X	153192391	153192391	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145933	exon4	c.T343G	p.F115V	.	.	.
GAB3	139716	broad.mit.edu	36	X	153577435	153577435	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081573	exon8	c.T1481G	p.F494C	.	.	.
F8	2157	broad.mit.edu	36	X	153785776	153785776	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon17	c.A5804G	p.Y1935C	.	.	.
F8	2157	broad.mit.edu	36	X	153866200	153866200	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon6	c.C743A	p.P248H	.	.	.
F8	2157	broad.mit.edu	36	X	153878563	153878563	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon3	c.T267C	p.G89G	.	.	.
FUNDC2	65991	broad.mit.edu	36	X	153914885	153914885	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023934	exon2	c.A147C	p.G49G	.	.	.
ACE2	59272	broad.mit.edu	36	X	15499680	15499680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon14	c.G1825A	p.D609N	.	.	.
CTPS2	56474	broad.mit.edu	36	X	16626967	16626967	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144002	exon3	c.G337T	p.V113F	.	.	.
CTPS2	56474	broad.mit.edu	36	X	16630927	16630927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144002	exon2	c.C20T	p.T7M	.	.	.
REPS2	9185	broad.mit.edu	36	X	17075505	17075505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004726	exon18	c.C1963T	p.R655C	.	.	.
NHS	4810	broad.mit.edu	36	X	17615810	17615810	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon2	c.A62C	p.K21T	.	.	.
NHS	4810	broad.mit.edu	36	X	17659958	17659958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon9	c.C3878T	p.S1293L	.	.	.
BEND2	139105	broad.mit.edu	36	X	18099059	18099059	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153346	exon13	c.A2168C	p.K723T	.	.	.
BEND2	139105	broad.mit.edu	36	X	18123381	18123381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153346	exon7	c.C1136T	p.A379V	.	.	.
BEND2	139105	broad.mit.edu	36	X	18140618	18140618	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153346	exon4	c.C480T	p.F160F	.	.	.
SCML2	10389	broad.mit.edu	36	X	18186234	18186234	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006089	exon10	c.G1124A	p.R375K	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18532800	18532800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003159	exon12	c.C1835A	p.S612Y	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18871761	18871761	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000292	exon7	c.C705T	p.V235V	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19289596	19289596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001671	exon27	c.G3716A	p.R1239K	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19320400	19320400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001671	exon17	c.C2307T	p.I769I	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19341412	19341412	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001671	exon11	c.T1682C	p.V561A	.	.	.
SH3KBP1	30011	broad.mit.edu	36	X	19674408	19674408	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024666	exon2	c.A124C	p.S42R	.	.	.
SMS	6611	broad.mit.edu	36	X	21913200	21913200	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004595	exon9	c.C883A	p.L295I	.	.	.
ZNF645	158506	broad.mit.edu	36	X	22201128	22201128	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152577	exon1	c.T99C	p.I33I	.	.	.
DDX53	168400	broad.mit.edu	36	X	22929550	22929550	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182699	exon1	c.C1455T	p.S485S	.	.	.
PCYT1B	9468	broad.mit.edu	36	X	24518129	24518129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163264	exon4	c.C364T	p.R122C	.	.	.
POLA1	5422	broad.mit.edu	36	X	24654093	24654093	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon13	c.G1374A	p.S458S	.	.	.
POLA1	5422	broad.mit.edu	36	X	24676927	24676927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon26	c.C2843T	p.A948V	.	.	.
MAGEB18	286514	broad.mit.edu	36	X	26067395	26067395	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173699	exon2	c.G372A	p.T124T	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27907723	27907723	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017930	exon1	c.C1650A	p.F550L	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27907975	27907975	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017930	exon1	c.G1398A	p.E466E	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29327272	29327272	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014271	exon5	c.A629G	p.D210G	.	.	.
MAGEB2	4113	broad.mit.edu	36	X	30147369	30147369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002364	exon2	c.G751A	p.D251N	.	.	.
GK	2710	broad.mit.edu	36	X	30581640	30581640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128127	exon1	c.C65T	p.S22L	.	.	.
DMD	1756	broad.mit.edu	36	X	32317573	32317573	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004011	exon4	c.A461C	p.Q154P	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3245845	3245845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon6	c.C5877T	p.D1959D	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058076	34058076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.C2241T	p.G747G	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34060227	34060227	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.C90T	p.F30F	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34870959	34870959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152631	exon1	c.C90T	p.F30F	.	.	.
PRKX	5613	broad.mit.edu	36	X	3543927	3543927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005044	exon7	c.G880A	p.A294T	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35854134	35854134	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon2	c.A329G	p.D110G	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35879912	35879912	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon6	c.A957C	p.I319I	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35903845	35903845	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon15	c.T2607C	p.F869F	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35917415	35917415	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon16	c.T2772C	p.S924S	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35917531	35917531	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon16	c.A2888C	p.E963A	.	.	.
CXorf27	25763	broad.mit.edu	36	X	37735327	37735327	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012274	exon1	c.C291T	p.S97S	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37854544	37854544	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138780	exon13	c.A1461C	p.E487D	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37866347	37866347	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138780	exon15	c.C1776A	p.F592L	.	.	.
OTC	5009	broad.mit.edu	36	X	38125616	38125616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000531	exon4	c.G376A	p.D126N	.	.	.
USP9X	8239	broad.mit.edu	36	X	40912324	40912324	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon18	c.C2545T	p.R849X	.	.	.
USP9X	8239	broad.mit.edu	36	X	40958826	40958826	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon34	c.C5251A	p.L1751I	.	.	.
DDX3X	1654	broad.mit.edu	36	X	41089700	41089700	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001356	exon12	c.G1270T	p.E424X	.	.	.
CASK	8573	broad.mit.edu	36	X	41370823	41370823	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126054	exon10	c.C993A	p.F331L	.	.	.
CXorf36	79742	broad.mit.edu	36	X	44896092	44896092	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176819	exon5	c.A1051C	p.S351R	.	.	.
RP2	6102	broad.mit.edu	36	X	46597928	46597928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006915	exon2	c.G176A	p.G59E	.	.	.
USP11	8237	broad.mit.edu	36	X	46983756	46983756	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004651	exon3	c.G478A	p.A160T	.	.	.
SYN1	6853	broad.mit.edu	36	X	47349363	47349363	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133499	exon5	c.C732A	p.F244L	.	.	.
ZNF81	347344	broad.mit.edu	36	X	47660374	47660374	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007137	exon5	c.G1385T	p.R462I	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47721165	47721165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006962	exon7	c.G1265T	p.R422I	.	.	.
ZNF630	57232	broad.mit.edu	36	X	47803491	47803491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190255	exon5	c.G1242A	p.E414E	.	.	.
ZNF630	57232	broad.mit.edu	36	X	47803927	47803927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190255	exon5	c.G806A	p.R269K	.	.	.
SSX5	6758	broad.mit.edu	36	X	47932064	47932064	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175723	exon7	c.A514C	p.K172Q	.	.	.
GATA1	2623	broad.mit.edu	36	X	48537255	48537255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002049	exon6	c.G982A	p.E328K	.	.	.
KCND1	3750	broad.mit.edu	36	X	48710721	48710721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004979	exon1	c.G902A	p.R301H	.	.	.
WDR45	11152	broad.mit.edu	36	X	48819796	48819796	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029896	exon10	c.T916C	p.S306P	.	.	.
PLP2	5355	broad.mit.edu	36	X	48915351	48915351	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002668	exon1	c.G60A	p.S20S	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48958850	48958850	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon28	c.A3367C	p.I1123L	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48966469	48966469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon15	c.C1981A	p.L661I	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49025461	49025461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033215	exon3	c.G1134A	p.M378I	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49029807	49029807	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033215	exon4	c.G1711A	p.E571K	.	.	.
DGKK	139189	broad.mit.edu	36	X	50139769	50139769	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013742	exon19	c.G2704T	p.E902X	.	.	.
DGKK	139189	broad.mit.edu	36	X	50147344	50147344	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013742	exon14	c.C2066T	p.A689V	.	.	.
DGKK	139189	broad.mit.edu	36	X	50163288	50163288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013742	exon6	c.G1126A	p.D376N	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50393387	50393387	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020717	exon4	c.A2426G	p.Q809R	.	.	.
FAM120C	54954	broad.mit.edu	36	X	54116384	54116384	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017848	exon16	c.T3098C	p.V1033A	.	.	.
WNK3	65267	broad.mit.edu	36	X	54341547	54341547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002838	exon7	c.C1184T	p.S395F	.	.	.
GNL3L	54552	broad.mit.edu	36	X	54595070	54595070	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019067	exon12	c.G1119T	p.K373N	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	54976983	54976983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002625	exon13	c.C1352T	p.P451L	.	.	.
APEX2	27301	broad.mit.edu	36	X	55049681	55049681	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014481	exon6	c.C645T	p.C215C	.	.	.
APEX2	27301	broad.mit.edu	36	X	55049903	55049903	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014481	exon6	c.C867A	p.T289T	.	.	.
ALAS2	212	broad.mit.edu	36	X	55063570	55063570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037967	exon5	c.C620T	p.A207V	.	.	.
PAGE2	203569	broad.mit.edu	36	X	55134539	55134539	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207339	exon4	c.G243T	p.E81D	.	.	.
SPIN2B	474343	broad.mit.edu	36	X	57163091	57163091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006681	exon2	c.G697A	p.E233K	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821130	5821130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon6	c.G2179A	p.E727K	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821293	5821293	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon6	c.C2016T	p.S672S	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821554	5821554	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon6	c.G1755A	p.T585T	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	6079178	6079178	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon2	c.C330T	p.C110C	.	.	.
SPIN4	139886	broad.mit.edu	36	X	62486749	62486749	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012968	exon1	c.G675A	p.A225A	.	.	.
ARHGEF9	23229	broad.mit.edu	36	X	62792288	62792288	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173480	exon7	c.T805G	p.Y269D	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329366	63329366	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152424	exon2	c.A526G	p.I176V	.	.	.
ZC4H2	55906	broad.mit.edu	36	X	64056768	64056768	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178032	exon3	c.G247T	p.E83X	.	.	.
MSN	4478	broad.mit.edu	36	X	64871936	64871936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002444	exon8	c.G878A	p.R293H	.	.	.
EDA2R	60401	broad.mit.edu	36	X	65741652	65741652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199687	exon3	c.G229A	p.A77T	.	.	.
DLG3	1741	broad.mit.edu	36	X	69585521	69585521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021120	exon2	c.G391A	p.E131K	.	.	.
DLG3	1741	broad.mit.edu	36	X	69636556	69636556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021120	exon16	c.G2077A	p.E693K	.	.	.
IL2RG	3561	broad.mit.edu	36	X	70245936	70245936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000206	exon5	c.C624T	p.F208F	.	.	.
MED12	9968	broad.mit.edu	36	X	70262638	70262638	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon18	c.G2450A	p.R817H	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70387009	70387009	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171162	exon5	c.G1071A	p.K357K	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70388154	70388154	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171162	exon3	c.G690A	p.A230A	.	.	.
CXCR3	2833	broad.mit.edu	36	X	70753918	70753918	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001504	exon2	c.C129T	p.C43C	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71276025	71276025	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013627	exon6	c.C1902A	p.F634L	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71343828	71343828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017669	exon2	c.G1514A	p.R505Q	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71781048	71781048	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172436	exon14	c.G1348T	p.E450X	.	.	.
NAP1L2	4674	broad.mit.edu	36	X	72350641	72350641	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021963	exon1	c.G413T	p.R138I	.	.	.
CHIC1	53344	broad.mit.edu	36	X	72817532	72817532	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039840	exon6	c.C642A	p.F214L	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73879156	73879156	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008537	exon3	c.C1961A	p.S654X	.	.	.
ABCB7	22	broad.mit.edu	36	X	74190029	74190029	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004299	exon16	c.G2163T	p.W721C	.	.	.
ABCB7	22	broad.mit.edu	36	X	74196845	74196845	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004299	exon15	c.A1984C	p.I662L	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75567514	75567514	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020932	exon1	c.G2787A	p.W929X	.	.	.
MAGT1	84061	broad.mit.edu	36	X	77017685	77017685	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032121	exon2	c.G264T	p.M88I	.	.	.
PGK1	5230	broad.mit.edu	36	X	77265393	77265393	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000291	exon8	c.G802T	p.D268Y	.	.	.
LPAR4	2846	broad.mit.edu	36	X	77897059	77897059	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005296	exon2	c.G37T	p.D13Y	.	.	.
LPAR4	2846	broad.mit.edu	36	X	77897389	77897389	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005296	exon2	c.T367G	p.Y123D	.	.	.
P2RY10	27334	broad.mit.edu	36	X	78103583	78103583	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198333	exon2	c.C910A	p.L304I	.	.	.
TBX22	50945	broad.mit.edu	36	X	79167839	79167839	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109878	exon5	c.G540A	p.P180P	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79818871	79818871	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon41	c.T5302G	p.F1768V	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79818937	79818937	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon41	c.C5236T	p.R1746X	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79819185	79819185	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon41	c.G4988T	p.R1663I	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79819360	79819360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon41	c.G4813A	p.E1605K	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79829047	79829047	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon35	c.C3976T	p.R1326X	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79864911	79864911	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon17	c.A1682C	p.Y561S	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650077	82650077	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000307	exon1	c.C89A	p.P30H	.	.	.
SATL1	340562	broad.mit.edu	36	X	84249441	84249441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012980	exon1	c.G1190A	p.R397K	.	.	.
DACH2	117154	broad.mit.edu	36	X	85956424	85956424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053281	exon10	c.C1615T	p.R539C	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86777344	86777344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon9	c.C1838T	p.A613V	.	.	.
FAM9A	171482	broad.mit.edu	36	X	8726516	8726516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174951	exon4	c.G225T	p.K75N	.	.	.
TGIF2LX	90316	broad.mit.edu	36	X	89064367	89064367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138960	exon2	c.G627A	p.E209E	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	90977511	90977511	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon1	c.G352T	p.E118X	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019376	91019376	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.A1481G	p.D494G	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019525	91019525	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.G1630T	p.D544Y	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91020490	91020490	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.A2595G	p.I865M	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91020563	91020563	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.G2668T	p.E890X	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851177	92851177	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171110	exon5	c.A103C	p.N35H	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	95880248	95880248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006729	exon3	c.G173A	p.R58Q	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96054144	96054144	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006729	exon7	c.A669C	p.E223D	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99438505	99438505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon5	c.G2732A	p.R911Q	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549657	99549657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon1	c.G595A	p.E199K	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549711	99549711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon1	c.C541T	p.R181C	.	.	.
WWC3	55841	broad.mit.edu	36	X	9995413	9995413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015691	exon3	c.G103A	p.A35T	.	.	.
