Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MYH3	4621	broad.mit.edu	37	17	10542464	10542464	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr17:10542464G>T	uc002gmq.2	-	24	3233	c.3145C>A	c.(3145-3147)Ctg>Atg	p.L1049M		NM_002470	NP_002461	P11055	MYH3_HUMAN	Homo sapiens myosin, heavy chain 3, skeletal muscle, embryonic (MYH3), mRNA.	1049					muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	ATP binding|actin binding|calmodulin binding|microfilament motor activity			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(5)|large_intestine(18)|lung(30)|ovary(4)|pancreas(1)|prostate(4)|skin(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	83						TTCCTTTCCAGGTCTACTCGG	0.453000														49			19		5.3912e-06	5.50714e-06	1	1	0
BEND6	221336	broad.mit.edu	37	6	56882033	56882033	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr6:56882033G>A	uc010kab.3	+	4	1134	c.548G>A	c.(547-549)cGt>cAt	p.R183H	BEND6_uc003pdi.4_Missense_Mutation_p.R85H	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	Homo sapiens BEN domain containing 6 (BEND6), mRNA.	183	BEN.									endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(2)|lung(8)|ovary(1)|prostate(1)|skin(1)	17						CAGATTGCCCGTTGTAACAAG	0.363000														49			6		0	0	1	0	0
DDX12P	440081	broad.mit.edu	37	12	9580280	9580280	+	RNA	SNP	A	G	G	rs146037854	by1000genomes	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr12:9580280A>G	uc021qut.1	-	4		c.342T>C			DDX12P_uc001qvx.4_Non-coding_Transcript					Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene (DDX12P), non-coding RNA.																		AGTCGTTGATAGTCTTCAGCT	0.493000														48			4		0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42320573	42320573	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr8:42320573A>G	uc003xpe.3	-	3	835	c.466T>C	c.(466-468)Ttc>Ctc	p.F156L	SLC20A2_uc010lxl.3_Missense_Mutation_p.F156L|SLC20A2_uc010lxm.3_Missense_Mutation_p.F156L	NM_006749	NP_006740	Q08357	S20A2_HUMAN	Homo sapiens solute carrier family 20 (phosphate transporter), member 2 (SLC20A2), mRNA.	156					interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			breast(1)|endometrium(6)|large_intestine(5)|lung(9)|ovary(3)|prostate(1)|stomach(1)	26	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CCAGACATGAAACCAGACAAC	0.303000														81			23		0	0	1	0	0
MAPK7	5598	broad.mit.edu	37	17	19284792	19284792	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr17:19284792G>T	uc002gvn.3	+	3	1656	c.1270G>T	c.(1270-1272)Gct>Tct	p.A424S	MAPK7_uc002gvo.3_Missense_Mutation_p.A285S|MAPK7_uc002gvq.3_Missense_Mutation_p.A424S|MAPK7_uc002gvp.3_Missense_Mutation_p.A424S	NM_139033	NP_620601	Q13164	MK07_HUMAN	Homo sapiens mitogen-activated protein kinase 7 (MAPK7), transcript variant 1, mRNA.	424	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).|Pro-rich.				MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|cell cycle|cell differentiation|innate immune response|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			autonomic_ganglia(1)|central_nervous_system(4)|endometrium(5)|kidney(2)|large_intestine(4)|lung(9)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	30	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					CAGTCCCTGGGCTCCCAGTGG	0.632000														46			11		9.70103e-10	1.00174e-09	1	1	0
GANC	2595	broad.mit.edu	37	15	42631976	42631976	+	Silent	SNP	G	A	A	rs35039186	byFrequency	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:42631976G>A	uc001zpi.3	+	16	2267	c.1953G>A	c.(1951-1953)aaG>aaA	p.K651K		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	Homo sapiens glucosidase, alpha; neutral C (GANC), mRNA.	651					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity	p.K651K(2)		breast(1)|central_nervous_system(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(10)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	23		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		TGAACACCAAGCGACGAGAGC	0.572000														46			4		0	0	1	0	0
BRF1	2972	broad.mit.edu	37	14	105678483	105678483	+	Silent	SNP	A	G	G			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr14:105678483A>G	uc001yqp.2	-	15	2154	c.1791T>C	c.(1789-1791)tcT>tcC	p.S597S	BRF1_uc010tyo.1_Silent_p.S482S|BRF1_uc010typ.1_Silent_p.S504S|BRF1_uc001yqk.2_Silent_p.S123S|BRF1_uc001yql.2_Silent_p.S393S|BRF1_uc001yqo.2_Silent_p.S359S|BRF1_uc010axg.1_Silent_p.S570S|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_Silent_p.S123S	NM_001519	NP_663718	Q92994	TF3B_HUMAN	Homo sapiens BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) (BRF1), transcript variant 1, mRNA.	597					positive regulation of transcription, DNA-dependent|rRNA transcription|tRNA transcription|transcription initiation from RNA polymerase III promoter	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			NS(1)|central_nervous_system(1)|endometrium(5)|large_intestine(4)|lung(5)|ovary(3)|prostate(1)|skin(2)|urinary_tract(2)	24		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		CTGGCTGCGTAGACACCAGAG	0.627000														19			9		0	0	1	0	0
GNAQ	2776	broad.mit.edu	37	9	80537210	80537210	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:80537210T>C	uc004akw.3	-	1	256	c.188A>G	c.(187-189)cAt>cGt	p.H63R		NM_002072	NP_002063	P50148	GNAQ_HUMAN	Homo sapiens guanine nucleotide binding protein (G protein), q polypeptide (GNAQ), mRNA.	63					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|glutamate signaling pathway|negative regulation of protein kinase activity|platelet activation|protein ADP-ribosylation|protein stabilization|regulation of action potential|regulation of catenin import into nucleus	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activator activity|GTPase activity|signal transducer activity			NS(1)|endometrium(3)|eye(229)|kidney(1)|large_intestine(4)|lung(6)|meninges(11)|ovary(1)|prostate(1)|skin(44)|upper_aerodigestive_tract(1)	302						TCCTGACCCATGGATGATTCT	0.483000			Mis		uveal melanoma									91			27		0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54803979	54803979	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:54803979A>C	uc021smr.1	+	21	5402	c.5402A>C	c.(5401-5403)cAa>cCa	p.Q1801P	UNC13C_uc021sms.1_Missense_Mutation_p.Q1803P	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	Homo sapiens unc-13 homolog C (C. elegans) (UNC13C), mRNA.	1803					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			breast(3)|endometrium(5)|kidney(5)|large_intestine(20)|lung(70)|ovary(6)|pancreas(2)|prostate(2)|upper_aerodigestive_tract(4)|urinary_tract(4)	121				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AATATTCAACAATTGCGGGTC	0.308000														28			5		0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	80164222	80164222	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr14:80164222C>A	uc001xun.3	+	14	3238	c.2747C>A	c.(2746-2748)aCc>aAc	p.T916N	NRXN3_uc001xum.1_Non-coding_Transcript|NRXN3_uc001xup.2_Non-coding_Transcript|NRXN3_uc001xuq.2_Missense_Mutation_p.T284N|NRXN3_uc010asw.3_Missense_Mutation_p.T314N|NRXN3_uc001xur.4_Missense_Mutation_p.T284N	NM_004796	NP_004787	Q9HDB5	NRX3B_HUMAN	Homo sapiens neurexin 3 (NRXN3), transcript variant 1, mRNA.	284					angiogenesis|cell adhesion	integral to membrane				NS(1)|breast(4)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(23)|lung(40)|ovary(3)|pancreas(2)|prostate(5)|skin(7)|upper_aerodigestive_tract(9)|urinary_tract(1)	104		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GTCATGGAAACCACTACTACA	0.448000														58			37		2.6416e-12	2.81969e-12	1	1	0
PRR14	78994	broad.mit.edu	37	16	30663152	30663152	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:30663152T>C	uc002dyy.3	+	2	317	c.59T>C	c.(58-60)cTg>cCg	p.L20P	PRR14_uc002dyz.3_5'UTR|PRR14_uc002dza.3_Missense_Mutation_p.L20P|PRR14_uc002dzb.1_5'Flank	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	Homo sapiens proline rich 14 (PRR14), mRNA.	20										breast(3)|endometrium(5)|kidney(1)|large_intestine(3)|lung(5)|skin(1)	18			Colorectal(24;0.103)			CGCCAGCCTCTGACTCGAGCA	0.687000														81			27		0	0	1	0	0
CCR3	1232	broad.mit.edu	37	3	46307516	46307516	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:46307516C>T	uc003cpl.2	+	2	1997	c.966C>T	c.(964-966)atC>atT	p.I322I	CCR3_uc003cpg.2_Silent_p.I289I|CCR3_uc003cpk.2_Silent_p.I310I|CCR3_uc003cpi.2_Silent_p.I289I|CCR3_uc010hjb.2_Silent_p.I307I|CCR3_uc003cpj.2_Silent_p.I289I|CCR3_uc021wwz.1_Silent_p.I289I	NM_178329	NP_847899	P51677	CCR3_HUMAN	Homo sapiens chemokine (C-C motif) receptor 3 (CCR3), transcript variant 2, mRNA.	289					G-protein signaling, coupled to cAMP nucleotide second messenger|cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				breast(1)|endometrium(1)|kidney(1)|large_intestine(6)|lung(5)|ovary(3)|urinary_tract(1)	18				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CAGAGGTGATCGCCTACTCCC	0.522000														57			22		0	0	1	0	0
DDX12P	440081	broad.mit.edu	37	12	9580293	9580293	+	RNA	SNP	A	G	G	rs139954536	by1000genomes	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr12:9580293A>G	uc021qut.1	-	4		c.329T>C			DDX12P_uc001qvx.4_Non-coding_Transcript					Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene (DDX12P), non-coding RNA.									p.M473T(1)									CTTCAGCTCCATCCCTGAGAA	0.502000														45			4		0	0	1	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626759	43626759	+	Missense_Mutation	SNP	G	A	A	rs145894188	by1000genomes	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:43626759G>A	uc011lrb.2	-	3	1957	c.1928C>T	c.(1927-1929)aCg>aTg	p.T643M		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	Homo sapiens family with sequence similarity 75, member A6 (FAM75A6), mRNA.	643						integral to membrane		p.T643M(2)		breast(2)|endometrium(3)|kidney(4)|lung(36)|prostate(4)|skin(2)|soft_tissue(1)|stomach(1)|urinary_tract(1)	54						ACCTGTGGACGTGGAGGACTG	0.572000														5			8		0	0	1	0	0
PREPL	9581	broad.mit.edu	37	2	44549983	44549983	+	Nonsense_Mutation	SNP	G	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr2:44549983G>C	uc002ruf.3	-	11	2866	c.1907C>G	c.(1906-1908)tCa>tGa	p.S636*	PREPL_uc002rug.3_Nonsense_Mutation_p.S570*|PREPL_uc002ruh.3_Nonsense_Mutation_p.S574*|PREPL_uc010fax.3_Nonsense_Mutation_p.S636*|PREPL_uc002rui.4_Nonsense_Mutation_p.S547*|PREPL_uc002ruj.2_Nonsense_Mutation_p.S547*|PREPL_uc002ruk.2_Nonsense_Mutation_p.S636*	NM_006036	NP_006027	Q4J6C6	PPCEL_HUMAN	Homo sapiens prolyl endopeptidase-like (PREPL), transcript variant 1, mRNA.	636					proteolysis	cytosol	serine-type endopeptidase activity			breast(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(19)|ovary(1)|prostate(1)|skin(2)	33		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TATGTGAATTGAAGGATAATG	0.373000														82			64		0	0	1	0	0
DDX12P	440081	broad.mit.edu	37	12	9581791	9581791	+	RNA	SNP	T	C	C	rs4763566	by1000genomes	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr12:9581791T>C	uc021qut.1	-	2		c.217A>G			DDX12P_uc001qvx.4_Non-coding_Transcript					Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene (DDX12P), non-coding RNA.																		ATCAGGTTCTTGGCCTTCAAA	0.612000														21			3		0	0	1	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13910714	13910714	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:13910714G>A	uc002mxh.1	+	1	523	c.334G>A	c.(334-336)Gtg>Atg	p.V112M		NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	Homo sapiens zinc finger, SWIM-type containing 4 (ZSWIM4), mRNA.	112							zinc ion binding			central_nervous_system(3)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(11)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	27			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			GAGCGGGGCCGTGGACCGCGT	0.652000														43			13		0	0	1	0	0
DCDC2	51473	broad.mit.edu	37	6	24291186	24291186	+	Silent	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr6:24291186G>A	uc003ndx.3	-	4	980	c.678C>T	c.(676-678)gaC>gaT	p.D226D	DCDC2_uc003ndy.3_Silent_p.D226D	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	Homo sapiens doublecortin domain containing 2 (DCDC2), transcript variant 1, mRNA.	226					cellular defense response|intracellular signal transduction|neuron migration					breast(1)|endometrium(2)|kidney(3)|large_intestine(8)|lung(12)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	32		Ovarian(999;0.101)				TCGTTGACTTGTCAAAAAGTA	0.428000														58			27		0	0	1	0	0
DAAM2	23500	broad.mit.edu	37	6	39835373	39835373	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr6:39835373C>T	uc003oow.3	+	5	655	c.516C>T	c.(514-516)cgC>cgT	p.R172R	DAAM2_uc010jxc.3_Silent_p.R172R|DAAM2_uc003oox.3_Silent_p.R172R	NM_001201427	NP_001188356	Q86T65	DAAM2_HUMAN	Homo sapiens dishevelled associated activator of morphogenesis 2 (DAAM2), transcript variant 1, mRNA.	172	GBD/FH3.				actin cytoskeleton organization		Rho GTPase binding|actin binding			NS(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|large_intestine(9)|lung(18)|ovary(2)|prostate(4)|skin(2)|upper_aerodigestive_tract(5)	49	Ovarian(28;0.0355)|Colorectal(47;0.196)					GTGAGAGCCGCATCCACACCT	0.552000														161			18		0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53056854	53056854	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:53056854A>G	uc010epq.1	+	4	862	c.685A>G	c.(685-687)Aaa>Gaa	p.K229E	ZNF808_uc002pzq.2_Non-coding_Transcript|ZNF808_uc010epr.2_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	Homo sapiens zinc finger protein 808 (ZNF808), mRNA.	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(8)|kidney(3)|lung(12)|urinary_tract(1)	24				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CATGAGAGAAAAATCTTTCCC	0.368000														110			168		0	0	1	0	0
OR1D4	653166	broad.mit.edu	37	17	3144312	3144312	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr17:3144312C>A	uc002fvf.3	+	0	343	c.343C>A	c.(343-345)Ctg>Atg	p.L115M						Homo sapiens olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene) (OR1D4), non-coding RNA.																		CAACCTCATCCTGGCCGTGAT	0.567000														53			19		7.92952e-12	8.37005e-12	1	1	0
USP20	10868	broad.mit.edu	37	9	132637641	132637641	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:132637641G>A	uc004bys.2	+	19	2312	c.2101G>A	c.(2101-2103)Gcc>Acc	p.A701T	USP20_uc004byr.2_Missense_Mutation_p.A701T|USP20_uc004byt.1_Missense_Mutation_p.A701T	NM_001110303	NP_006667	Q9Y2K6	UBP20_HUMAN	Homo sapiens ubiquitin specific peptidase 20 (USP20), transcript variant 3, mRNA.	701	DUSP 1.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	G-protein-coupled receptor binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity|zinc ion binding			breast(1)|endometrium(2)|large_intestine(3)|lung(4)|urinary_tract(1)	11		Ovarian(14;0.00556)				GTCCCTGGCCGCCATGCGGGA	0.662000														15			19		0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090379	9090379	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:9090379G>T	uc002mkp.3	-	0	1640	c.1436C>A	c.(1435-1437)cCa>cAa	p.P479Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	Homo sapiens mucin 16, cell surface associated (MUC16), mRNA.	479	Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						CTCTCTTGTTGGGTGGGATGA	0.552000														153			36		6.84511e-11	7.146e-11	1	1	0
KIT	3815	broad.mit.edu	37	4	55594221	55594221	+	Missense_Mutation	SNP	A	G	G	rs121913512		TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr4:55594221A>G	uc010igr.3	+	12	2011	c.1924A>G	c.(1924-1926)Aaa>Gaa	p.K642E	KIT_uc010igs.3_Missense_Mutation_p.K638E|KIT_uc010igt.2_Missense_Mutation_p.K91E	NM_000222	NP_000213	P10721	KIT_HUMAN	Homo sapiens v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (KIT), transcript variant 1, mRNA.	642	Protein kinase.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.K642E(100)|p.K642Q(2)		NS(8)|autonomic_ganglia(1)|bone(21)|breast(2)|central_nervous_system(4)|endometrium(10)|eye(12)|genital_tract(18)|haematopoietic_and_lymphoid_tissue(1820)|kidney(17)|large_intestine(17)|lung(27)|ovary(23)|pancreas(4)|prostate(1)|salivary_gland(15)|skin(228)|soft_tissue(4117)|stomach(3)|testis(55)|thymus(7)|upper_aerodigestive_tract(1)	6411	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GTCTGAACTCAAAGTCCTGAG	0.438000		1	"""Mis, O"""		"""GIST, AML, TGCT, mastocytosis, mucosal melanoma"""	"""GIST, epithelioma"""	Piebald trait		Piebaldism;Mast Cell disease, Familial Clustering of;Gastrointestinal Stromal Tumors, Sporadic Multiple Primary;Familial Gastrointestinal Stromal Tumors					5			158		0	0	1	0	0
NPEPL1	79716	broad.mit.edu	37	20	57288496	57288496	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr20:57288496C>T	uc010zzs.1	+	8	1117	c.1022C>T	c.(1021-1023)aCg>aTg	p.T341M	NPEPL1_uc010zzr.2_Missense_Mutation_p.T293M|NPEPL1_uc010gjo.2_Missense_Mutation_p.T313M|NPEPL1_uc002xzp.3_3'UTR	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	Homo sapiens aminopeptidase-like 1 (NPEPL1), transcript variant 1, mRNA.	341					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(7)|prostate(1)	14	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			ATCAACAACACGGATGCCGAG	0.622000														7			4		0	0	1	0	0
LIPG	9388	broad.mit.edu	37	18	47095863	47095863	+	Silent	SNP	G	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr18:47095863G>C	uc002ldv.3	+	3	768	c.516G>C	c.(514-516)gcG>gcC	p.A172A	LIPG_uc002ldu.1_Silent_p.A172A|LIPG_uc010xdh.2_Silent_p.A172A	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	Homo sapiens lipase, endothelial (LIPG), mRNA.	172					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			autonomic_ganglia(1)|breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(6)|ovary(1)|prostate(2)|skin(2)	18						GCCTCGGAGCGCACGTGGCCG	0.542000														23			5		0	0	1	0	0
SYTL3	94120	broad.mit.edu	37	6	159181747	159181747	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr6:159181747C>T	uc003qrp.3	+	15	1783	c.1384C>T	c.(1384-1386)Cgg>Tgg	p.R462W	SYTL3_uc003qrr.3_Missense_Mutation_p.R462W|SYTL3_uc003qro.3_Missense_Mutation_p.R394W|SYTL3_uc003qrs.3_Missense_Mutation_p.R394W|SYTL3_uc011efq.2_Missense_Mutation_p.R188W	NM_001242384	NP_001229313	Q4VX76	SYTL3_HUMAN	Homo sapiens synaptotagmin-like 3 (SYTL3), transcript variant 1, mRNA.	462					intracellular protein transport	endomembrane system|membrane	Rab GTPase binding			endometrium(2)|kidney(3)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|urinary_tract(1)	20		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		TCTCCCTTCACGGCCCAGAAA	0.562000														24			22		0	0	1	0	0
SLC7A1	6541	broad.mit.edu	37	13	30097603	30097603	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr13:30097603C>T	uc001uso.3	-	6	1236	c.849G>A	c.(847-849)caG>caA	p.Q283Q		NM_003045	NP_003036	P30825	CTR1_HUMAN	Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 (SLC7A1), mRNA.	283					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity			endometrium(2)|kidney(2)|large_intestine(6)|lung(10)|prostate(1)|stomach(1)|urinary_tract(2)	24		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GGATGGCCTTCTGTGGGTTCT	0.592000														19			15		0	0	1	0	0
DNAJC17	55192	broad.mit.edu	37	15	41060197	41060197	+	Missense_Mutation	SNP	C	T	T	rs142251536	byFrequency	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:41060197C>T	uc001zms.2	-	10	888	c.856G>A	c.(856-858)Gag>Aag	p.E286K	C15orf62_uc010bby.3_5'Flank	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 17 (DNAJC17), mRNA.	286					protein folding		RNA binding|heat shock protein binding|nucleotide binding|unfolded protein binding			endometrium(1)|kidney(1)|large_intestine(2)|pancreas(1)|skin(1)	6		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		TGTTGCCGCTCGGCCGCCTGG	0.652000														19			17		0	0	1	0	0
ADAT3	113179	broad.mit.edu	37	19	1912852	1912852	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:1912852C>T	uc002luh.3	+	1	1030	c.758C>T	c.(757-759)cCg>cTg	p.P253L	SCAMP4_uc002lui.1_Intron|SCAMP4_uc002luj.3_Intron|SCAMP4_uc002luk.3_Intron|SCAMP4_uc010dss.3_Intron|ADAT3_uc021umn.1_Missense_Mutation_p.P253L	NM_138422	NP_612431	Q96EY9	ADAT3_HUMAN	Homo sapiens adenosine deaminase, tRNA-specific 3 (ADAT3), mRNA.	253					tRNA processing		hydrolase activity|zinc ion binding			breast(1)|kidney(3)|pancreas(1)|skin(2)	7		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTCGCCCCGGCCGCTGCC	0.721000														12			9		0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729163	66729163	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:66729163C>T	uc010bhq.3	+	2	846	c.371C>T	c.(370-372)cCg>cTg	p.P124L	MAP2K1_uc010ujp.2_Missense_Mutation_p.P102L	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	Homo sapiens mitogen-activated protein kinase kinase 1 (MAP2K1), mRNA.	124	Protein kinase.				MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Ras protein signal transduction|Toll signaling pathway|activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.P124S(4)		endometrium(2)|kidney(1)|large_intestine(1)|lung(6)|prostate(1)|skin(8)|urinary_tract(1)	20						TGCAACTCTCCGTACATCGTG	0.512000														60			40		0	0	1	0	0
RBM34	23029	broad.mit.edu	37	1	235301434	235301434	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:235301434C>T	uc001hwn.3	-	6	988	c.757G>A	c.(757-759)Gag>Aag	p.E253K	RBM34_uc001hwo.3_Non-coding_Transcript|RBM34_uc001hwp.3_Non-coding_Transcript	NM_015014	NP_055829	P42696	RBM34_HUMAN	Homo sapiens RNA binding motif protein 34 (RBM34), transcript variant 1, mRNA.	253	RRM 1.					nucleolus	RNA binding|nucleotide binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			GCAGCACTCTCCTCCTTAAAC	0.318000														60			7		0	0	1	0	0
KIAA1328	57536	broad.mit.edu	37	18	34802054	34802054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr18:34802054C>T	uc002kzz.3	+	9	1620	c.1598C>T	c.(1597-1599)tCc>tTc	p.S533F	KIAA1328_uc002lab.3_3'UTR|KIAA1328_uc002lac.1_Missense_Mutation_p.S392F	NM_020776	NP_065827	Q86T90	K1328_HUMAN	Homo sapiens KIAA1328 (KIAA1328), mRNA.	533										central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(5)|skin(2)|upper_aerodigestive_tract(1)	14				COAD - Colon adenocarcinoma(74;0.195)		CGCTATCCCTCCAGAGAAGCT	0.502000														11			11		0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131859615	131859615	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr7:131859615C>T	uc003vra.4	-	20	4168	c.3939G>A	c.(3937-3939)ccG>ccA	p.P1313P		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	Homo sapiens plexin A4 (PLXNA4), transcript variant 1, mRNA.	1313						integral to membrane|intracellular|plasma membrane				NS(1)|breast(1)|endometrium(3)|kidney(4)|large_intestine(14)|lung(17)|ovary(1)|prostate(2)|skin(1)|stomach(1)	45						AGTCCAGGAACGGAATCCCGG	0.572000														186			23		0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56204417	56204417	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr18:56204417G>A	uc002lhj.4	-	4	3216	c.3002C>T	c.(3001-3003)gCg>gTg	p.A1001V	ALPK2_uc002lhk.1_Missense_Mutation_p.A332V	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	Homo sapiens alpha-kinase 2 (ALPK2), mRNA.	1001							ATP binding|protein serine/threonine kinase activity	p.E1000K(1)		NS(1)|central_nervous_system(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(33)|ovary(7)|prostate(1)|skin(10)|upper_aerodigestive_tract(2)	84						CTCCCTGGTCGCTTGAAAGCA	0.488000														77			8		0	0	1	0	0
CHD9	80205	broad.mit.edu	37	16	53243524	53243524	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:53243524G>A	uc002ehb.3	+	1	1747	c.1583G>A	c.(1582-1584)cGt>cAt	p.R528H	CHD9_uc002egy.3_Missense_Mutation_p.R528H|CHD9_uc002egz.1_Missense_Mutation_p.R528H|CHD9_uc002ehc.3_Missense_Mutation_p.R528H|CHD9_uc002ehd.2_Missense_Mutation_p.R54H	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.	528					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(5)|kidney(6)|large_intestine(21)|lung(32)|ovary(2)|prostate(2)|skin(2)|stomach(1)|urinary_tract(1)	78		all_cancers(37;0.0212)				AAGGCTAATCGTATAATATCA	0.438000														51			42		0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54385775	54385775	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:54385775C>T	uc002qcq.1	+	0	309	c.27C>T	c.(25-27)ggC>ggT	p.G9G	PRKCG_uc010eqz.1_Silent_p.G9G|PRKCG_uc010yef.1_Silent_p.G9G|PRKCG_uc010yeg.1_Silent_p.G9G|PRKCG_uc010yeh.1_5'Flank	NM_002739	NP_002730	P05129	KPCG_HUMAN	Homo sapiens protein kinase C, gamma (PRKCG), mRNA.	9					activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			large_intestine(1)|lung(4)|ovary(2)|pancreas(2)|skin(1)	10	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCGGCGTAGGCGATTCAGAGG	0.627000														130			61		0	0	1	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004671	102004671	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chrX:102004671G>T	uc022cbi.1	+	0	748	c.748G>T	c.(748-750)Gcc>Tcc	p.A250S	BHLHB9_uc010nog.3_Missense_Mutation_p.A250S|BHLHB9_uc011mrq.2_Missense_Mutation_p.A250S|BHLHB9_uc011mrr.2_Missense_Mutation_p.A250S|BHLHB9_uc011mrs.2_Missense_Mutation_p.A250S|BHLHB9_uc011mrt.2_Missense_Mutation_p.A250S|BHLHB9_uc004ejo.3_Missense_Mutation_p.A250S|BHLHB9_uc011mru.2_Missense_Mutation_p.A250S|BHLHB9_uc011mrv.2_Missense_Mutation_p.A250S	NM_030639	NP_085142	Q6PI77	BHLH9_HUMAN	Homo sapiens basic helix-loop-helix domain containing, class B, 9 (BHLHB9), transcript variant 2, mRNA.	250						cytoplasm|nucleus	binding			cervix(1)|endometrium(6)|kidney(3)|large_intestine(1)|lung(8)|ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	26						TATTGTTCTGGCCTCCGCTGA	0.522000														7			60		4.6707e-30	5.47798e-30	1	1	0
ZNF282	8427	broad.mit.edu	37	7	148921667	148921667	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr7:148921667C>T	uc003wfm.3	+	7	2049	c.1944C>T	c.(1942-1944)caC>caT	p.H648H	ZNF282_uc011kun.1_3'UTR|ZNF282_uc003wfo.3_3'UTR	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	Homo sapiens zinc finger protein 282 (ZNF282), mRNA.	648					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|large_intestine(3)|lung(7)|prostate(2)|skin(1)|urinary_tract(1)	17	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		TCAAGGACCACCTGCGCGTGC	0.726000														26			6		0	0	1	0	0
B2M	567	broad.mit.edu	37	15	45003745	45003745	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:45003745A>T	uc001zuc.3	+	0	61	c.1A>T	c.(1-3)Atg>Ttg	p.M1L	B2M_uc010uek.1_Missense_Mutation_p.M1L|B2M_uc010bdx.1_Missense_Mutation_p.M1L	NM_004048	NP_004039	P61769	B2MG_HUMAN	Homo sapiens beta-2-microglobulin (B2M), mRNA.	1					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	Golgi membrane|MHC class I protein complex|early endosome membrane	protein binding	p.M1L(6)|p.M1V(4)|p.M1R(3)|p.M1T(2)|p.M1K(2)|p.?(1)|p.M1I(1)		breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(30)|kidney(8)|large_intestine(6)|lung(6)|ovary(2)|skin(2)|urinary_tract(1)	59		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		TCGGGCCGAGATGTCTCGCTC	0.612000														34			38		0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2760808	2760808	+	Silent	SNP	C	T	T	rs150092451	by1000genomes	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr12:2760808C>T	uc009zdu.1	+	33	4405	c.4092C>T	c.(4090-4092)aaC>aaT	p.N1364N	CACNA1C_uc001qkc.2_Silent_p.N1316N|CACNA1C_uc001qjz.2_Silent_p.N1316N|CACNA1C_uc001qkd.2_Silent_p.N1316N|CACNA1C_uc001qke.2_Silent_p.N1305N|CACNA1C_uc001qkf.2_Silent_p.N1305N|CACNA1C_uc009zdw.1_Silent_p.N1338N|CACNA1C_uc001qkg.2_Silent_p.N1303N|CACNA1C_uc001qkh.2_Silent_p.N1305N|CACNA1C_uc001qkl.2_Silent_p.N1364N|CACNA1C_uc001qkj.2_Silent_p.N1316N|CACNA1C_uc001qkk.2_Silent_p.N1316N|CACNA1C_uc001qkn.2_Silent_p.N1316N|CACNA1C_uc001qkm.2_Silent_p.N1305N|CACNA1C_uc001qko.2_Silent_p.N1336N|CACNA1C_uc001qkp.2_Silent_p.N1316N|CACNA1C_uc001qkq.2_Silent_p.N1344N|CACNA1C_uc001qku.2_Silent_p.N1316N|CACNA1C_uc001qkr.2_Silent_p.N1333N|CACNA1C_uc001qks.2_Silent_p.N1316N|CACNA1C_uc001qkt.2_Silent_p.N1316N|CACNA1C_uc009zdv.1_Silent_p.N1313N|CACNA1C_uc001qkb.2_Silent_p.N1316N|CACNA1C_uc001qki.1_Silent_p.N1052N|CACNA1C_uc010sea.1_Silent_p.N7N	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	Homo sapiens calcium channel, voltage-dependent, L type, alpha 1C subunit (CACNA1C), transcript variant 1, mRNA.	1364					axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity	p.N851N(1)|p.N1394N(1)		NS(3)|breast(4)|central_nervous_system(4)|cervix(2)|endometrium(12)|kidney(9)|large_intestine(20)|lung(55)|ovary(10)|pancreas(1)|prostate(5)|skin(3)|upper_aerodigestive_tract(4)	132			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGTTCCAGAACGCAGAGGAAA	0.617000														68			12		0	0	1	0	0
ME1	4199	broad.mit.edu	37	6	83926315	83926315	+	Splice_Site	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr6:83926315C>T	uc003pjy.3	-	13	1715	c.1450_splice	c.e13-1	p.V484_splice	ME1_uc011dzb.2_Splice_Site_p.V409_splice|ME1_uc011dzc.2_Splice_Site_p.V318_splice	NM_002395	NP_002386	P48163	MAOX_HUMAN	Homo sapiens malic enzyme 1, NADP(+)-dependent, cytosolic (ME1), mRNA.	484					NADP biosynthetic process|carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|NAD binding|NADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding			NS(2)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(7)|ovary(2)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	36		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TGAGCTATAACCTTATGAAAA	0.358000														20			21		0	0	1	0	0
LOC641298	641298	broad.mit.edu	37	16	22480375	22480375	+	RNA	SNP	T	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:22480375T>C	uc010bxf.3	+	9		c.1541T>C								Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC641298), non-coding RNA.																		GGGGAATCAGTGGATGAAGAC	0.453000														15			8		0	0	1	0	0
UBAP2	55833	broad.mit.edu	37	9	33944587	33944587	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:33944587G>A	uc003ztq.1	-	13	1434	c.1321C>T	c.(1321-1323)Cga>Tga	p.R441*	UBAP2_uc011loc.1_Nonsense_Mutation_p.R350*|UBAP2_uc011lod.1_Nonsense_Mutation_p.R174*|UBAP2_uc011loe.1_Nonsense_Mutation_p.R196*|UBAP2_uc011lof.1_Nonsense_Mutation_p.R366*|UBAP2_uc011log.1_Nonsense_Mutation_p.R387*|UBAP2_uc003ztr.2_Nonsense_Mutation_p.R313*|UBAP2_uc003zts.3_Nonsense_Mutation_p.R74*	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	Homo sapiens ubiquitin associated protein 2 (UBAP2), mRNA.	441										endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|lung(13)|ovary(3)|stomach(1)	32			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		TGCTGTTGTCGCTGGCTCAAC	0.483000														1			24		0	0	1	0	0
CELF5	60680	broad.mit.edu	37	19	3281229	3281229	+	Silent	SNP	C	T	T	rs139670443	byFrequency	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:3281229C>T	uc002lxm.3	+	5	673	c.636C>T	c.(634-636)gcC>gcT	p.A212A	CELF5_uc010dtj.2_Silent_p.A212A|CELF5_uc002lxl.2_Silent_p.A212A|CELF5_uc010xhg.2_Non-coding_Transcript|CELF5_uc002lxn.3_Non-coding_Transcript	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	Homo sapiens CUGBP, Elav-like family member 5 (CELF5), transcript variant 1, mRNA.	212	RRM 2.				mRNA processing	cytoplasm|nucleus	RNA binding|nucleotide binding			kidney(1)|large_intestine(2)|lung(7)|ovary(2)|skin(1)	13						TCAAGTTCGCCGACACGGACA	0.677000														98			18		0	0	1	0	0
VPS4A	27183	broad.mit.edu	37	16	69354045	69354045	+	Splice_Site	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:69354045C>A	uc002eww.3	+	7	749	c.621_splice	c.e7-1	p.K207_splice		NM_013245	NP_037377	Q9UN37	VPS4A_HUMAN	Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae) (VPS4A), mRNA.	207					cell cycle|cellular membrane organization|cytokinesis|endosome transport|protein transport	cytosol|late endosome membrane|midbody|perinuclear region of cytoplasm	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein domain specific binding			NS(1)|central_nervous_system(1)|large_intestine(2)|lung(3)	7		Ovarian(137;0.101)				CCTTCACAGGCTGGTCAAGAA	0.592000														12			6		8.12818e-05	8.12818e-05	1	1	0
DDI1	414301	broad.mit.edu	37	11	103908451	103908451	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr11:103908451C>T	uc001phr.2	+	0	1144	c.901C>T	c.(901-903)Cgt>Tgt	p.R301C	PDGFD_uc001php.3_Intron|PDGFD_uc001phq.3_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	Homo sapiens DNA-damage inducible 1 homolog 1 (S. cerevisiae) (DDI1), mRNA.	301					proteolysis		aspartic-type endopeptidase activity			central_nervous_system(1)|endometrium(4)|kidney(4)|large_intestine(12)|liver(2)|lung(21)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	52		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		AATTATTGGCCGTGTTCATCT	0.483000														88			59		0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10452485	10452485	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:10452485C>T	uc003bvt.3	-	2	653	c.214G>A	c.(214-216)Gct>Act	p.A72T	ATP2B2_uc003bvv.3_Missense_Mutation_p.A72T|ATP2B2_uc003bvw.3_Missense_Mutation_p.A72T|ATP2B2_uc010hdp.2_Missense_Mutation_p.A72T|ATP2B2_uc010hdo.3_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	Homo sapiens ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2), transcript variant 1, mRNA.	72					ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|PDZ domain binding|calcium ion binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein C-terminus binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(7)|large_intestine(19)|lung(29)|ovary(5)|prostate(2)|skin(4)|stomach(2)|urinary_tract(2)	74						AGGTCTGGAGCGGTGCCCGGC	0.532000														96			120		0	0	1	0	0
TCTEX1D1	200132	broad.mit.edu	37	1	67220356	67220356	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:67220356C>T	uc001dcv.3	+	1	146	c.15C>T	c.(13-15)gaC>gaT	p.D5D	TCTEX1D1_uc009wau.3_Non-coding_Transcript|TCTEX1D1_uc009wav.3_Non-coding_Transcript	NM_152665	NP_689878	Q8N7M0	TC1D1_HUMAN	Homo sapiens Tctex1 domain containing 1 (TCTEX1D1), mRNA.	5								p.S4*(1)		large_intestine(2)|lung(10)|skin(1)	13						TGATGTCAGACAATGCTAAAG	0.363000														33			24		0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17122306	17122306	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:17122306C>T	uc002nfb.3	-	4	627	c.595G>A	c.(595-597)Gtc>Atc	p.V199I		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	Homo sapiens C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (CPAMD8), mRNA.	152						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			breast(11)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(17)|lung(14)|ovary(7)|pancreas(2)|prostate(4)|skin(5)	82						TTTGGAGAGACGGTGAAGATG	0.587000														61			80		0	0	1	0	0
PRR23A	729627	broad.mit.edu	37	3	138724873	138724873	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:138724873G>C	uc011bms.2	-	0	238	c.238C>G	c.(238-240)Ctg>Gtg	p.L80V		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	Homo sapiens proline rich 23A (PRR23A), mRNA.	80								p.L80L(1)		endometrium(3)|kidney(1)|lung(7)	11						GGGAGCTCCAGCACCAGGTCG	0.677000														6			10		0	0	1	0	0
SASS6	163786	broad.mit.edu	37	1	100568566	100568566	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:100568566G>T	uc001dsu.3	-	13	1760	c.1619C>A	c.(1618-1620)aCc>aAc	p.T540N	SASS6_uc009wdz.3_Missense_Mutation_p.T373N	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	Homo sapiens spindle assembly 6 homolog (C. elegans) (SASS6), mRNA.	540					centriole replication	centriole				breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(2)|lung(6)|ovary(1)|upper_aerodigestive_tract(2)	19		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		ATGAGGGAAGGTATTCTGGAA	0.388000														38			25		1.17739e-12	1.27105e-12	1	1	0
GPRIN3	285513	broad.mit.edu	37	4	90170046	90170046	+	Missense_Mutation	SNP	G	A	A	rs35246727	byFrequency	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr4:90170046G>A	uc003hsm.1	-	1	1735	c.1216C>T	c.(1216-1218)Cgg>Tgg	p.R406W	GPRIN3_uc021xqb.1_Missense_Mutation_p.R406W	NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	Homo sapiens GPRIN family member 3 (GPRIN3), mRNA.	406										breast(2)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(6)|lung(15)|ovary(5)|prostate(2)|skin(1)	36		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		TTATTTTCCCGTTGGAAAGCT	0.532000														119			45		0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58568105	58568105	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:58568105C>T	uc002env.3	-	39	6134	c.5841G>A	c.(5839-5841)gtG>gtA	p.V1947V	CNOT1_uc002enw.3_Non-coding_Transcript|CNOT1_uc002enu.4_Silent_p.V1942V|CNOT1_uc002ent.3_5'Flank|CNOT1_uc010vik.2_Silent_p.V904V	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA.	1947					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				breast(1)|central_nervous_system(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(4)|kidney(7)|large_intestine(24)|lung(25)|ovary(4)|prostate(6)|skin(3)|upper_aerodigestive_tract(2)	87				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CTGAGTGTTTCACGAGCAGTG	0.502000														20			32		0	0	1	0	0
RANBP6	26953	broad.mit.edu	37	9	6013624	6013624	+	Missense_Mutation	SNP	C	T	T	rs61758806	byFrequency	TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:6013624C>T	uc003zjr.3	-	0	2017	c.1984G>A	c.(1984-1986)Gat>Aat	p.D662N	RANBP6_uc011lmf.2_Missense_Mutation_p.D310N|RANBP6_uc003zjs.3_3'UTR	NM_012416	NP_036548	O60518	RNBP6_HUMAN	Homo sapiens RAN binding protein 6 (RANBP6), transcript variant 1, mRNA.	662					protein transport	cytoplasm|nucleus	binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(8)|kidney(5)|large_intestine(8)|lung(9)|ovary(7)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	51		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		CAGCCATCATCGTCACTCATA	0.413000														70			5		0	0	1	0	0
ZNF862	643641	broad.mit.edu	37	7	149545315	149545315	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr7:149545315C>A	uc010lpn.3	+	3	925	c.733C>A	c.(733-735)Cca>Aca	p.P245T		NM_001099220	NP_001092690	O60290	ZN862_HUMAN	Homo sapiens zinc finger protein 862 (ZNF862), mRNA.	245					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(10)|ovary(1)|prostate(1)|skin(1)	34						ATTCTACCCCCCAGGGCCTCT	0.587000														11			26		9.39395e-14	1.02578e-13	1	1	0
DMTF1	9988	broad.mit.edu	37	7	86803974	86803974	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr7:86803974C>T	uc003uih.3	+	6	834	c.508C>T	c.(508-510)Cgc>Tgc	p.R170C	DMTF1_uc003uii.3_5'UTR|DMTF1_uc003uij.3_5'UTR|DMTF1_uc011khb.2_Missense_Mutation_p.R82C|DMTF1_uc003uik.3_Non-coding_Transcript|DMTF1_uc003uil.3_Missense_Mutation_p.R170C|DMTF1_uc003uim.1_Missense_Mutation_p.R170C|DMTF1_uc003uin.3_5'UTR	NM_001142327	NP_001135798	Q9Y222	DMTF1_HUMAN	Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), transcript variant 2, mRNA.	170	Interaction with CCND2 (By similarity).|Required for DNA-binding (By similarity).|Required for transcriptional activation (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(4)|ovary(1)	16	Esophageal squamous(14;0.0058)					CAATATTGAACGCTATCTTAA	0.303000														90			32		0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631137	32631137	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr9:32631137G>A	uc003zrg.1	-	0	4531	c.4441C>T	c.(4441-4443)Cca>Tca	p.P1481S	AX747113_uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	Homo sapiens TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like (TAF1L), mRNA.	1481	Bromo 1.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|TBP-class protein binding|histone acetyltransferase activity|protein serine/threonine kinase activity			breast(6)|central_nervous_system(4)|endometrium(14)|kidney(11)|large_intestine(32)|liver(2)|lung(68)|ovary(2)|pancreas(2)|prostate(7)|skin(9)|stomach(1)|upper_aerodigestive_tract(1)	159			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GAATGTTTTGGCCCATTGTAG	0.418000														43			59		0	0	1	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14439185	14439185	+	RNA	SNP	C	A	A	rs112098339		TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr21:14439185C>A	uc002yja.4	+	9		c.2703C>A								Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA.																		TGACTTTAAACCAAGAAGAAG	0.269000														33			9		3.86212e-05	3.90321e-05	1	1	0
ZBBX	79740	broad.mit.edu	37	3	167039974	167039974	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:167039974G>T	uc011bpc.2	-	11	1251	c.914C>A	c.(913-915)cCa>cAa	p.P305Q	ZBBX_uc003feq.3_Missense_Mutation_p.P276Q|ZBBX_uc003fep.3_Missense_Mutation_p.P305Q	NM_001199201	NP_001186130	A8MT70	ZBBX_HUMAN	Homo sapiens zinc finger, B-box domain containing (ZBBX), transcript variant 1, mRNA.	305						intracellular	zinc ion binding			NS(1)|breast(1)|endometrium(5)|kidney(5)|large_intestine(9)|liver(1)|lung(38)|ovary(2)|prostate(1)|skin(4)|stomach(2)|upper_aerodigestive_tract(1)	70						AATATTAAGTGGTTCTCTCCA	0.279000														53			40		9.62906e-15	1.06367e-14	1	1	0
TAB1	10454	broad.mit.edu	37	22	39777745	39777745	+	Silent	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr22:39777745C>T	uc003axq.4	+	3	590	c.528C>T	c.(526-528)gcC>gcT	p.A176A	TAB1_uc003axr.3_Intron	NM_004711	NP_004702	Q15750	TAB1_HUMAN	Homo sapiens synaptogyrin 1 (SYNGR1), transcript variant 1a, mRNA.	223	PP2C-like.				I-kappaB kinase/NF-kappaB cascade|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|activation of MAPK activity|activation of MAPKKK activity|innate immune response|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)|endometrium(2)|large_intestine(2)|lung(8)|urinary_tract(1)	14						AGATTGGCGCCGACTCGGCCC	0.682000														41			35		0	0	1	0	0
CES3	23491	broad.mit.edu	37	16	67000765	67000765	+	Silent	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:67000765C>A	uc002eqt.3	+	7	1138	c.1059C>A	c.(1057-1059)ccC>ccA	p.P353P	CES3_uc010cdz.3_Silent_p.P353P|CES3_uc010viw.2_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	Homo sapiens carboxylesterase 3 (CES3), transcript variant 1, mRNA.	353						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(4)|lung(6)|ovary(3)|skin(1)	24		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GGCTCATCCCCAGGGTGAGTT	0.592000														76			58		3.76997e-23	4.36765e-23	1	1	0
JAKMIP3	282973	broad.mit.edu	37	10	133948572	133948572	+	Silent	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr10:133948572C>A	uc001lkx.4	+	3	877	c.877C>A	c.(877-879)Cgg>Agg	p.R293R		NM_001105521	NP_001098991			Homo sapiens Janus kinase and microtubule interacting protein 3 (JAKMIP3), mRNA.											breast(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(7)|lung(10)|ovary(2)|prostate(1)|upper_aerodigestive_tract(2)	31		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AAAAGATGCCCGGCGCTTCCA	0.502000														3			38		1.04594e-18	1.16899e-18	1	1	0
SEC11C	90701	broad.mit.edu	37	18	56819782	56819782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr18:56819782C>T	uc002lht.3	+	2	268	c.212C>T	c.(211-213)cCg>cTg	p.P71L	SEC11C_uc010dpo.1_Missense_Mutation_p.P71L|SEC11C_uc010xej.1_Missense_Mutation_p.P71L	NM_033280	NP_150596	Q9BY50	SC11C_HUMAN	Homo sapiens SEC11 homolog C (S. cerevisiae) (SEC11C), mRNA.	71					energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	serine-type peptidase activity			endometrium(1)|large_intestine(4)|liver(2)|lung(2)	9		Colorectal(73;0.175)				AGTATGGAGCCGGCCTTTCAC	0.453000														164			77		0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104062046	104062046	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr4:104062046A>T	uc003hxb.1	-	35	5769	c.5679T>A	c.(5677-5679)aaT>aaA	p.N1893K	CENPE_uc003hxc.1_Missense_Mutation_p.N1868K|CENPE_uc003hxd.1_5'Flank	NM_001813	NP_001804	Q02224	CENPE_HUMAN	Homo sapiens centromere protein E, 312kDa (CENPE), mRNA.	1893					blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			NS(3)|breast(6)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(8)|large_intestine(20)|lung(34)|ovary(5)|pancreas(1)|prostate(2)|skin(3)|stomach(5)|urinary_tract(3)	101				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CTCTTCTTAGATTATCTCTTT	0.363000														3			73		0	0	1	0	0
TAF5	6877	broad.mit.edu	37	10	105147056	105147056	+	Silent	SNP	C	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr10:105147056C>A	uc001kwv.3	+	8	1977	c.1954C>A	c.(1954-1956)Cgg>Agg	p.R652R	TAF5_uc010qqq.2_Silent_p.R597R	NM_006951	NP_008882	Q15542	TAF5_HUMAN	Homo sapiens TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa (TAF5), mRNA.	652					histone acetylation|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|transcription factor TFIID complex|transcription factor TFTC complex	protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			breast(1)|central_nervous_system(1)|kidney(2)|large_intestine(5)|lung(4)|ovary(2)	15		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;1.83e-09)|all cancers(201;1.4e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		CAGAACTGTGCGGCTCTGGGA	0.433000														3			58		3.89483e-19	4.40486e-19	1	1	0
PLA2G5	5322	broad.mit.edu	37	1	20412607	20412607	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:20412607C>G	uc001bcx.3	+	7	1028	c.165C>G	c.(163-165)gaC>gaG	p.D55E	PLA2G5_uc001bcy.3_Missense_Mutation_p.D24E	NM_000929	NP_000920	P39877	PA2G5_HUMAN	Homo sapiens phospholipase A2, group V (PLA2G5), mRNA.	24					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity			NS(1)|large_intestine(1)|lung(8)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	14		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		GCTTGCTGGACCTAAAATCAA	0.602000														26			21		0	0	1	0	0
C16orf5	29965	broad.mit.edu	37	16	4564112	4564112	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr16:4564112G>A	uc002cwu.3	-	1	315	c.20C>T	c.(19-21)cCt>cTt	p.P7L	C16orf5_uc002cwv.3_Missense_Mutation_p.P7L|C16orf5_uc002cww.3_Missense_Mutation_p.P7L|C16orf5_uc010uxl.2_Missense_Mutation_p.P7L|C16orf5_uc010uxm.2_Missense_Mutation_p.P7L|C16orf5_uc010btu.3_Intron	NM_013399	NP_037531	Q9H305	LITFL_HUMAN	Homo sapiens chromosome 16 open reading frame 5 (C16orf5), transcript variant 2, mRNA.	7	Pro-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|apoptosis|tumor necrosis factor-mediated signaling pathway	nucleus				NS(1)|endometrium(1)|lung(2)|ovary(1)	5		Ovarian(90;0.17)				AGGATAAGGAGGGGGAGGCTC	0.597000														14			3		0	0	1	0	0
SULF2	55959	broad.mit.edu	37	20	46313216	46313216	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr20:46313216G>A	uc002xto.3	-	5	1177	c.847C>T	c.(847-849)Cgc>Tgc	p.R283C	SULF2_uc002xtr.3_Missense_Mutation_p.R283C|SULF2_uc002xtq.3_Missense_Mutation_p.R283C	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	Homo sapiens sulfatase 2 (SULF2), transcript variant 1, mRNA.	283					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	Golgi stack|cell surface|endoplasmic reticulum|extracellular space	arylsulfatase activity|calcium ion binding			breast(2)|endometrium(4)|kidney(1)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|prostate(5)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	54						GTCTGCAAGCGCTTCCGCTGG	0.627000														15			16		0	0	1	0	0
IQSEC1	9922	broad.mit.edu	37	3	12978085	12978085	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:12978085C>T	uc003bxt.2	-	2	482	c.473G>A	c.(472-474)cGc>cAc	p.R158H	IQSEC1_uc003bxu.3_Missense_Mutation_p.R36H|IQSEC1_uc011auw.1_Missense_Mutation_p.R144H	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	Homo sapiens IQ motif and Sec7 domain 1 (IQSEC1), transcript variant 2, mRNA.	158	IQ.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity	p.R158C(2)		breast(2)|endometrium(5)|kidney(1)|large_intestine(5)|lung(6)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						CATGGAGCTGCGCAAGCGCTC	0.582000														14			6		0	0	1	0	0
USP13	8975	broad.mit.edu	37	3	179472600	179472600	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr3:179472600C>G	uc003fkh.3	+	14	1960	c.1879C>G	c.(1879-1881)Cca>Gca	p.P627A		NM_003940	NP_003931	Q92995	UBP13_HUMAN	Homo sapiens ubiquitin specific peptidase 13 (isopeptidase T-3) (USP13), mRNA.	627					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(20)|ovary(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(3)	46	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			GGAAGAACTTCCAGACATCAG	0.483000														81			56		0	0	1	0	0
GPA33	10223	broad.mit.edu	37	1	167042719	167042719	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:167042719G>A	uc001gea.1	-	1	445	c.101C>T	c.(100-102)tCg>tTg	p.S34L		NM_005814	NP_005805	Q99795	GPA33_HUMAN	Homo sapiens glycoprotein A33 (transmembrane) (GPA33), mRNA.	34	Ig-like V-type.					integral to plasma membrane	receptor activity			endometrium(4)|large_intestine(1)|lung(6)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	15						CTTTCCCTGCGAAGCCCGAAG	0.542000														56			21		0	0	1	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715411	68715411	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr5:68715411G>T	uc003jwq.3	+	1	273	c.199G>T	c.(199-201)Gaa>Taa	p.E67*	MARVELD2_uc010ixf.3_Nonsense_Mutation_p.E67*|MARVELD2_uc003jws.1_Non-coding_Transcript	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	Homo sapiens MARVEL domain containing 2 (MARVELD2), transcript variant 1, mRNA.	67					sensory perception of sound	integral to membrane|tight junction				NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(3)|liver(1)|lung(4)|skin(1)|urinary_tract(1)	15		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		AAGTGACACAGAAGAACCAGC	0.532000														57			45		1.41504e-22	1.61962e-22	1	1	0
ARID4B	51742	broad.mit.edu	37	1	235338527	235338527	+	Silent	SNP	G	A	A			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr1:235338527G>A	uc021pks.1	-	21	4013	c.3636C>T	c.(3634-3636)ccC>ccT	p.P1212P	ARID4B_uc001hwq.3_Silent_p.P1212P|ARID4B_uc001hwr.3_Silent_p.P1126P|RBM34_uc001hwp.3_Non-coding_Transcript	NM_001206794	NP_001193723	Q4LE39	ARI4B_HUMAN	Homo sapiens AT rich interactive domain 4B (RBP1-like) (ARID4B), transcript variant 3, mRNA.	1212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			NS(1)|breast(2)|large_intestine(2)|lung(1)|ovary(2)	8	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TGTAAACTTTGGGTAATCGAT	0.373000														152			85		0	0	1	0	0
GPBP1	65056	broad.mit.edu	37	5	56558492	56558492	+	Silent	SNP	G	A	A	rs147297567		TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr5:56558492G>A	uc003jrk.4	+	10	1413	c.1356G>A	c.(1354-1356)ccG>ccA	p.P452P	GPBP1_uc003jrh.4_Silent_p.P445P|GPBP1_uc003jri.4_Silent_p.P274P|GPBP1_uc003jrj.4_Silent_p.P437P|GPBP1_uc021xyv.1_Silent_p.P274P	NM_001127236	NP_001190175	Q86WP2	GPBP1_HUMAN	Homo sapiens GC-rich promoter binding protein 1 (GPBP1), transcript variant 2, mRNA.	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding	p.K452N(1)		breast(2)|central_nervous_system(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(4)|ovary(1)|skin(1)|urinary_tract(1)	19		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		AGTTTGGACCGTGGAAGAACA	0.368000														65			54		0	0	1	0	0
SUCLG1	8802	broad.mit.edu	37	2	84658735	84658736	+	Frame_Shift_Del	DEL	TC	-	-	rs145106503		TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr2:84658735_84658736delTC	uc002son.3	-	6	914_915	c.721_722delGA	c.(721-723)gaafs	p.E241fs		NM_003849	NP_003840	P53597	SUCA_HUMAN	Homo sapiens succinate-CoA ligase, alpha subunit (SUCLG1), nuclear gene encoding mitochondrial protein, mRNA.	241					tricarboxylic acid cycle		ATP citrate synthase activity|GTP binding|succinate-CoA ligase (GDP-forming) activity	p.E241K(2)		kidney(4)|large_intestine(4)|lung(2)	10					Succinic acid(DB00139)	CAAAAAGATTTCGAGGCAGTCA	0.361													---	121	---	---	35	---					
VIL1	7429	broad.mit.edu	37	2	219290373	219290379	+	Frame_Shift_Del	DEL	CCACTAC	-	-			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr2:219290373_219290379delCCACTAC	uc002vib.3	+	2	208_214	c.186_192delCCACTAC	c.(184-192)atccactacfs	p.I62fs	VIL1_uc010zke.2_Intron|VIL1_uc002via.3_Frame_Shift_Del_p.I62fs|VIL1_uc002vic.1_Frame_Shift_Del_p.I62fs	NM_007127	NP_009058	P09327	VILI_HUMAN	Homo sapiens villin 1 (VIL1), mRNA.	62	Core.|Necessary for homodimerization.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			NS(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(20)|ovary(2)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	41		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTATGACATCCACTACTGGATTGGCC	0.599													---	40	---	---	21	---					
MTIF3	219402	broad.mit.edu	37	13	28011285	28011288	+	Frame_Shift_Del	DEL	CTTT	-	-			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr13:28011285_28011288delCTTT	uc001urh.3	-	1	1807_1810	c.583_586delAAAG	c.(583-588)aaaggafs	p.K195fs	MTIF3_uc021rhl.1_Frame_Shift_Del_p.K195fs|MTIF3_uc001uri.3_Frame_Shift_Del_p.K195fs|MTIF3_uc021rhm.1_Frame_Shift_Del_p.K195fs|MTIF3_uc001urj.3_Frame_Shift_Del_p.K195fs|MTIF3_uc001urk.3_Frame_Shift_Del_p.K195fs	NM_152912	NP_690876	Q9H2K0	IF3M_HUMAN	Homo sapiens mitochondrial translational initiation factor 3 (MTIF3), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA.	195					regulation of translational initiation|ribosome disassembly	mitochondrion	ribosomal small subunit binding|translation initiation factor activity			endometrium(1)|large_intestine(1)|lung(2)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	7		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.108)|OV - Ovarian serous cystadenocarcinoma(117;0.157)		ACATTTTTTCCTTTCTTTATGGTA	0.353													---	69	---	---	15	---					
B2M	567	broad.mit.edu	37	15	45003786	45003789	+	Frame_Shift_Del	DEL	TCTT	-	-			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr15:45003786_45003789delTCTT	uc001zuc.3	+	0	102_105	c.42_45delTCTT	c.(40-45)tctcttfs	p.S14fs	B2M_uc010uek.1_Frame_Shift_Del_p.S14fs|B2M_uc010bdx.1_Frame_Shift_Del_p.S14fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	Homo sapiens beta-2-microglobulin (B2M), mRNA.	14					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	Golgi membrane|MHC class I protein complex|early endosome membrane	protein binding	p.L15fs*41(6)|p.L13F(1)		breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(30)|kidney(8)|large_intestine(6)|lung(6)|ovary(2)|skin(2)|urinary_tract(1)	59		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		CGCTACTCTCTCTTTCTGGCCTGG	0.623													---	55	---	---	32	---					
SLC27A1	376497	broad.mit.edu	37	19	17597456	17597456	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A42H-01A-11D-A24R-08	TCGA-ER-A42H-10A-01D-A24R-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d688f07-6fb3-48f6-bcb3-348ae833a006	6e7c6102-f761-4eaf-bb7f-50f878f889d6	g.chr19:17597456delG	uc002ngu.1	+	1	302	c.252delG	c.(250-252)gcgfs	p.A84fs	SLC27A1_uc002ngt.1_Intron|SLC27A1_uc010xpp.1_5'UTR	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	Homo sapiens solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA.	84					cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding			breast(1)|endometrium(4)|kidney(2)|large_intestine(4)|lung(9)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	23						TCTTTCAGGCGGTAGTGCAGC	0.697													---	9	---	---	12	---					
