FFPE Cases
FFPE description from TCGA Tissue Sample Requirements (2013)

FFPE (formalin fixed paraffin embedded) samples are not suitable for molecular analysis because the RNA and DNA are trapped in the nucleic acid-protein cross linking from the fixation process.

Table 1.  Get Full Table

Barcode UUID Date Type Category Notes
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 03/13/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2018.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 04/04/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2019.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 05/31/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2020.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.