stddata__2014_06_14 Samples Report
- Overview
+ Introduction
- Summary

There were 161 redactions, 2872 replicate aliquots, 23 blacklisted aliquots, and 595 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 80 90 0 80 0 79 0 80 0 91
BLCA 367 218 252 112 352 0 252 0 267 127 130
BRCA 1096 999 1052 19 1044 526 1048 0 1041 408 976
CESC 257 180 203 0 257 0 196 0 257 0 39
CHOL 36 0 0 0 0 0 0 0 0 0 0
COAD 460 439 427 69 445 153 432 0 406 331 154
COADREAD 631 610 589 104 607 222 595 0 549 461 223
DLBC 58 33 28 0 48 0 28 0 27 0 0
ESCA 185 81 126 32 176 0 70 0 125 0 0
GBM 613 582 571 0 414 540 160 565 0 214 290
HNSC 528 422 511 108 527 0 497 0 512 212 306
KICH 113 94 66 0 66 0 66 0 66 0 66
KIRC 537 509 514 0 535 72 518 0 506 454 417
KIRP 274 197 212 0 242 16 198 0 242 0 168
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 388 486 52 512 27 486 0 504 258 289
LIHC 377 164 208 0 238 0 200 0 268 0 202
LUAD 585 473 493 120 555 32 488 0 491 237 229
LUSC 504 414 490 0 492 154 489 0 467 195 178
MESO 87 17 37 0 37 0 36 0 26 0 0
OV 602 587 576 0 584 574 296 570 453 412 316
PAAD 185 89 102 0 130 0 96 0 96 0 91
PCPG 179 57 172 0 179 0 178 0 179 0 0
PRAD 500 257 373 115 336 0 374 0 417 164 261
READ 171 171 162 35 162 69 163 0 143 130 69
SARC 261 108 169 0 170 0 103 0 194 0 0
SKCM 470 366 384 118 403 0 371 0 409 204 343
STAD 443 337 370 107 373 0 274 0 353 264 221
THCA 503 490 494 98 496 0 494 0 495 222 402
UCEC 560 490 525 106 543 54 527 0 534 200 248
UCS 57 57 56 0 57 0 57 0 56 0 57
UVM 80 0 0 0 0 0 0 0 0 0 0
Totals 10896 8499 9346 1091 9647 2217 8355 1135 8802 4032 5740
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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