Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RIMKLA	284716	bcgsc.ca	37	1	42880516	42880516	+	Silent	SNP	T	T	C	rs1055055	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	4	0	0	0
C1orf228	339541	broad.mit.edu	37	1	45166683	45166683	+	Silent	SNP	C	C	T	rs76132381	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271912	45271912	+	Silent	SNP	G	G	A	rs17886118	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	0	1	0	0
JAK1	3716	bcgsc.ca	37	1	65311262	65311262	+	Silent	SNP	G	G	A	rs2230587	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	2	0	0	0
LRRC40	55631	bcgsc.ca	37	1	70625071	70625071	+	Missense_Mutation	SNP	G	G	A	rs145682711	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	2	0	0	0
GBP1P1	400759	bcgsc.ca	37	1	89885776	89885776	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GLMN	11146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92712112	92712112	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	7	0	7	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474799	145474799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	2	0	0	0
SLC27A3	11000	hgsc.bcm.edu	37	1	153748355	153748355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
DNAH14	127602	broad.mit.edu	37	1	225533684	225533684	+	Missense_Mutation	SNP	A	A	G	rs6667999	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
H3F3A	3020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226252155	226252155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	434	14	418	0	2
IBA57	200205	hgsc.bcm.edu	37	1	228353651	228353651	+	Missense_Mutation	SNP	G	G	C	rs55873785		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371484	240371484	+	Silent	SNP	A	A	T	rs202006855	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ADARB2-AS1	642394	bcgsc.ca	37	10	1578116	1578116	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ADARB2-AS1	642394	bcgsc.ca	37	10	1578121	1578121	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912228	11912228	+	Silent	SNP	G	G	A	rs74657303	byfrequency;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ANXA2P3	305	ucsc.edu;bcgsc.ca	37	10	66585618	66585618	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91518639	91518642	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGTC	AGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103371096	103371097	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	0	2	0	0
WDR11	55717	broad.mit.edu	37	10	122664295	122664295	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	30	30	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NUDT22	84304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63994397	63994397	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	40	17	23	0	0
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65314984	65314984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	33	25	8	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CD248	57124	hgsc.bcm.edu	37	11	66084284	66084284	+	Missense_Mutation	SNP	C	C	T	rs111751859		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70544812	70544812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SYTL2	54843	bcgsc.ca	37	11	85445593	85445593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	4	0	0	0
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117335893	117335893	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121028854	121028854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
IQSEC3	440073	hgsc.bcm.edu	37	12	248155	248155	+	Silent	SNP	C	C	T	rs55923022		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MANSC1	54682	broad.mit.edu	37	12	12483162	12483162	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	8	8	0	0	0
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51685869	51685869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
METTL7B	196410	bcgsc.ca	37	12	56077740	56077740	+	Silent	SNP	C	C	T	rs11615467	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398081	56398081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	14	8	6	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	112690349	112690349	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PDS5B	23047	bcgsc.ca	37	13	33232435	33232435	+	Silent	SNP	A	A	G	rs2301393	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77745686	77745689	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ACAG	ACAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98658494	98658494	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	25	13	12	0	0
OR4Q3	441669	hgsc.bcm.edu	37	14	20215780	20215780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CTAGE5	4253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	39771394	39771394	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	23	15	8	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	58833675	58833676	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SAMD15	161394	broad.mit.edu	37	14	77844127	77844127	+	Silent	SNP	G	G	A	rs61990322	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	86089505	86089505	+	Silent	SNP	C	C	A	rs35699071	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
IFI27L2	83982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94594238	94594240	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25222108	25222108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	212	212	0	0	0
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	44069077	44069078	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	10	10	0	0	0
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85326912	85326912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	0	1	0	0
MAN2A2	4122	bcgsc.ca	37	15	91452595	91452595	+	Missense_Mutation	SNP	A	A	G	rs2106673	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	9	9	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	RNA	SNP	G	G	A	rs201972834		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	112	107	5	0	0
CCDC154	645811	broad.mit.edu	37	16	1486505	1486505	+	Silent	SNP	G	G	A	rs184119365	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
AMDHD2	51005	hgsc.bcm.edu;bcgsc.ca	37	16	2571079	2571081	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23706392	23706392	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30582444	30582444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	11	9	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CTCF	10664	broad.mit.edu;bcgsc.ca	37	16	67654677	67654677	+	Silent	SNP	C	C	T	rs143837268	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	7	7	0	0	0
MBTPS1	8720	bcgsc.ca	37	16	84115393	84115393	+	Silent	SNP	G	G	A	rs12933523	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84883096	84883096	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ACSF3	197322	ucsc.edu;bcgsc.ca	37	16	89167094	89167094	+	Missense_Mutation	SNP	T	T	C	rs7188200	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	6	0	6	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
OR3A1	4994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3195043	3195043	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693384	4693384	+	Silent	SNP	T	T	C	rs150754782		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SENP3-EIF4A1	0	broad.mit.edu	37	17	7476029	7476029	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842968	7842970	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	2	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40342700	40342700	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	38	16	22	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	48638951	48638951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
AKAP1	8165	broad.mit.edu	37	17	55183402	55183402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	4	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GAREM	64762	hgsc.bcm.edu	37	18	29868135	29868161	+	In_Frame_Del	DEL	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ATP8B1	5205	broad.mit.edu	37	18	55342160	55342160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	19	19	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LPPR3	0	hgsc.bcm.edu	37	19	813220	813220	+	Missense_Mutation	SNP	T	T	C	rs351994		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	964309	964309	+	Nonsense_Mutation	SNP	C	C	A	rs143790786	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	3	1	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003441	1003441	+	Missense_Mutation	SNP	C	C	T	rs143106549		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1009485	1009485	+	Missense_Mutation	SNP	C	C	G	rs10401245	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	11	3	8	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	6	0	6	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	9	5	4	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6906459	6906459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
OR10H2	26538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15839027	15839027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SLC7A9	11136	bcgsc.ca	37	19	33355553	33355553	+	Missense_Mutation	SNP	C	C	T	rs138156402		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876474	38876474	+	Silent	SNP	C	C	T	rs183192050	by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914646	46914646	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	5	2	3	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ZNF582	147948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56901430	56901430	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	4	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
HADHB	3032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26502030	26502030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	241	114	127	0	0
EHD3	30845	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31489342	31489342	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PKDCC	91461	hgsc.bcm.edu	37	2	42275726	42275726	+	Silent	SNP	C	C	G	rs11891679	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98920228	98920228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125521704	125521704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SSB	6741	hgsc.bcm.edu;bcgsc.ca	37	2	170667792	170667794	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTG	GTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FZD5	7855	hgsc.bcm.edu	37	2	208632989	208632989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SPATA3	130560	broad.mit.edu	37	2	231865144	231865144	+	Missense_Mutation	SNP	G	G	C	rs12105962	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LOC150935	0	bcgsc.ca	37	2	240721557	240721557	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NDUFA10	4705	broad.mit.edu	37	2	240944641	240944641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	85	85	0	0	0
ANKMY1	51281	bcgsc.ca	37	2	241463595	241463595	+	Missense_Mutation	SNP	T	T	C	rs35996697	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	3	3	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PLK1S1	55857	broad.mit.edu	37	20	21196288	21196288	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FAM182B	728882	ucsc.edu	37	20	25755465	25755465	+	RNA	SNP	C	C	G	rs139557702		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FRG1B	284802	broad.mit.edu;bcgsc.ca	37	20	29628289	29628289	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	179	179	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
COL9A3	1299	ucsc.edu;bcgsc.ca	37	20	61472012	61472012	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	3	1	2	0	0
KRTAP13-4	284827	bcgsc.ca	37	21	31802768	31802768	+	Missense_Mutation	SNP	G	G	A	rs2226548	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43954845	43954845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	6	5	1	0	0
C22orf34	348645	bcgsc.ca;mdanderson.org	37	22	50017837	50017837	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50720456	50720456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	99	76	23	0	0
CAND2	23066	hgsc.bcm.edu	37	3	12851676	12851676	+	Missense_Mutation	SNP	G	G	A	rs183581869		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CCR4	1233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32995848	32995848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KIAA1143	57456	ucsc.edu;bcgsc.ca	37	3	44794960	44794960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	27	27	0	0	0
MAGI1	9223	bcgsc.ca	37	3	65428493	65428493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KIAA2018	205717	ucsc.edu	37	3	113376119	113376119	+	Silent	SNP	C	C	T	rs62265538		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	87	10	77	0	0
GRAMD1C	54762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113655144	113655144	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LRRC58	116064	broad.mit.edu	37	3	120050053	120050055	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712436	121712436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PARP15	165631	broad.mit.edu;bcgsc.ca	37	3	122296638	122296638	+	Missense_Mutation	SNP	G	G	A	rs1875272	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219606	138219606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	13	0	13	0	0
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150804785	150804785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ADIPOQ	9370	bcgsc.ca	37	3	186570892	186570892	+	Silent	SNP	T	T	G	rs2241766	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	9	9	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	34	7	27	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388790	1388790	+	Missense_Mutation	SNP	T	T	C	rs79415192		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	19	13	6	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	32	26	6	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	0	2	0	0
CWH43	80157	broad.mit.edu	37	4	49032891	49032891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537435	88537435	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537456	88537456	+	Silent	SNP	C	C	T	rs111240022	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ANKRD50	57182	broad.mit.edu	37	4	125600062	125600062	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FRG1	2483	broad.mit.edu	37	4	190878615	190878615	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	179	179	0	0	0
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244384	1244384	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030793	79030793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	88100446	88100446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	7	6	1	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109828	98109828	+	Silent	SNP	G	G	A	rs2547973	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
APC	324	hgsc.bcm.edu;bcgsc.ca	37	5	112175676	112175677	+	Frame_Shift_Del	DEL	AG	AG	-	rs121913334	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307491	140307491	+	Silent	SNP	C	C	T	rs116016831	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
PCDHGA6	56109	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140755561	140755561	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167645355	167645355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
WWC1	23286	bcgsc.ca	37	5	167868779	167868779	+	Silent	SNP	A	A	G	rs3733981	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
CREBRF	153222	hgsc.bcm.edu	37	5	172513606	172513606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	3	3	0	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659730	172659730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	4	4	0	0	0
KIAA1191	57179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	175774669	175774672	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TTTC	TTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GPRIN1	114787	broad.mit.edu;bcgsc.ca	37	5	176024723	176024723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176825193	176825193	+	Missense_Mutation	SNP	C	C	T	rs147711480	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MAK	4117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	10784764	10784764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
VARS2	57176	broad.mit.edu	37	6	30888510	30888510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	18	18	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41652375	41652375	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	11	7	4	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46657547	46657547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84904675	84904675	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
UBE2J1	51465	bcgsc.ca	37	6	90042814	90042814	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LIN28B	389421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105526424	105526424	+	Silent	SNP	C	C	A	rs140802515	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
METTL24	728464	hgsc.bcm.edu	37	6	110679413	110679413	+	Silent	SNP	A	A	G	rs62435951		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170033154	170033154	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LOC100131257	0	bcgsc.ca	37	7	7118950	7118950	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	14	5	9	0	0
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44151812	44151812	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55224349	55224349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ELN	2006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73462021	73462021	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
C7orf60	154743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112579732	112579732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LOC285972	0	broad.mit.edu	37	7	150140631	150140633	+	RNA	DEL	GGT	GGT	-	rs5888411	bycluster;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SLC4A2	6522	bcgsc.ca	37	7	150772800	150772800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	47	40	7	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296613	6296613	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MTMR9	66036	broad.mit.edu	37	8	11172527	11172527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
INTS9	55756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28654146	28654146	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	9	4	5	0	0
ANK1	286	broad.mit.edu	37	8	41575158	41575158	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	1	1	0	0	0
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100821724	100821724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GPR20	2843	ucsc.edu	37	8	142367335	142367335	+	Missense_Mutation	SNP	T	T	C	rs10875472	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	2	0	2	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940706	144940706	+	Missense_Mutation	SNP	C	C	T	rs112377501	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998948	144998948	+	Missense_Mutation	SNP	G	G	A	rs192022872	by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68433564	68433564	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85605354	85605354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88933891	88933894	+	Frame_Shift_Del	DEL	ATTA	ATTA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ATTA	ATTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
SPATA31C2	645961	ucsc.edu	37	9	90749692	90749692	+	Silent	SNP	C	C	T	rs72498540	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu	37	9	133556930	133556930	+	Silent	SNP	C	C	T	rs12004652	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
NUP214	8021	bcgsc.ca	37	9	134019849	134019849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TUBBP5	643224	bcgsc.ca	37	9	141069885	141069885	+	RNA	SNP	A	A	C	rs62581043	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13169	13169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	957	790	166	0	1
MAGEB2	4113	broad.mit.edu;bcgsc.ca	37	X	30236700	30236700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028069	37028069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51640148	51640148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	165	165	0	0	0
IQSEC2	23096	broad.mit.edu	37	X	53264131	53264133	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53576374	53576374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	14	0	14	0	0
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76939349	76939349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ABCD1	215	hgsc.bcm.edu;bcgsc.ca	37	X	153001693	153001695	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTC	GTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
GDF15	9518	broad.mit.edu	37	19	18499102	18499103	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
ABLIM2	84448	hgsc.bcm.edu;bcgsc.ca	37	4	8108224	8108225	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	0	0	0	0	0
