Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	bcgsc.ca	37	1	2560882	2560882	+	Silent	SNP	G	G	A	rs4648658		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MMEL1	79258	bcgsc.ca	37	1	2560903	2560903	+	Silent	SNP	T	T	G	rs4648659		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6488334	6488334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7725013	7725013	+	Silent	SNP	G	G	A	rs149314642		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ESPNP	284729	bcgsc.ca	37	1	17029513	17029513	+	RNA	SNP	C	C	G	rs523936	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PADI1	29943	hgsc.bcm.edu	37	1	17550187	17550187	+	Silent	SNP	C	C	T	rs143089550		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19600386	19600386	+	RNA	SNP	C	C	T	rs112053480	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
HSPG2	3339	bcgsc.ca	37	1	22154845	22154845	+	Silent	SNP	A	A	G	rs2228347	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	6	0	0	0
RAD54L	8438	bcgsc.ca	37	1	46743900	46743900	+	Silent	SNP	C	C	T	rs1048771	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	6	0	0	0
FNDC7	163479	bcgsc.ca	37	1	109268441	109268441	+	Missense_Mutation	SNP	G	G	A	rs11582005	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ECM1	1893	bcgsc.ca	37	1	150484987	150484987	+	Missense_Mutation	SNP	G	G	A	rs13294	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
C1orf68	100129271	broad.mit.edu;bcgsc.ca	37	1	152692588	152692588	+	Silent	SNP	A	A	G	rs944682	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
OR2M5	127059	bcgsc.ca	37	1	248309020	248309020	+	Missense_Mutation	SNP	G	G	A	rs139290187	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
IL15RA	3601	bcgsc.ca	37	10	6008172	6008172	+	Silent	SNP	C	C	T	rs2296139	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
WDFY4	57705	broad.mit.edu	37	10	49934020	49934020	+	Missense_Mutation	SNP	G	G	A	rs34731704	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PALD1	27143	bcgsc.ca	37	10	72293713	72293713	+	Silent	SNP	C	C	T	rs12764399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824624	824624	+	Missense_Mutation	SNP	A	A	G	rs140634178	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	43	42	1	0	0
MUC2	4583	bcgsc.ca	37	11	1093094	1093094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730589	5730589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	0	2	0	0
CD82	3732	bcgsc.ca	37	11	44636839	44636839	+	Silent	SNP	C	C	T	rs883752	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	10	10	0	0	0
AHNAK	79026	hgsc.bcm.edu	37	11	62296271	62296271	+	Missense_Mutation	SNP	G	G	A	rs145366859		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP5-7	440050	bcgsc.ca	37	11	71238705	71238705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ARHGEF17	9828	hgsc.bcm.edu	37	11	73020058	73020058	+	Silent	SNP	C	C	T	rs12272360	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
WNT11	7481	hgsc.bcm.edu	37	11	75917419	75917419	+	Silent	SNP	C	C	G	rs138104027	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CTSC	1075	broad.mit.edu	37	11	88068252	88068252	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TMPRSS5	80975	bcgsc.ca	37	11	113570405	113570405	+	Silent	SNP	T	T	C	rs4936280	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
OR10G4	390264	bcgsc.ca	37	11	123886865	123886865	+	Missense_Mutation	SNP	T	T	A	rs55884373		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SCARNA11	677780	ucsc.edu	37	12	6690682	6690682	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TAS2R43	259289	hgsc.bcm.edu	37	12	11244723	11244723	+	Missense_Mutation	SNP	A	A	C	rs191086711	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
BCL2L14	79370	bcgsc.ca	37	12	12247852	12247852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	344	227	117	0	0
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94641749	94641749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110765566	110765566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
TPTE2	93492	bcgsc.ca	37	13	20000609	20000609	+	Missense_Mutation	SNP	C	C	T	rs141691551		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
EEF1DP3	196549	broad.mit.edu	37	13	32527564	32527565	+	RNA	DEL	AA	AA	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CLN5	1203	hgsc.bcm.edu	37	13	77566320	77566320	+	Silent	SNP	C	C	G	rs138037471	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
IRS2	8660	bcgsc.ca	37	13	110435953	110435953	+	Silent	SNP	A	A	G	rs4773092	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110861756	110861756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	6	0	0	0
UPF3A	65110	hgsc.bcm.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C	rs76186578		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
APEX1	328	ucsc.edu;bcgsc.ca	37	14	20925154	20925154	+	Missense_Mutation	SNP	T	T	G	rs1130409	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	4	2	2	0	0
ARID4A	5926	bcgsc.ca	37	14	58768333	58768333	+	Silent	SNP	C	C	T	rs45562837	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
L3HYPDH	112849	hgsc.bcm.edu	37	14	59950676	59950676	+	Missense_Mutation	SNP	A	A	C	rs34741399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61190755	61190755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TRIP11	9321	hgsc.bcm.edu	37	14	92472567	92472567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
HERC2P3	283755	broad.mit.edu	37	15	20644611	20644611	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	27	27	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921115	24921115	+	Missense_Mutation	SNP	C	C	A	rs35022251	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TRPM1	4308	broad.mit.edu	37	15	31359284	31359284	+	Silent	SNP	T	T	C	rs200934141	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
C15orf39	56905	bcgsc.ca	37	15	75499995	75499995	+	Missense_Mutation	SNP	T	T	G	rs28509789	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	22	22	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TM2D3	80213	hgsc.bcm.edu;broad.mit.edu	37	15	102192536	102192553	+	In_Frame_Del	DEL	CCCCTCAGCGGGAGCACC	CCCCTCAGCGGGAGCACC	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	CCCCTCAGCGGGAGCACC	CCCCTCAGCGGGAGCACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu	37	16	815740	815740	+	Missense_Mutation	SNP	G	G	A	rs139851878		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306347	1306347	+	Silent	SNP	G	G	C	rs2272969		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu	37	16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	rs2667674	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	12	0	12	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156021	2156021	+	Silent	SNP	A	A	G	rs28575767	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	15	15	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2167874	2167874	+	Silent	SNP	G	G	A	rs35842		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	5	0	0	0
TBC1D24	57465	broad.mit.edu	37	16	2550269	2550269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	rs224222	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33504557	33504557	+	RNA	SNP	C	C	T	rs3878399		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	13	8	5	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	8	7	1	0	0
CLEC18B	497190	bcgsc.ca	37	16	74451970	74451970	+	Missense_Mutation	SNP	G	G	C	rs3869428		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84164035	84164035	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	rs77382359		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190943	39190943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274214	39274214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274426	39274426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296412	39296412	+	Missense_Mutation	SNP	T	T	A	rs200470462		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45214646	45214646	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45216218	45216218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	4	4	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MAP2K6	5608	bcgsc.ca	37	17	67513003	67513003	+	Silent	SNP	C	C	A	rs1133228	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288472	74288472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288480	74288480	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ANKRD20A5P	440482	bcgsc.ca	37	18	14183680	14183680	+	RNA	SNP	G	G	A	rs75090388	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SERPINB3	6317	bcgsc.ca	37	18	61323012	61323012	+	Missense_Mutation	SNP	C	C	G	rs3180227	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752263	76752263	+	Missense_Mutation	SNP	C	C	A	rs35091814		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	1	4	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
S1PR2	9294	hgsc.bcm.edu	37	19	10334797	10334797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409472	13409472	+	Missense_Mutation	SNP	T	T	A	rs16023	byfrequency;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FCHO1	23149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17883278	17883278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980857	18980857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ZNF626	199777	hgsc.bcm.edu	37	19	20807353	20807353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183316	33183316	+	Silent	SNP	A	A	G	rs8109823		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38684392	38684392	+	Silent	SNP	C	C	T	rs143617253	by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	0	2	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu	37	19	40399430	40399430	+	Missense_Mutation	SNP	T	T	C	rs885723	bycluster;byfrequency;by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184059	48184059	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	0	5	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SHANK1	50944	hgsc.bcm.edu	37	19	51171188	51171188	+	Silent	SNP	G	G	A	rs750578		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM110C	642273	hgsc.bcm.edu	37	2	45895	45895	+	Missense_Mutation	SNP	A	A	G	rs4241318		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TEKT4	150483	hgsc.bcm.edu	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	rs201662522	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	0	6	0	0
TBC1D8	11138	bcgsc.ca	37	2	101627925	101627925	+	Missense_Mutation	SNP	C	C	T	rs1062062	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GPR45	11250	hgsc.bcm.edu	37	2	105858993	105858993	+	Silent	SNP	C	C	G	rs140158310	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827800	241827800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632707	29632707	+	RNA	SNP	G	G	A	rs6057187		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	36	34	2	0	0
ID1	3397	hgsc.bcm.edu	37	20	30193224	30193224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43378972	43378972	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	9	6	3	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43379264	43379264	+	Missense_Mutation	SNP	A	A	C	rs6073538	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43379268	43379268	+	Missense_Mutation	SNP	C	C	A	rs13037900	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu	37	20	57767683	57767683	+	Missense_Mutation	SNP	C	C	A	rs183636700		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RBBP8NL	140893	hgsc.bcm.edu	37	20	60990257	60990257	+	Silent	SNP	G	G	T	rs200432639		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61436330	61436330	+	Missense_Mutation	SNP	A	A	G	rs201442562		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	4	1	0	0
CBR3	874	bcgsc.ca	37	21	37507769	37507769	+	Silent	SNP	C	C	T	rs881712	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
U2AF1	7307	hgsc.bcm.edu	37	21	44513243	44513243	+	Missense_Mutation	SNP	G	G	A	rs200044775		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	11	11	0	0	0
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994282	45994282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020743	46020743	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46924426	46924443	+	In_Frame_Del	DEL	GGCCCCCCAGGCCCCCCA	GGCCCCCCAGGCCCCCCA	-	rs149296338	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	GGCCCCCCAGGCCCCCCA	GGCCCCCCAGGCCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
POM121L9P	29774	bcgsc.ca	37	22	24659578	24659578	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SEC14L6	730005	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30921859	30921859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RRP7B	91695	bcgsc.ca	37	22	42972485	42972485	+	RNA	SNP	C	C	T	rs71329148		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
NBEAL2	23218	broad.mit.edu	37	3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395586	49395586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	33	33	0	0	0
MST1	4485	hgsc.bcm.edu	37	3	49723379	49723379	+	Silent	SNP	T	T	C	rs4052580	bycluster;by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	7	4	3	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PLXND1	23129	bcgsc.ca	37	3	129293256	129293256	+	Missense_Mutation	SNP	T	T	C	rs2255703	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
CPA3	1359	broad.mit.edu	37	3	148582960	148582960	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KCNMB3	27094	bcgsc.ca	37	3	178968634	178968634	+	Missense_Mutation	SNP	C	C	T	rs7645550	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
MCCC1	56922	bcgsc.ca	37	3	182755209	182755209	+	Missense_Mutation	SNP	T	T	G	rs2270968	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MAP6D1	79929	hgsc.bcm.edu	37	3	183543291	183543291	+	Silent	SNP	G	G	A	rs263006	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
EPHB3	2049	bcgsc.ca	37	3	184299167	184299167	+	Silent	SNP	T	T	C	rs1138510	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
LRRC15	131578	bcgsc.ca	37	3	194081392	194081392	+	Silent	SNP	G	G	A	rs923936	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MUC20	200958	hgsc.bcm.edu	37	3	195452155	195452155	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MFI2	4241	hgsc.bcm.edu	37	3	196754781	196754781	+	Missense_Mutation	SNP	A	A	G	rs149836828	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	rs199774688	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388728	1388728	+	Silent	SNP	C	C	T	rs9760383	bycluster;byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	38	3	35	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	9	6	3	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	38	2	36	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389003	1389003	+	Missense_Mutation	SNP	G	G	C	rs148482314	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	9	3	6	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM86EP	348926	broad.mit.edu	37	4	3949453	3949453	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	4	2	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38016372	38016372	+	Silent	SNP	G	G	A	rs61731587		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
REST	5978	ucsc.edu	37	4	57797283	57797283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
YTHDC1	91746	broad.mit.edu	37	4	69202915	69202915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	7	7	0	0	0
MARCH1	55016	bcgsc.ca	37	4	164466824	164466824	+	Silent	SNP	C	C	T	rs13130399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7766806	7766806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CDH12	1010	bcgsc.ca	37	5	21752050	21752050	+	Silent	SNP	A	A	G	rs6451992	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
PRDM6	93166	hgsc.bcm.edu	37	5	122425899	122425899	+	Missense_Mutation	SNP	C	C	G	rs113582737		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626549	127626549	+	Missense_Mutation	SNP	T	T	G	rs183350360		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PCDHB6	56130	hgsc.bcm.edu	37	5	140531592	140531592	+	Missense_Mutation	SNP	C	C	T	rs55834559	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	7	7	0	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559532	140559532	+	Missense_Mutation	SNP	G	G	C	rs2740582	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	7	0	7	0	0
PCDHB16	57717	hgsc.bcm.edu	37	5	140564048	140564048	+	Missense_Mutation	SNP	G	G	C	rs76350555		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	1	2	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	6	0	0	0
PCDHB11	56125	hgsc.bcm.edu	37	5	140581220	140581220	+	Missense_Mutation	SNP	C	C	A	rs799833		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	3	0	0	0
PCDHB12	56124	hgsc.bcm.edu	37	5	140590211	140590211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	11	0	11	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838632	145838632	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838656	145838656	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838662	145838662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
LSM11	134353	hgsc.bcm.edu	37	5	157170986	157170986	+	Silent	SNP	G	G	A	rs2279771		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu	37	5	161529571	161529571	+	Missense_Mutation	SNP	A	A	G	rs211035	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180036020	180036020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
BTN1A1	696	bcgsc.ca	37	6	26501897	26501897	+	Silent	SNP	T	T	C	rs1321479	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629194	32629194	+	Silent	SNP	G	G	A	rs9273650	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
AARS2	57505	bcgsc.ca	37	6	44270870	44270870	+	Missense_Mutation	SNP	C	C	T	rs35623954	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
CYP2W1	54905	hgsc.bcm.edu	37	7	1028376	1028376	+	Missense_Mutation	SNP	C	C	T	rs149976257	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	0	2	0	0
AMZ1	155185	hgsc.bcm.edu	37	7	2742411	2742411	+	Silent	SNP	A	A	G	rs61738701	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5352665	5352665	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	7	0	5	2	0
TNRC18	84629	hgsc.bcm.edu	37	7	5352791	5352796	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	GCTGCT	GCTGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
NPVF	64111	hgsc.bcm.edu	37	7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30643172	30643172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	17	9	8	0	0
EPDR1	54749	hgsc.bcm.edu	37	7	37960577	37960577	+	Silent	SNP	C	C	A	rs147877097		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	3	1	2	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45123906	45123906	+	Missense_Mutation	SNP	T	T	G	rs61740887	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
GATS	352954	bcgsc.ca	37	7	99821685	99821685	+	Silent	SNP	C	C	T	rs863450	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	4	4	0	0	0
LOC349160	0	bcgsc.ca	37	7	136623214	136623214	+	RNA	SNP	C	C	A	rs36210734	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	137761321	137761321	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462381	149462381	+	Missense_Mutation	SNP	C	C	T	rs112589121		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	1	4	0	0
GBX1	2636	hgsc.bcm.edu	37	7	150864240	150864240	+	Silent	SNP	G	G	C	rs13241978	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu	37	7	153750019	153750019	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
USP17L2	377630	hgsc.bcm.edu	37	8	11996252	11996252	+	Silent	SNP	G	G	A	rs71237667	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FAM86B1	85002	hgsc.bcm.edu	37	8	12043032	12043032	+	Missense_Mutation	SNP	C	C	A	rs9774712	bycluster;alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
PROSC	11212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37632983	37632983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72123405	72123405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98712028	98712028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
POU5F1B	5462	broad.mit.edu;bcgsc.ca	37	8	128428751	128428751	+	Missense_Mutation	SNP	A	A	G	rs71520669	bycluster;byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	1	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940378	144940378	+	Silent	SNP	G	G	A	rs62641757		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	0	2	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TOPORS	10210	bcgsc.ca	37	9	32542204	32542204	+	Silent	SNP	A	A	G	rs10971019	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	6	5	1	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5	0	5	0	0
PRSS3	5646	bcgsc.ca	37	9	33797991	33797991	+	Missense_Mutation	SNP	G	G	A	rs146966861	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
FOXD4L5	653427	hgsc.bcm.edu	37	9	70177822	70177822	+	Silent	SNP	T	T	C	rs2921291		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	88968081	88968081	+	Missense_Mutation	SNP	G	G	A	rs142251867		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
PHF2	5253	hgsc.bcm.edu	37	9	96439007	96439007	+	Silent	SNP	G	G	T	rs10992855		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331706	107331706	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133914550	133914550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	G	A	rs10521	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070950	141070950	+	RNA	SNP	A	A	G	rs77284214	bycluster;byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RNR1	6052	bcgsc.ca	37	MT	720	720	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	26736	20447	6250	18	21
RNR2	6053	broad.mit.edu	37	MT	2712	2712	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	47798	46902	860	30	6
ND2	0	bcgsc.ca	37	MT	5364	5364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	63329	60931	2355	24	19
ND2	0	bcgsc.ca	37	MT	5479	5479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	4704	4132	571	0	1
COX1	5742	broad.mit.edu	37	MT	6444	6444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	95814	59541	36209	35	29
ND4	0	broad.mit.edu	37	MT	11461	11461	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	30639	26743	3813	47	35
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11864	11864	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	84638	70484	14117	20	16
ND5	0	broad.mit.edu	37	MT	13369	13369	+	Missense_Mutation	SNP	T	T	C	rs3899498	byfrequency;alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	5966	5344	606	6	10
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14767	14767	+	Silent	SNP	T	T	C	rs3135031	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	134	131	3	0	0
GAGE2A	729447	hgsc.bcm.edu	37	X	49208323	49208323	+	Missense_Mutation	SNP	G	G	C	rs2142399	by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
RGAG1	57529	bcgsc.ca	37	X	109697443	109697443	+	Missense_Mutation	SNP	T	T	C	rs41306249	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SOWAHD	347454	hgsc.bcm.edu	37	X	118892888	118892888	+	Silent	SNP	G	G	C	rs2782222	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
MAGEC1	9947	hgsc.bcm.edu	37	X	140994252	140994252	+	Missense_Mutation	SNP	C	C	A	rs145693793	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
IRAK1	3654	bcgsc.ca	37	X	153284483	153284483	+	Silent	SNP	G	G	A	rs1059701	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	2	2	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890869	32890870	+	RNA	INS	-	-	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP4-5	85289	bcgsc.ca	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
AGAP3	116988	broad.mit.edu	37	7	150831565	150831566	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011708	46011709	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020747	46020748	+	Missense_Mutation	DNP	AC	AC	GT	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	0	0	0	0	0
