Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12262126	12262126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	8	7	1	0	0
MST1L	11223	bcgsc.ca	37	1	17085795	17085795	+	Silent	SNP	G	G	T	rs1057379	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	90	85	5	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FOXD3	27022	hgsc.bcm.edu	37	1	63788951	63788951	+	Silent	SNP	C	C	A	rs2274187	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
WDR78	79819	hgsc.bcm.edu	37	1	67370954	67370954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
SRSF11	9295	broad.mit.edu;bcgsc.ca	37	1	70716183	70716183	+	Silent	SNP	A	A	C	rs41287904	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NR5A2	2494	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200008804	200008804	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
RHOU	58480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228879456	228879456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	46	22	24	0	0
IRF2BP2	359948	hgsc.bcm.edu	37	1	234745009	234745009	+	Missense_Mutation	SNP	A	A	G	rs7545855	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
C10orf113	387638	hgsc.bcm.edu	37	10	21435342	21435342	+	Missense_Mutation	SNP	A	A	T	rs200339723		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ARMC4	55130	ucsc.edu	37	10	28250635	28250635	+	Silent	SNP	A	A	C	rs75389371		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112350315	112350315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	9	2	7	0	0
PDCD4	27250	ucsc.edu	37	10	112657841	112657841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	38	38	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64573212	64573216	+	Frame_Shift_Del	DEL	GATCT	GATCT	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	GATCT	GATCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65826803	65826803	+	Silent	SNP	C	C	T	rs143148362	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
YIF1A	10897	broad.mit.edu	37	11	66055601	66055601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	73	73	0	0	0
IQSEC3	440073	hgsc.bcm.edu	37	12	248155	248155	+	Silent	SNP	C	C	T	rs55923022		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PKP2	5318	hgsc.bcm.edu	37	12	33049590	33049590	+	Missense_Mutation	SNP	C	C	T	rs143004808		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
DBX2	440097	hgsc.bcm.edu	37	12	45444516	45444516	+	Silent	SNP	G	G	A	rs139910495		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
SCARB1	949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125279751	125279751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	1	1	0	0
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132426223	132426223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	28	17	11	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38148740	38148740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435728	110435728	+	Silent	SNP	C	C	G	rs75172981		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	1	1	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	2	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	12	12	0	0	0
ARHGEF40	55701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21544607	21544607	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SYNE3	161176	broad.mit.edu	37	14	95923568	95923568	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	25	8	17	0	0
SPTBN5	51332	ucsc.edu;bcgsc.ca	37	15	42173312	42173312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	1	1	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369365	65369365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CASKIN1	57524	hgsc.bcm.edu	37	16	2230855	2230855	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZSCAN10	84891	hgsc.bcm.edu	37	16	3139879	3139879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
LOC100132247	0	broad.mit.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C	rs202011711	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1195	23	1171	1	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
WWOX	51741	broad.mit.edu	37	16	78133685	78133685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	2	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904891	21904891	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56399729	56399729	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	4	4	0	0	0
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61787883	61787883	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	3	3	0	0	0
BIRC5	332	broad.mit.edu	37	17	76219637	76219637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	5	5	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FASN	2194	hgsc.bcm.edu	37	17	80043739	80043739	+	Silent	SNP	A	A	G	rs2229422	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	5	3	2	0	0
APC2	10297	hgsc.bcm.edu	37	19	1457006	1457006	+	Missense_Mutation	SNP	C	C	T	rs201709261		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TBXA2R	6915	hgsc.bcm.edu	37	19	3600198	3600198	+	Silent	SNP	C	C	T	rs5748	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
CACTIN	58509	bcgsc.ca	37	19	3611972	3611972	+	Silent	SNP	G	G	A	rs2158935	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	8	8	0	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NR2F6	2063	hgsc.bcm.edu	37	19	17346441	17346441	+	Silent	SNP	A	A	T	rs146497684		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	7	4	3	0	0
GDF15	9518	bcgsc.ca	37	19	18497024	18497024	+	Missense_Mutation	SNP	G	G	C	rs1059519	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	14	14	0	0	0
ZNF99	7652	bcgsc.ca	37	19	22941591	22941591	+	Missense_Mutation	SNP	A	A	T	rs62119159	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MAP3K10	4294	hgsc.bcm.edu	37	19	40720079	40720079	+	Silent	SNP	C	C	T	rs3746005		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
CEACAM20	125931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45028106	45028106	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	18	8	10	0	0
PRR24	255783	hgsc.bcm.edu	37	19	47778412	47778412	+	Missense_Mutation	SNP	G	G	T	rs1055218		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PTH2	113091	broad.mit.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	rs200733272		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TSKS	60385	hgsc.bcm.edu	37	19	50249905	50249905	+	Missense_Mutation	SNP	T	T	C	rs57733064	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56000755	56000755	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZNF587B	100293516	ucsc.edu	37	19	58353078	58353078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZSCAN1	284312	hgsc.bcm.edu	37	19	58549354	58549354	+	Silent	SNP	C	C	T	rs113374422	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PXDN	7837	hgsc.bcm.edu	37	2	1748117	1748117	+	Silent	SNP	C	C	G	rs140134102	by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15607887	15607887	+	Missense_Mutation	SNP	T	T	C	rs186337430		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	0	2	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
LOC442028	0	ucsc.edu	37	2	95539093	95539093	+	RNA	SNP	C	C	A	rs112056322		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	9	0	9	0	0
LONRF2	164832	hgsc.bcm.edu	37	2	100938481	100938481	+	Missense_Mutation	SNP	C	C	G	rs74177696		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
C1QL2	165257	hgsc.bcm.edu	37	2	119915509	119915509	+	Silent	SNP	G	G	T	rs1317848	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014678	133014678	+	RNA	SNP	A	A	G	rs72869462	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014703	133014703	+	RNA	SNP	T	T	C	rs72869464	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014721	133014721	+	RNA	SNP	T	T	C	rs72869465	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
LYPD1	116372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133425989	133425989	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145187558	145187558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
IKZF2	22807	broad.mit.edu;bcgsc.ca	37	2	213872463	213872463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
WNT6	7475	hgsc.bcm.edu	37	2	219736369	219736369	+	Missense_Mutation	SNP	C	C	G	rs141494427		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PRR21	643905	hgsc.bcm.edu	37	2	240982362	240982362	+	Missense_Mutation	SNP	G	G	A	rs151246209	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PASK	23178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242077469	242077469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
GFRA4	64096	hgsc.bcm.edu	37	20	3641868	3641868	+	Missense_Mutation	SNP	A	A	T	rs146579049		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FRG1B	284802	broad.mit.edu;bcgsc.ca	37	20	29625895	29625895	+	RNA	SNP	G	G	A	rs76435412	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	19	19	0	0	0
DUSP15	128853	hgsc.bcm.edu	37	20	30449325	30449325	+	Missense_Mutation	SNP	C	C	G	rs947310	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46929360	46929360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	87	37	50	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
POM121L1P	25812	broad.mit.edu	37	22	22985653	22985653	+	RNA	SNP	A	A	G	rs5759226		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	4	0	4	0	0
NEFH	4744	ucsc.edu	37	22	29885564	29885564	+	Silent	SNP	A	A	G	rs202065964		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	10	10	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	4	4	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TOM1	10043	broad.mit.edu	37	22	35734776	35734776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266117	41266139	+	Frame_Shift_Del	DEL	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
IP6K2	51447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48726082	48726082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	48	45	3	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ATR	545	bcgsc.ca	37	3	142278201	142278201	+	Missense_Mutation	SNP	T	T	C	rs200491706		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
DHX36	170506	hgsc.bcm.edu	37	3	153994065	153994065	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	28	28	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	24	11	13	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	2	0	2	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ODAM	54959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71068537	71068537	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ALB	213	bcgsc.ca	37	4	74272352	74272352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126371727	126371727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
HPGD	3248	bcgsc.ca	37	4	175443156	175443156	+	Silent	SNP	C	C	T	rs1050145	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	18	18	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
IQGAP2	10788	bcgsc.ca	37	5	75948601	75948601	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	9	9	0	0	0
GPR150	285601	hgsc.bcm.edu	37	5	94956923	94956923	+	Missense_Mutation	SNP	G	G	A	rs201990735		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	15	12	3	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	3	0	3	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	6	0	6	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
HIST1H4B	8366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26027331	26027331	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
SCUBE3	222663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35207577	35207577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SMIM8	57150	hgsc.bcm.edu	37	6	88046858	88046858	+	Missense_Mutation	SNP	G	G	T	rs141864670	alternate_allele	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	7	7	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	14	0	14	0	0
SP8	221833	broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	7	0	7	0	0
CYP3A7	1551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99305480	99305480	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	1	0	0	0
CYP3A7	1551	broad.mit.edu;bcgsc.ca	37	7	99305519	99305519	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	78	78	0	0	0
ZNF775	285971	hgsc.bcm.edu	37	7	150094851	150094851	+	Missense_Mutation	SNP	A	A	G	rs13225910		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
ESYT2	57488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158534581	158534581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750467	8750467	+	Silent	SNP	A	A	G	rs1062988		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940267	144940267	+	Silent	SNP	G	G	A	rs28441354		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	26	0	26	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
GOLM1	51280	bcgsc.ca	37	9	88694179	88694179	+	Silent	SNP	G	G	T	rs3750389	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	20	20	0	0	0
DEC1	50514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118162667	118162667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069495	141069495	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	2635	2635	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	22686	17464	5204	6	12
ND2	0	bcgsc.ca	37	MT	5374	5374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	21384	16509	4849	11	15
COX1	5742	broad.mit.edu	37	MT	6070	6070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	11081	10122	945	5	9
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9868	9868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	90898	75040	15565	210	83
GTPBP6	8225	bcgsc.ca	37	X	229493	229493	+	Missense_Mutation	SNP	G	G	A	rs34297062		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	23	23	0	0	0
CXorf28	100129464	bcgsc.ca	37	X	3190396	3190396	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	1	0	1	0	0
BCOR	54880	broad.mit.edu;bcgsc.ca	37	X	39931877	39931877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	5	5	0	0	0
DCAF12L1	139170	hgsc.bcm.edu	37	X	125686536	125686536	+	Missense_Mutation	SNP	T	T	C	rs11095722	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PRR21	643905	hgsc.bcm.edu	37	2	240982368	240982369	+	Frame_Shift_Ins	INS	-	-	GATGAAGAGCCGTG	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
PCDHB5	26167	hgsc.bcm.edu	37	5	140516736	140516737	+	In_Frame_Ins	INS	-	-	TGG	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
RSBN1L	222194	hgsc.bcm.edu;broad.mit.edu	37	7	77326230	77326231	+	In_Frame_Ins	INS	-	-	GCCGCT	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	0	0	0	0	0
