Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AK2	204	bcgsc.ca	37	1	33478983	33478983	+	Silent	SNP	G	G	A	rs79403800		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	172	172	0	0	0
BMP8A	353500	hgsc.bcm.edu	37	1	39957913	39957913	+	Missense_Mutation	SNP	A	A	G	rs4660269	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
NT5C1A	84618	broad.mit.edu	37	1	40126766	40126766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	0	2	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	0	2	0	0
ZBTB37	84614	broad.mit.edu;bcgsc.ca	37	1	173855208	173855208	+	Silent	SNP	A	A	G	rs16846520	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
LEMD1	93273	broad.mit.edu	37	1	205350973	205350973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
IL24	11009	broad.mit.edu	37	1	207073701	207073701	+	Missense_Mutation	SNP	C	C	T	rs142816743	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CR1	1378	bcgsc.ca	37	1	207760773	207760773	+	Missense_Mutation	SNP	C	C	T	rs3737002	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PTPN14	5784	broad.mit.edu	37	1	214558119	214558119	+	Missense_Mutation	SNP	T	T	G	rs112523432	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240256171	240256171	+	Silent	SNP	G	G	A	rs142232913		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SKIDA1	387640	broad.mit.edu	37	10	21805484	21805484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	3	2	0	1	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
FAM21C	253725	bcgsc.ca	37	10	46254776	46254776	+	Missense_Mutation	SNP	A	A	C	rs2596979	bycluster;byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	13	1	12	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	125516731	125516731	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
MYBPC3	4607	bcgsc.ca	37	11	47354787	47354787	+	Silent	SNP	C	C	T	rs1052373	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	25	25	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	GGTGGT	GGTGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
OR5M10	390167	hgsc.bcm.edu;ucsc.edu	37	11	56344846	56344846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
OR5M10	390167	hgsc.bcm.edu	37	11	56344847	56344847	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SLC43A3	29015	broad.mit.edu;bcgsc.ca	37	11	57175299	57175299	+	Missense_Mutation	SNP	C	C	T	rs141037487	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	17	17	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	663	0	661	0	2
B3GNT6	192134	hgsc.bcm.edu	37	11	76751587	76751587	+	Silent	SNP	G	G	A	rs34153015		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TAS2R19	259294	bcgsc.ca	37	12	11174466	11174466	+	Silent	SNP	G	G	A	rs199592952		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
ALG10	84920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	34175538	34175538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
GLT8D2	83468	broad.mit.edu	37	12	104383225	104383225	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	10	10	0	0	0
ELF1	1997	broad.mit.edu	37	13	41515284	41515284	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
DACH1	1602	hgsc.bcm.edu	37	13	72440668	72440668	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
DACH1	1602	hgsc.bcm.edu	37	13	72440673	72440673	+	Missense_Mutation	SNP	C	C	T	rs200162861		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	4	4	0	0	0
COL4A1	1282	bcgsc.ca	37	13	110850842	110850842	+	Silent	SNP	A	A	G	rs995224	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	3	3	0	0	0
C15orf55	256646	bcgsc.ca	37	15	34649211	34649211	+	Missense_Mutation	SNP	C	C	A	rs2279683	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
C15orf55	256646	bcgsc.ca	37	15	34649247	34649247	+	Missense_Mutation	SNP	C	C	G	rs2279684	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PLCB2	5330	hgsc.bcm.edu	37	15	40583560	40583560	+	Silent	SNP	G	G	T	rs62021888		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
DMXL2	23312	ucsc.edu	37	15	51855576	51855576	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
RASGRF1	5923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79339163	79339163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	20	0	20	0	0
DNM1P46	196968	ucsc.edu;bcgsc.ca	37	15	100332877	100332877	+	RNA	SNP	T	T	C	rs6598274		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CCDC64B	146439	bcgsc.ca	37	16	3079685	3079685	+	Missense_Mutation	SNP	T	T	C	rs2244494	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67400961	67400961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SMCR7	125170	bcgsc.ca	37	17	18167505	18167505	+	Silent	SNP	T	T	C	rs2605143	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	41	41	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904125	21904125	+	RNA	SNP	G	G	A	rs75373210	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890565	5890565	+	Missense_Mutation	SNP	G	G	C	rs200146022		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
GNAL	2774	hgsc.bcm.edu	37	18	11689699	11689699	+	Missense_Mutation	SNP	G	G	A	rs7236433	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZNF407	55628	broad.mit.edu	37	18	72346693	72346693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	2	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
LINGO3	645191	bcgsc.ca	37	19	2290132	2290132	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837417	17837417	+	Silent	SNP	G	G	A	rs138676223		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	6	0	6	0	0
DMWD	1762	broad.mit.edu	37	19	46289396	46289396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	8	3	5	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50104897	50104897	+	Missense_Mutation	SNP	C	C	T	rs189937355		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	4	0	4	0	0
SHANK1	50944	hgsc.bcm.edu	37	19	51171188	51171188	+	Silent	SNP	G	G	A	rs750578		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
KLK14	43847	bcgsc.ca	37	19	51584951	51584951	+	Missense_Mutation	SNP	T	T	C	rs35287116	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
MZF1	7593	hgsc.bcm.edu	37	19	59074028	59074081	+	In_Frame_Del	DEL	CGCTCGCCACTGTGCACGCGCCGGTGCTGCAGCAGCACTGAGCGGCGGCCGAAG	CGCTCGCCACTGTGCACGCGCCGGTGCTGCAGCAGCACTGAGCGGCGGCCGAAG	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	CGCTCGCCACTGTGCACGCGCCGGTGCTGCAGCAGCACTGAGCGGCGGCCGAAG	CGCTCGCCACTGTGCACGCGCCGGTGCTGCAGCAGCACTGAGCGGCGGCCGAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SEMA4F	10505	hgsc.bcm.edu	37	2	74881514	74881514	+	Missense_Mutation	SNP	C	C	G	rs187477207		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
CNOT11	55571	broad.mit.edu	37	2	101869801	101869808	+	Frame_Shift_Del	DEL	CACGGCGC	CACGGCGC	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CNOT11	55571	hgsc.bcm.edu	37	2	101869801	101869810	+	Frame_Shift_Del	DEL	CACGGCGCTC	CACGGCGCTC	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	CACGGCGCTC	CACGGCGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CNOT11	55571	broad.mit.edu	37	2	101869810	101869810	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
UGGT1	56886	bcgsc.ca	37	2	128934400	128934400	+	Silent	SNP	T	T	C	rs2290111	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
OBSL1	23363	hgsc.bcm.edu	37	2	220435375	220435375	+	Silent	SNP	G	G	A	rs1061399	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	13	0	13	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35838497	35838497	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	140	97	43	0	0
PREX1	57580	bcgsc.ca	37	20	47269233	47269233	+	Missense_Mutation	SNP	C	C	G	rs41283558	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
GUSBP11	91316	bcgsc.ca	37	22	23982971	23982971	+	RNA	SNP	T	T	C	rs72495492		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
GUSBP11	91316	bcgsc.ca	37	22	23982978	23982978	+	RNA	SNP	G	G	C	rs76198551		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
GUSBP11	91316	bcgsc.ca	37	22	23982996	23982996	+	RNA	SNP	T	T	C	rs202094915		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
GPR62	118442	hgsc.bcm.edu	37	3	51990315	51990315	+	Missense_Mutation	SNP	A	A	G	rs28651222		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101520307	101520307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	0	2	0	0
FAM86JP	100125556	broad.mit.edu	37	3	125647486	125647486	+	RNA	SNP	A	A	T	rs1976459	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	4	4	0	0	0
FAM86JP	100125556	broad.mit.edu	37	3	125647512	125647512	+	RNA	SNP	T	T	G	rs1976458	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
EFCC1	79825	hgsc.bcm.edu	37	3	128720487	128720487	+	Missense_Mutation	SNP	A	A	G	rs1871951	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	9	0	9	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PDGFRA	5156	broad.mit.edu	37	4	55124953	55124953	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	0	2	0	0
SH3D19	152503	broad.mit.edu	37	4	152096227	152096227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	5	5	0	0	0
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	146	146	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	3	2	1	0	0
ERAP2	64167	hgsc.bcm.edu	37	5	96232568	96232568	+	Splice_Site	SNP	G	G	A	rs75364820		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZNF879	345462	broad.mit.edu	37	5	178459426	178459426	+	Missense_Mutation	SNP	A	A	C	rs17078991	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313078	1313078	+	Missense_Mutation	SNP	G	G	A	rs78460560		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZKSCAN4	387032	broad.mit.edu	37	6	28213111	28213111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
CDSN	1041	bcgsc.ca	37	6	31084639	31084639	+	Silent	SNP	C	C	T	rs4713436	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	11	0	11	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	42	21	21	0	0
PMS2CL	441194	broad.mit.edu	37	7	6777369	6777369	+	RNA	SNP	T	T	C	rs35291651	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	5	5	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	23	0	23	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102995342	102995342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	61	33	28	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TRIM24	8805	broad.mit.edu	37	7	138252356	138252356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	32	31	1	0	0
SVOPL	136306	broad.mit.edu	37	7	138363767	138363767	+	Silent	SNP	A	A	G	rs10250576	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SSPO	23145	bcgsc.ca	37	7	149522162	149522162	+	Missense_Mutation	SNP	G	G	T	rs62617122	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SNTB1	6641	hgsc.bcm.edu	37	8	121824063	121824063	+	Silent	SNP	C	C	A	rs190526297	by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144810138	144810138	+	Missense_Mutation	SNP	G	G	A	rs1137806		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	2	0	2	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	4	0	4	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
TMEM215	401498	broad.mit.edu	37	9	32784293	32784293	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
COL27A1	85301	bcgsc.ca	37	9	116940594	116940594	+	Silent	SNP	A	A	G	rs3810930	byfrequency	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	1	1	0	0	0
PHKA2	5256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18938279	18938279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	5	5	0	0	0
LOC100873065	0	broad.mit.edu	37	X	23020626	23020629	+	RNA	DEL	GAGT	GAGT	-	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37027466	37027466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
LURAP1L	286343	bcgsc.ca	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5LH-01A-11D-A29I-10	TCGA-OR-A5LH-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	249e8468-e4e0-47ae-ad6e-ed43feac2004	8e5e2764-3193-4937-a8cf-d72cbf9b6353	0	0	0	0	0
