Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GPR153	387509	broad.mit.edu	37	1	6310588	6310588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
UBE4B	10277	broad.mit.edu	37	1	10166330	10166330	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ATP13A2	23400	bcgsc.ca	37	1	17319011	17319011	+	Silent	SNP	G	G	A	rs2076603	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	1	0	0	0
EPHA8	2046	bcgsc.ca	37	1	22902772	22902772	+	Silent	SNP	C	C	T	rs56218493	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	0	4	0	0
LCE1E	353135	bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
BPNT1	10380	ucsc.edu	37	1	220231338	220231338	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	2	0	0	0
ERO1LB	56605	bcgsc.ca	37	1	236385276	236385276	+	Missense_Mutation	SNP	C	C	T	rs116000191	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	6	6	0	0	0
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247694861	247694861	+	Missense_Mutation	SNP	G	G	A	rs147306837	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu	37	10	17087956	17087956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	5	0	5	0	0
SMC3	9126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112357947	112357947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	12	9	3	0	0
RASSF7	8045	bcgsc.ca	37	11	562421	562421	+	Missense_Mutation	SNP	G	G	A	rs2242182	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	4	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SYT13	57586	broad.mit.edu	37	11	45274076	45274076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
DTX4	23220	broad.mit.edu	37	11	58949674	58949674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64374949	64374949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	1	2	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64577330	64577333	+	Frame_Shift_Del	DEL	AGAC	AGAC	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGAC	AGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	39	0	39	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KRTAP5-8	57830	ucsc.edu	37	11	71249125	71249125	+	Silent	SNP	A	A	G	rs113379698		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KRTAP5-8	57830	ucsc.edu	37	11	71249152	71249152	+	Silent	SNP	C	C	T	rs112809261	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108142086	108142098	+	Frame_Shift_Del	DEL	CACAAGGGATGCT	CACAAGGGATGCT	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	CACAAGGGATGCT	CACAAGGGATGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113631587	113631587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	0	2	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	920	779	139	0	1
C1QL4	338761	broad.mit.edu	37	12	49729895	49729895	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
HOXC9	3225	hgsc.bcm.edu	37	12	54394337	54394337	+	Missense_Mutation	SNP	C	C	T	rs11829948	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85449577	85449577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TMEM119	338773	broad.mit.edu;mdanderson.org	37	12	108985995	108985995	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
CLN5	1203	hgsc.bcm.edu	37	13	77566320	77566320	+	Silent	SNP	C	C	G	rs138037471	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	0	3	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
HHIPL1	84439	bcgsc.ca;mdanderson.org	37	14	100141747	100141747	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
DYX1C1	161582	broad.mit.edu	37	15	55759242	55759242	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
LRRK1	79705	broad.mit.edu	37	15	101606029	101606029	+	Missense_Mutation	SNP	C	C	A	rs34876840	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SIAH1	6477	broad.mit.edu	37	16	48396114	48396114	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	21	21	0	0	0
HEATR3	55027	bcgsc.ca	37	16	50112894	50112894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	3	0	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	18	7	11	0	0
THAP11	57215	hgsc.bcm.edu;ucsc.edu	37	16	67876805	67876805	+	Silent	SNP	A	A	G	rs28434205	bycluster;byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	41	5	36	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876814	67876814	+	Silent	SNP	G	G	A	rs143185886	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	13	13	0	0	0
IST1	9798	ucsc.edu	37	16	71956517	71956517	+	Silent	SNP	C	C	A	rs78045037	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
IST1	9798	ucsc.edu	37	16	71956529	71956529	+	Silent	SNP	C	C	T	rs28701631	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	19	0	19	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TTC25	83538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40093013	40093013	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	0	2	0	0
SMG8	55181	ucsc.edu	37	17	57289754	57289754	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	3	0	0	0
BPTF	2186	ucsc.edu;bcgsc.ca	37	17	65822317	65822317	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
CDC42EP4	23580	ucsc.edu;bcgsc.ca	37	17	71282046	71282046	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	6	5	1	0	0
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73282384	73282384	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
CEP192	55125	broad.mit.edu	37	18	13048939	13048939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	917526	917526	+	Silent	SNP	A	A	G	rs10407968	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	17	17	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TECR	9524	broad.mit.edu	37	19	14674673	14674673	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	636	634	2	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	6	3	3	0	0
KCNN1	3780	hgsc.bcm.edu	37	19	18084724	18084724	+	Silent	SNP	C	C	T	rs77030907	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KCNN1	3780	hgsc.bcm.edu	37	19	18084775	18084775	+	Silent	SNP	G	G	A	rs75754669	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50474960	50474960	+	RNA	SNP	C	C	G	rs201054007	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56296996	56296996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	5	2	3	0	0
ZNF324	25799	broad.mit.edu	37	19	58983240	58983240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	1	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
EGR4	1961	hgsc.bcm.edu	37	2	73518964	73518964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116497402	116497402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118582643	118582643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	6	3	3	0	0
SCN7A	6332	broad.mit.edu	37	2	167289175	167289175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
MAP2	4133	bcgsc.ca	37	2	210558162	210558162	+	Missense_Mutation	SNP	G	G	A	rs741006	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
IRS1	3667	broad.mit.edu	37	2	227659840	227659840	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
C20orf166-AS1	253868	broad.mit.edu;bcgsc.ca	37	20	61143819	61143819	+	RNA	SNP	G	G	A	rs111651569	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	189	165	24	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	150	149	1	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	155	155	0	0	0
KCNJ15	3772	bcgsc.ca	37	21	39671447	39671447	+	Missense_Mutation	SNP	C	C	T	rs3746876	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47836750	47836750	+	Silent	SNP	T	T	C	rs61738290	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PRSS50	29122	hgsc.bcm.edu	37	3	46759293	46759293	+	Missense_Mutation	SNP	C	C	T	rs143548046	by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
WDR6	11180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49050657	49050657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	116	26	90	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78680354	78680354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	2	0	0	0
DCBLD2	131566	broad.mit.edu	37	3	98600400	98600400	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ZBTB20	26137	broad.mit.edu	37	3	114057884	114057884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SDHAP2	727956	broad.mit.edu	37	3	195398271	195398271	+	RNA	SNP	A	A	G	rs4927673		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
LRRC33	375387	ucsc.edu;bcgsc.ca	37	3	196387312	196387312	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
UVSSA	57654	broad.mit.edu;bcgsc.ca	37	4	1373985	1373985	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	16	16	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	16	5	11	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	54	54	0	0	0
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	6	0	6	0	0
COL23A1	91522	broad.mit.edu	37	5	177690210	177690210	+	Missense_Mutation	SNP	G	G	T	rs112924647	alternate_allele	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33419613	33419615	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
C6orf222	389384	broad.mit.edu	37	6	36297915	36297915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	0	4	0	0
FIG4	9896	ucsc.edu;bcgsc.ca	37	6	110064928	110064928	+	Missense_Mutation	SNP	A	A	T	rs2295837	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	3	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	0	1	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
JPH1	56704	broad.mit.edu	37	8	75233186	75233186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
TMEM67	91147	broad.mit.edu	37	8	94809628	94809628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	1	1	0	0	0
RNF139	11236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	125498340	125498340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	4	0	0	0
TSNARE1	203062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	143396409	143396409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	11	0	11	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	0	4	0	0
CDKN2B	1030	bcgsc.ca;mdanderson.org	37	9	22009141	22009141	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	3	3	0	0	0
FAM27A	548321	bcgsc.ca	37	9	45727609	45727609	+	RNA	SNP	C	C	A	rs76582112		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68430022	68430022	+	RNA	SNP	C	C	A	rs76027797		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	2	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936830	124936830	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	7	7	0	0	0
NAIF1	203245	broad.mit.edu	37	9	130828964	130828964	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	4	4	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SAPCD2	89958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139959388	139959388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	7	5	2	0	0
RNR1	6052	bcgsc.ca	37	MT	664	664	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	105	101	4	0	0
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24844592	24844592	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	2	0	2	0	0
BCYRN1	618	bcgsc.ca	37	X	70678034	70678034	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
ATRX	546	broad.mit.edu	37	X	76856021	76856021	+	Missense_Mutation	SNP	T	T	C	rs45439799	byfrequency	TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
DIAPH2	1730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	96603202	96603202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	5	0	5	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
PGAP2	27315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3846588	3846589	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46328052	46328053	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5LT-01A-11D-A29I-10	TCGA-OR-A5LT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9eaee6db-6b65-45ec-9394-7338c2e3b8db	b493ceba-ee9d-477a-b108-83c06d00d87e	0	0	0	0	0
